UBERON:0001769: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 15: | Line 15: | ||
|subset=uberon_slim;;vertebrate_core | |subset=uberon_slim;;vertebrate_core | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from=UBERON:0004128 | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of=UBERON:0001801 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 13:29, 27 June 2012
| Name: | iris | ||
|---|---|---|---|
| Definition: | "a membrane in the eye, responsible for controlling the amount of light reaching the retina. The iris consists of pigmented fibrovascular tissue known as a stroma. It is the most forward portion of the eye and the only one seen on superficial inspection. The stroma connects a sphincter muscle (sphincter pupillae), which contracts the pupil, and a set of dilator muscles (dilator pupillae) which open it. The back surface is covered by a heavily pigmented epithelial layer two cells thick (the iris pigment epithelium), but the front surface has no epithelium. The high pigment content blocks light from passing through the iris and restricts it to the pupil. The outer edge of the iris, known as the root, is attached to the sclera and the anterior ciliary body. The iris and ciliary body together are known as the anterior uvea. Just in front of the root of the iris is the region through which the aqueous humour constantly drains out of the eye, with the result that diseases of the iris often have important effects on intraocular pressure, and indirectly on vision. Depending on the amount of light, the iris makes the pupil larger or smaller." [Wikipedia:Iris_(anatomy)] | ||
| Xrefs: |
| ||
| Synonyms: | "anterior uvea" RELATED [] | ||
| Comments: | AO notes: MA and FMA differ regarding isa vs partof to vascular layer. Taxon notes: The avian iris and ciliary body undergoes a transition from smooth-to-striated muscle during embryonic development - dx.doi.org/10.1006/dbio.1998.9019 | ||
| Alt_id: | UBERON:FMA_58235-MA_0000273-XAO_0000185-ZFA_0001238 | ||
| Subset: |
uberon_slim vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0001768(uvea) |
|---|---|
| develops_from: | UBERON:0004128(optic vesicle) |
| part_of: | UBERON:0001801(anterior segment of eyeball) |
Children
| part of: | UBERON:0002506 (iris epithelium) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 11530-119I9 (Iris Pigment Epithelial Cells, donor1)
- 11610-120I8
- 11691-122I8
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001769 (iris), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 9.37e-99 | FFCP PHASE2:Hg19::chr15:71583868..71583874,-#_e107c7813e3201f1da98f2e4180dff6c | p@chr15:71583868..71583874, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr15:71583868..71583874,-#_e107c7813e3201f1da98f2e4180dff6c | p@chr15:71583868..71583874, - |
