UBERON:0002185: Difference between revisions
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|has_quality= | |has_quality= | ||
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|part_of= | |part_of=UBERON:0002224;;UBERON:0007196 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 13:31, 27 June 2012
| Name: | bronchus | ||
|---|---|---|---|
| Definition: | "A portion of the airway that connects to the lungs[GO]." [Wikipedia:Bronchus] | ||
| Xrefs: |
| ||
| Synonyms: |
"bronchi" EXACT PLURAL [] "bronchial tissue" RELATED [BTO:0001340] "bronchial trunk" EXACT [] | ||
| Alt_id: | UBERON:FMA_7409-MA_0000436-MIAA_0000133-XAO_0000121 | ||
| Subset: |
organ_slim uberon_slim |
200px-Respiratory_system_complete_numbered.svg.png]
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0004119(endoderm-derived structure),UBERON:0005178(thoracic cavity element) |
|---|---|
| part_of: | UBERON:0002224(thoracic cavity),UBERON:0007196(tracheobronchial tree) |
Children
| part of: | UBERON:0002031 (epithelium of bronchus),CL:0002328 (bronchial epithelial cell),CL:0002598 (bronchial smooth muscle cell) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 11453-119A4 (Bronchial Epithelial Cell, donor4)
- 11457-119A8 (Bronchial Epithelial Cell, donor5)
- 11461-119B3 (Bronchial Epithelial Cell, donor6)
- 11511-119G8 (Bronchial Epithelial Cell, donor1)
- 11512-119G9 (Smooth Muscle Cells - Bronchial, donor1)
- 11591-120G7 (Bronchial Epithelial Cell, donor2)
- 11592-120G8 (Smooth Muscle Cells - Bronchial, donor2)
- 11672-122G7 (Bronchial Epithelial Cell, donor3)
- 11769-123I5 (Bronchial Epithelial Cell, donor7)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002185 (bronchus), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 3.85e-51 | FFCP PHASE1:Hg19::chr3:189632708..189632721,-#_010fed21d963f35116552b203c50ecc2 | p@chr3:189632708..189632721, - |
| 3.85e-51 | FFCP PHASE2:Hg19::chr3:189632708..189632721,-#_010fed21d963f35116552b203c50ecc2 | p@chr3:189632708..189632721, - |
| 2.22e-40 | FFCP PHASE1:Hg19::chr1:209823455..209823467,-#_eb2b6453e0da5273c4405d6bd1db29d8 | p@chr1:209823455..209823467, - |
| 2.22e-40 | FFCP PHASE2:Hg19::chr1:209823455..209823467,-#_eb2b6453e0da5273c4405d6bd1db29d8 | p@chr1:209823455..209823467, - |
| 1.73e-30 | FFCP PHASE1:Hg19::chr1:95088552..95088567,+#_28d0572eb62da5d5e7bc1565f2ca559e | p@chr1:95088552..95088567, + |
| 1.73e-30 | FFCP PHASE2:Hg19::chr1:95088552..95088567,+#_28d0572eb62da5d5e7bc1565f2ca559e | p@chr1:95088552..95088567, + |
| 2.3e-28 | FFCP PHASE2:Hg19::chr1:3591362..3591369,-#_3a53adec326121572a36d8d61d0c8170 | p@chr1:3591362..3591369, - |
| 2.3e-28 | FFCP PHASE1:Hg19::chr1:3591362..3591369,-#_3a53adec326121572a36d8d61d0c8170 | p@chr1:3591362..3591369, - |
| 1.59e-27 | FFCP PHASE2:Hg19::chr2:113830230..113830233,-#_5f35f1a7f13d5f75a7b12444d2644e00 | p@chr2:113830230..113830233, - |
| 1.59e-27 | FFCP PHASE1:Hg19::chr2:113830230..113830233,-#_5f35f1a7f13d5f75a7b12444d2644e00 | p@chr2:113830230..113830233, - |
| 2.16e-26 | FFCP PHASE2:Hg19::chr10:73679250..73679255,-#_8f9dbbdd575fe7793ca4444ee667dd0e | p@chr10:73679250..73679255, - |
| 2.16e-26 | FFCP PHASE1:Hg19::chr10:73679250..73679255,-#_8f9dbbdd575fe7793ca4444ee667dd0e | p@chr10:73679250..73679255, - |
| 8.01e-25 | FFCP PHASE1:Hg19::chr1:9953308..9953320,-#_2980e6d79f4d84ab0ff388fca109e6a7 | p9@CTNNBIP1 |
| 8.01e-25 | FFCP PHASE2:Hg19::chr1:9953308..9953320,-#_2980e6d79f4d84ab0ff388fca109e6a7 | p9@CTNNBIP1 |
| 1.28e-23 | FFCP PHASE1:Hg19::chr17:48611912..48611919,+#_0e8ef6671c7fdb81f9a3c22bad558ceb | p7@EPN3 |
| 1.28e-23 | FFCP PHASE2:Hg19::chr17:48611912..48611919,+#_0e8ef6671c7fdb81f9a3c22bad558ceb | p7@EPN3 |
| 1.44e-23 | FFCP PHASE1:Hg19::chr7:135018332..135018336,+#_3d3cabf95a87cfd89127531ea2e9544d | p@chr7:135018332..135018336, + |
| 1.44e-23 | FFCP PHASE2:Hg19::chr7:135018332..135018336,+#_3d3cabf95a87cfd89127531ea2e9544d | p@chr7:135018332..135018336, + |
| 2.05e-23 | FFCP PHASE2:Hg19::chr1:95089255..95089279,-#_63dc579d69d82d8dae603bd58d77c539 | p1@ENST00000435559 |
| 2.05e-23 | FFCP PHASE1:Hg19::chr1:95089255..95089279,-#_63dc579d69d82d8dae603bd58d77c539 | p1@ENST00000435559 |
| 2.99e-23 | FFCP PHASE1:Hg19::chr17:48611940..48611947,+#_7c9910accc87773cf46cd8f97c93e20f | p5@EPN3 |
| 2.99e-23 | FFCP PHASE2:Hg19::chr17:48611940..48611947,+#_7c9910accc87773cf46cd8f97c93e20f | p5@EPN3 |
| 4.36e-23 | FFCP PHASE1:Hg19::chr2:74211227..74211238,+#_c2eb6186299a74fdaf0ea9d26f70b258 | p@chr2:74211227..74211238, + |
| 4.36e-23 | FFCP PHASE2:Hg19::chr2:74211227..74211238,+#_c2eb6186299a74fdaf0ea9d26f70b258 | p@chr2:74211227..74211238, + |
| 4.12e-22 | FFCP PHASE2:Hg19::chr17:38179639..38179652,-#_3d970896ce57aa126cc0980eef1e5817 | p7@MED24 |
| 4.12e-22 | FFCP PHASE1:Hg19::chr17:38179639..38179652,-#_3d970896ce57aa126cc0980eef1e5817 | p7@MED24 |
| 1.7e-21 | FFCP PHASE1:Hg19::chr20:14248741..14248745,-#_b5c25d53ccf740408acb383b9bb0582b | p@chr20:14248741..14248745, - |
| 1.7e-21 | FFCP PHASE2:Hg19::chr20:14248741..14248745,-#_b5c25d53ccf740408acb383b9bb0582b | p@chr20:14248741..14248745, - |
| 5.15e-21 | FFCP PHASE2:Hg19::chr1:27181551..27181558,-#_99fc3527a5098794d781574bd0051b74 | p@chr1:27181551..27181558, - |
| 5.15e-21 | FFCP PHASE1:Hg19::chr1:27181551..27181558,-#_99fc3527a5098794d781574bd0051b74 | p@chr1:27181551..27181558, - |
| 5.96e-21 | FFCP PHASE2:Hg19::chr17:38652393..38652403,-#_586831d63c59b96742f5040c09a012e9 | p16@TNS4 |
| 5.96e-21 | FFCP PHASE1:Hg19::chr17:38652393..38652403,-#_586831d63c59b96742f5040c09a012e9 | p16@TNS4 |