| 1.23e-66 | FFCP PHASE1:Hg19::chr5:78112479..78112482,+#_7e81bdc2dac51427f5220c5777374274 | p@chr5:78112479..78112482, + |
| 1.23e-66 | FFCP PHASE2:Hg19::chr5:78112479..78112482,+#_7e81bdc2dac51427f5220c5777374274 | p@chr5:78112479..78112482, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr15:74495062..74495063,-#_adca04fdf1c42c926cb3859be4742089 | p13@STRA6 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr15:74495062..74495063,-#_adca04fdf1c42c926cb3859be4742089 | p13@STRA6 |
| 4.66e-66 | FFCP PHASE1:Hg19::chr22:50667406..50667412,+#_41438aacf8bff5a6b9305cf98f7a33ab | p@chr22:50667406..50667412, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr22:50667406..50667412,+#_41438aacf8bff5a6b9305cf98f7a33ab | p@chr22:50667406..50667412, + |
| 1.46e-50 | FFCP PHASE2:Hg19::chr8:53853688..53853698,-#_aef5f1aa06572a23873cb392c67688a5 | p3@BC033145 |
| 1.46e-50 | FFCP PHASE1:Hg19::chr8:53853688..53853698,-#_aef5f1aa06572a23873cb392c67688a5 | p3@BC033145 |
| 2.42e-50 | FFCP PHASE2:Hg19::chr7:115723897..115723915,-#_f34c04affbdac6d659fd3e980bd1b954 | p@chr7:115723897..115723915, - |
| 2.42e-50 | FFCP PHASE1:Hg19::chr7:115723897..115723915,-#_f34c04affbdac6d659fd3e980bd1b954 | p@chr7:115723897..115723915, - |
| 6.58e-50 | FFCP PHASE2:Hg19::chr14:100847969..100847980,+#_ac18faca278893b8830802d30379ba9c | p6@WDR25 |
| 6.58e-50 | FFCP PHASE1:Hg19::chr14:100847969..100847980,+#_ac18faca278893b8830802d30379ba9c | p6@WDR25 |
| 6.62e-41 | FFCP PHASE1:Hg19::chr7:131803806..131803815,+#_aa0ab79bbc6ca3ededc7156b531078c1 | p@chr7:131803806..131803815, + |
| 6.62e-41 | FFCP PHASE1:Hg19::chr2:35680607..35680613,-#_aa0ab79bbc6ca3ededc7156b531078c1 | p@chr2:35680607..35680613, - |
| 6.62e-41 | FFCP PHASE2:Hg19::chr2:35680607..35680613,-#_aa0ab79bbc6ca3ededc7156b531078c1 | p@chr2:35680607..35680613, - |
| 6.62e-41 | FFCP PHASE2:Hg19::chr7:131803806..131803815,+#_aa0ab79bbc6ca3ededc7156b531078c1 | p@chr7:131803806..131803815, + |
| 9.91e-41 | FFCP PHASE1:Hg19::chr7:115723925..115723935,-#_9d382fbb15d14645a8cbbc9bfa92c267 | p@chr7:115723925..115723935, - |
| 9.91e-41 | FFCP PHASE1:Hg19::chrX:106198807..106198826,-#_9d382fbb15d14645a8cbbc9bfa92c267 | p@chrX:106198807..106198826, - |
| 9.91e-41 | FFCP PHASE2:Hg19::chr7:115723925..115723935,-#_9d382fbb15d14645a8cbbc9bfa92c267 | p@chr7:115723925..115723935, - |
| 9.91e-41 | FFCP PHASE2:Hg19::chrX:106198807..106198826,-#_9d382fbb15d14645a8cbbc9bfa92c267 | p@chrX:106198807..106198826, - |
| 1.48e-40 | FFCP PHASE2:Hg19::chr5:34728676..34728679,+#_b2d8d629159b7b77f71c9d9b822b9b5f | p26@RAI14 |
| 1.48e-40 | FFCP PHASE1:Hg19::chr5:34728676..34728679,+#_b2d8d629159b7b77f71c9d9b822b9b5f | p26@RAI14 |
| 2.21e-40 | FFCP PHASE2:Hg19::chr15:41062022..41062028,+#_4ac871acbbfd7962777640c0b07cd046 | p3@C15orf62 |