| 7.3e-21 | FFCP PHASE1:Hg19::chr1:153540420..153540455,+#_becab612231c98dbcf2a261a1e8f3b26 | p@chr1:153540420..153540455, + |
| 7.3e-21 | FFCP PHASE2:Hg19::chr1:153540420..153540455,+#_becab612231c98dbcf2a261a1e8f3b26 | p@chr1:153540420..153540455, + |
| 7.35e-21 | FFCP PHASE2:Hg19::chr11:94427497..94427507,-#_7b9c3521cad9f72173e6179419741b67 | p@chr11:94427497..94427507, - |
| 7.35e-21 | FFCP PHASE1:Hg19::chr11:94427497..94427507,-#_7b9c3521cad9f72173e6179419741b67 | p@chr11:94427497..94427507, - |
| 7.81e-21 | FFCP PHASE1:Hg19::chr12:52844247..52844256,-#_b251000296534795735beb3e73486692 | p@chr12:52844247..52844256, - |
| 7.81e-21 | FFCP PHASE2:Hg19::chr12:52844247..52844256,-#_b251000296534795735beb3e73486692 | p@chr12:52844247..52844256, - |
| 1.21e-20 | FFCP PHASE1:Hg19::chr3:190252374..190252383,-#_63511c474e3c6867fcfb140a91758e0d | p@chr3:190252374..190252383, - |
| 1.21e-20 | FFCP PHASE2:Hg19::chr3:190252374..190252383,-#_63511c474e3c6867fcfb140a91758e0d | p@chr3:190252374..190252383, - |
| 1.25e-20 | FFCP PHASE1:Hg19::chr1:183133608..183133625,-#_a2253880048f69332286fa21ca45076f | p@chr1:183133608..183133625, - |
| 1.25e-20 | FFCP PHASE2:Hg19::chr1:183133608..183133625,-#_a2253880048f69332286fa21ca45076f | p@chr1:183133608..183133625, - |
| 1.34e-20 | FFCP PHASE1:Hg19::chr8:29414184..29414190,+#_86667dc4d6f568384f3bc7ab3e5adcd1 | p@chr8:29414184..29414190, + |
| 1.34e-20 | FFCP PHASE2:Hg19::chr8:29414184..29414190,+#_86667dc4d6f568384f3bc7ab3e5adcd1 | p@chr8:29414184..29414190, + |
| 5.05e-20 | FFCP PHASE2:Hg19::chr14:67879076..67879080,+#_0bac83ac992bd52c4d719488a310f9f6 | p@chr14:67879076..67879080, + |
| 5.05e-20 | FFCP PHASE1:Hg19::chr14:67879076..67879080,+#_0bac83ac992bd52c4d719488a310f9f6 | p@chr14:67879076..67879080, + |
| 6.95e-20 | FFCP PHASE2:Hg19::chr1:209807970..209807983,-#_f5627b8ca9073f1b7c5ab33ca04da9bf | p@chr1:209807970..209807983, - |
| 6.95e-20 | FFCP PHASE1:Hg19::chr1:209807970..209807983,-#_f5627b8ca9073f1b7c5ab33ca04da9bf | p@chr1:209807970..209807983, - |
| 1.16e-19 | FFCP PHASE2:Hg19::chr6:83075367..83075383,-#_2f6aa9aade7107befb7b8a15dfa60890 | p@chr6:83075367..83075383, - |
| 1.16e-19 | FFCP PHASE1:Hg19::chr6:83075367..83075383,-#_2f6aa9aade7107befb7b8a15dfa60890 | p@chr6:83075367..83075383, - |
| 4.98e-19 | FFCP PHASE1:Hg19::chr4:15937715..15937733,-#_d3e1f506a33cf77bca804d6f1d4da6f1 | p@chr4:15937715..15937733, - |
| 4.98e-19 | FFCP PHASE2:Hg19::chr4:15937715..15937733,-#_d3e1f506a33cf77bca804d6f1d4da6f1 | p@chr4:15937715..15937733, - |
| 7.24e-19 | FFCP PHASE2:Hg19::chr13:61507880..61507904,-#_695b69d9d6c20920cdc7a43da3cea27d | p@chr13:61507880..61507904, - |
| 7.24e-19 | FFCP PHASE1:Hg19::chr13:61507880..61507904,-#_695b69d9d6c20920cdc7a43da3cea27d | p@chr13:61507880..61507904, - |