| 2.21e-40 | FFCP PHASE1:Hg19::chr15:41062022..41062028,+#_4ac871acbbfd7962777640c0b07cd046 | p3@C15orf62 |
| 3.3e-40 | FFCP PHASE1:Hg19::chr4:88447806..88447810,+#_0e48f544e8b7fcffed66b8ce856e45de | p@chr4:88447806..88447810, + |
| 3.3e-40 | FFCP PHASE2:Hg19::chr4:88447806..88447810,+#_0e48f544e8b7fcffed66b8ce856e45de | p@chr4:88447806..88447810, + |
| 3.3e-40 | FFCP PHASE1:Hg19::chr1:94583454..94583465,-#_0e48f544e8b7fcffed66b8ce856e45de | p@chr1:94583454..94583465, - |
| 3.3e-40 | FFCP PHASE2:Hg19::chr1:94583454..94583465,-#_0e48f544e8b7fcffed66b8ce856e45de | p@chr1:94583454..94583465, - |
| 3.3e-40 | FFCP PHASE1:Hg19::chr3:98671855..98671858,+#_0e48f544e8b7fcffed66b8ce856e45de | p@chr3:98671855..98671858, + |
| 3.3e-40 | FFCP PHASE1:Hg19::chr16:80552480..80552487,-#_0e48f544e8b7fcffed66b8ce856e45de | p@chr16:80552480..80552487, - |
| 3.3e-40 | FFCP PHASE2:Hg19::chr16:80552480..80552487,-#_0e48f544e8b7fcffed66b8ce856e45de | p@chr16:80552480..80552487, - |
| 3.3e-40 | FFCP PHASE2:Hg19::chr3:98671855..98671858,+#_0e48f544e8b7fcffed66b8ce856e45de | p@chr3:98671855..98671858, + |
| 2.58e-34 | FFCP PHASE2:Hg19::chr3:98672197..98672201,+#_d4c059cd3d4f9690bfb11ecf040ba348 | p@chr3:98672197..98672201, + |
| 2.58e-34 | FFCP PHASE1:Hg19::chr11:31667372..31667383,-#_d4c059cd3d4f9690bfb11ecf040ba348 | p@chr11:31667372..31667383, - |
| 2.58e-34 | FFCP PHASE2:Hg19::chr11:31667372..31667383,-#_d4c059cd3d4f9690bfb11ecf040ba348 | p@chr11:31667372..31667383, - |
| 2.58e-34 | FFCP PHASE1:Hg19::chr3:98672197..98672201,+#_d4c059cd3d4f9690bfb11ecf040ba348 | p@chr3:98672197..98672201, + |
| 3.61e-34 | FFCP PHASE1:Hg19::chr15:69339407..69339410,+#_c259fa6649f3e710c35758af27085c93 | p3@NOX5 |
| 3.61e-34 | FFCP PHASE2:Hg19::chr15:69339407..69339410,+#_c259fa6649f3e710c35758af27085c93 | p3@NOX5 |
| 7.06e-34 | FFCP PHASE2:Hg19::chr1:8938123..8938135,-#_7ee221845da8251d40984304e5680e60 | p3@ENO1-IT1 |
| 7.06e-34 | FFCP PHASE1:Hg19::chr14:85705824..85705844,-#_7ee221845da8251d40984304e5680e60 | p1@ENST00000556016 |
| 7.06e-34 | FFCP PHASE1:Hg19::chr14:61929802..61929817,+#_7ee221845da8251d40984304e5680e60 | p35@PRKCH |
| 7.06e-34 | FFCP PHASE2:Hg19::chr14:85705824..85705844,-#_7ee221845da8251d40984304e5680e60 | p1@ENST00000556016 |
| 7.06e-34 | FFCP PHASE2:Hg19::chr14:61929802..61929817,+#_7ee221845da8251d40984304e5680e60 | p35@PRKCH |
| 7.06e-34 | FFCP PHASE1:Hg19::chr1:8938123..8938135,-#_7ee221845da8251d40984304e5680e60 | p3@ENO1-IT1 |
| 7.48e-30 | FFCP PHASE1:Hg19::chr8:53853672..53853682,-#_aff71c1c150b5847bc7e138309994cd5 | p1@BC033145 |
| 7.48e-30 | FFCP PHASE2:Hg19::chr8:53853672..53853682,-#_aff71c1c150b5847bc7e138309994cd5 | p1@BC033145 |