| 8.08e-19 | FFCP PHASE1:Hg19::chr9:26747081..26747110,+#_35aa5c92f32417e249a439bcb9dc77a6 | p@chr9:26747081..26747110, + |
| 8.08e-19 | FFCP PHASE2:Hg19::chr9:26747081..26747110,+#_35aa5c92f32417e249a439bcb9dc77a6 | p@chr9:26747081..26747110, + |
| 8.66e-19 | FFCP PHASE1:Hg19::chr1:152475755..152475761,+#_82f58f858a38979358d56e4284530e67 | p@chr1:152475755..152475761, + |
| 8.66e-19 | FFCP PHASE2:Hg19::chr1:152475755..152475761,+#_82f58f858a38979358d56e4284530e67 | p@chr1:152475755..152475761, + |
| 9.47e-19 | FFCP PHASE1:Hg19::chr4:82554167..82554171,+#_889e4254c8f51596690cefbaf4d6a79c | p@chr4:82554167..82554171, + |
| 9.47e-19 | FFCP PHASE2:Hg19::chr4:82554167..82554171,+#_889e4254c8f51596690cefbaf4d6a79c | p@chr4:82554167..82554171, + |
| 1.03e-18 | FFCP PHASE2:Hg19::chr11:120008883..120008884,-#_ed15f78ecf18b6303a68cbe2b06683a9 | p16@TRIM29 |
| 1.03e-18 | FFCP PHASE1:Hg19::chr11:120008883..120008884,-#_ed15f78ecf18b6303a68cbe2b06683a9 | p16@TRIM29 |
| 1.35e-18 | FFCP PHASE1:Hg19::chr15:76443020..76443024,-#_a224c53ce173a9812d96a88dc7405be1 | p@chr15:76443020..76443024, - |
| 1.35e-18 | FFCP PHASE2:Hg19::chr15:76443020..76443024,-#_a224c53ce173a9812d96a88dc7405be1 | p@chr15:76443020..76443024, - |
| 1.39e-18 | FFCP PHASE2:Hg19::chr17:39777017..39777027,+#_1b43eabfa4c4e204e4b31e52feab4f27 | p@chr17:39777017..39777027, + |
| 1.39e-18 | FFCP PHASE1:Hg19::chr17:39777017..39777027,+#_1b43eabfa4c4e204e4b31e52feab4f27 | p@chr17:39777017..39777027, + |
| 1.66e-18 | FFCP PHASE2:Hg19::chr1:209825932..209825936,-#_2c46fc2f3238bc5b0ca8202f723e8edb | p10@LAMB3 |
| 1.66e-18 | FFCP PHASE1:Hg19::chr1:209825932..209825936,-#_2c46fc2f3238bc5b0ca8202f723e8edb | p10@LAMB3 |
| 1.93e-18 | FFCP PHASE1:Hg19::chr1:156720278..156720286,+#_65b8d98cd57e38daa31edce0426bb862 | p15@PRCC |
| 1.93e-18 | FFCP PHASE2:Hg19::chr1:156720278..156720286,+#_65b8d98cd57e38daa31edce0426bb862 | p15@PRCC |
| 2.08e-18 | FFCP PHASE1:Hg19::chr17:39780624..39780631,-#_fdb325240978b7b4da3556c7c50570d1 | p8@KRT17 |
| 2.08e-18 | FFCP PHASE2:Hg19::chr17:39780624..39780631,-#_fdb325240978b7b4da3556c7c50570d1 | p8@KRT17 |
| 2.52e-18 | FFCP PHASE1:Hg19::chr14:94426721..94426726,+#_1470882ef486674a49c7d024685e666c | p@chr14:94426721..94426726, + |
| 2.52e-18 | FFCP PHASE2:Hg19::chr14:94426721..94426726,+#_1470882ef486674a49c7d024685e666c | p@chr14:94426721..94426726, + |
| 4.98e-18 | FFCP PHASE2:Hg19::chr12:52913881..52913889,+#_0e02f437e525e5cfe94d875aa56ed44d | p@chr12:52913881..52913889, + |
| 4.98e-18 | FFCP PHASE1:Hg19::chr12:52913881..52913889,+#_0e02f437e525e5cfe94d875aa56ed44d | p@chr12:52913881..52913889, + |
| 5.58e-18 | FFCP PHASE1:Hg19::chr17:73719483..73719489,-#_d84224703a2ec63dba55721014d9ef59 | p@chr17:73719483..73719489, - |
| 5.58e-18 | FFCP PHASE2:Hg19::chr17:73719483..73719489,-#_d84224703a2ec63dba55721014d9ef59 | p@chr17:73719483..73719489, - |
| 6.26e-18 | FFCP PHASE2:Hg19::chr1:209827520..209827532,-#_3389c006df711dc0520eff0d4c1e4b02 | p@chr1:209827520..209827532, - |
| 6.26e-18 | FFCP PHASE1:Hg19::chr1:209827520..209827532,-#_3389c006df711dc0520eff0d4c1e4b02 | p@chr1:209827520..209827532, - |
| 7.44e-18 | FFCP PHASE2:Hg19::chr12:56332022..56332030,+#_22ff722a9a088c36847deefc8bb05f40 | p17@DGKA |
| 7.44e-18 | FFCP PHASE1:Hg19::chr12:56332022..56332030,+#_22ff722a9a088c36847deefc8bb05f40 | p17@DGKA |
| 3.42e-17 | FFCP PHASE2:Hg19::chr17:38657781..38657786,-#_14004bf113d1e37d31995d7e97593cba | p15@TNS4 |
| 3.42e-17 | FFCP PHASE1:Hg19::chr17:38657781..38657786,-#_14004bf113d1e37d31995d7e97593cba | p15@TNS4 |
| 4.04e-17 | FFCP PHASE2:Hg19::chr1:55436540..55436544,-#_e064e8c2dc574bffd028badd81004535 | p@chr1:55436540..55436544, - |
| 4.04e-17 | FFCP PHASE1:Hg19::chr1:55436540..55436544,-#_e064e8c2dc574bffd028badd81004535 | p@chr1:55436540..55436544, - |
| 5.02e-17 | FFCP PHASE1:Hg19::chr1:153534013..153534025,+#_0952ff6c56d98865befd63029077719f | p@chr1:153534013..153534025, + |
| 5.02e-17 | FFCP PHASE2:Hg19::chr1:153534013..153534025,+#_0952ff6c56d98865befd63029077719f | p@chr1:153534013..153534025, + |
| 5.03e-17 | FFCP PHASE2:Hg19::chr19:48101913..48101916,-#_8dfceb8e41817f7f460ea727e0d10213 | p@chr19:48101913..48101916, - |
| 5.03e-17 | FFCP PHASE2:Hg19::chr1:44446555..44446566,+#_8dfceb8e41817f7f460ea727e0d10213 | p16@B4GALT2 |
| 5.03e-17 | FFCP PHASE1:Hg19::chr1:44446555..44446566,+#_8dfceb8e41817f7f460ea727e0d10213 | p16@B4GALT2 |
| 5.03e-17 | FFCP PHASE1:Hg19::chr2:70581573..70581577,-#_8dfceb8e41817f7f460ea727e0d10213 | p@chr2:70581573..70581577, - |
| 5.03e-17 | FFCP PHASE1:Hg19::chr19:48101913..48101916,-#_8dfceb8e41817f7f460ea727e0d10213 | p@chr19:48101913..48101916, - |
| 5.03e-17 | FFCP PHASE2:Hg19::chr2:70581573..70581577,-#_8dfceb8e41817f7f460ea727e0d10213 | p@chr2:70581573..70581577, - |
| 5.45e-17 | FFCP PHASE2:Hg19::chr2:20402306..20402318,-#_195ac632dcd9764b649bf551f12df54e | p@chr2:20402306..20402318, - |
| 5.45e-17 | FFCP PHASE2:Hg19::chr1:46647115..46647118,-#_195ac632dcd9764b649bf551f12df54e | p@chr1:46647115..46647118, - |
| 5.45e-17 | FFCP PHASE1:Hg19::chr1:46647115..46647118,-#_195ac632dcd9764b649bf551f12df54e | p@chr1:46647115..46647118, - |
| 5.45e-17 | FFCP PHASE1:Hg19::chr2:20402306..20402318,-#_195ac632dcd9764b649bf551f12df54e | p@chr2:20402306..20402318, - |
| 5.92e-17 | FFCP PHASE2:Hg19::chr17:39768786..39768828,-#_9fdc3e5b1fd8047750c578944a6b3bfc | p2@KRT16 |
| 5.92e-17 | FFCP PHASE1:Hg19::chr17:39768786..39768828,-#_9fdc3e5b1fd8047750c578944a6b3bfc | p2@KRT16 |