| 9.99e-30 | FFCP PHASE1:Hg19::chr9:75489043..75489052,-#_72f530a7d56c76cf26709c09c8fd64eb | p1@ENST00000453787 |
| 9.99e-30 | FFCP PHASE2:Hg19::chr9:75489043..75489052,-#_72f530a7d56c76cf26709c09c8fd64eb | p1@ENST00000453787 |
| 1.33e-29 | FFCP PHASE1:Hg19::chr7:43417422..43417435,+#_bcf270a4585fa99b1f8a09525253ed13 | p16@HECW1 |
| 1.33e-29 | FFCP PHASE2:Hg19::chr7:43417422..43417435,+#_bcf270a4585fa99b1f8a09525253ed13 | p16@HECW1 |
| 2.37e-29 | FFCP PHASE1:Hg19::chr21:16374688..16374703,-#_0960bb5529cb87fdb9c298357b68b6cd | p6@NRIP1 |
| 2.37e-29 | FFCP PHASE2:Hg19::chr21:16374688..16374703,-#_0960bb5529cb87fdb9c298357b68b6cd | p6@NRIP1 |
| 3.16e-29 | FFCP PHASE1:Hg19::chr10:91043389..91043400,+#_76cb0f921a6a00f27e7d38a0995490ab | p3@ENST00000444849 |
| 3.16e-29 | FFCP PHASE1:Hg19::chr7:151433200..151433217,-#_76cb0f921a6a00f27e7d38a0995490ab | p31@PRKAG2 |
| 3.16e-29 | FFCP PHASE2:Hg19::chr10:91043389..91043400,+#_76cb0f921a6a00f27e7d38a0995490ab | p3@ENST00000444849 |
| 3.16e-29 | FFCP PHASE2:Hg19::chr7:151433200..151433217,-#_76cb0f921a6a00f27e7d38a0995490ab | p31@PRKAG2 |
| 4.2e-29 | FFCP PHASE1:Hg19::chr12:13025302..13025313,+#_8bdf090ec2d01fee10f876ea065e8824 | p@chr12:13025302..13025313, + |
| 4.2e-29 | FFCP PHASE2:Hg19::chr12:13025302..13025313,+#_8bdf090ec2d01fee10f876ea065e8824 | p@chr12:13025302..13025313, + |
| 5.93e-26 | FFCP PHASE1:Hg19::chr6:125540724..125540736,+#_fa02c448205d268c316f7b4b0e69a059 | p12@TPD52L1 |
| 5.93e-26 | FFCP PHASE2:Hg19::chr6:125540724..125540736,+#_fa02c448205d268c316f7b4b0e69a059 | p12@TPD52L1 |
| 9.79e-26 | FFCP PHASE1:Hg19::chr21:41160614..41160621,+#_d5e96e9e9d4adff27b361889021239af | p@chr21:41160614..41160621, + |
| 9.79e-26 | FFCP PHASE2:Hg19::chr21:41160614..41160621,+#_d5e96e9e9d4adff27b361889021239af | p@chr21:41160614..41160621, + |
| 2.1e-23 | FFCP PHASE1:Hg19::chr14:61929948..61929975,+#_74c0255bdc4528f1a65d5c05e4e32485 | p20@PRKCH |
| 2.1e-23 | FFCP PHASE2:Hg19::chr14:61929948..61929975,+#_74c0255bdc4528f1a65d5c05e4e32485 | p20@PRKCH |
| 4.1e-23 | FFCP PHASE1:Hg19::chr2:16804394..16804406,-#_aaaf9c2fd70676b1ab31771075cbc7a8 | p6@FAM49A |
| 4.1e-23 | FFCP PHASE2:Hg19::chr2:16804394..16804406,-#_aaaf9c2fd70676b1ab31771075cbc7a8 | p6@FAM49A |
| 1.88e-21 | FFCP PHASE1:Hg19::chr3:55002159..55002164,+#_e609fbfa9aa5a18f5c4acb965b351a36 | p@chr3:55002159..55002164, + |
| 1.88e-21 | FFCP PHASE2:Hg19::chr3:55002159..55002164,+#_e609fbfa9aa5a18f5c4acb965b351a36 | p@chr3:55002159..55002164, + |
| 4.22e-21 | FFCP PHASE1:Hg19::chr21:16374660..16374679,-#_31e455717e07c20482bfe43002830fea | p4@NRIP1 |
| 4.22e-21 | FFCP PHASE2:Hg19::chr21:16374660..16374679,-#_31e455717e07c20482bfe43002830fea | p4@NRIP1 |
| 6.31e-21 | FFCP PHASE1:Hg19::chr8:145011875..145011879,+#_c8a5030b1a87e53e66c40ca224899ff6 | p@chr8:145011875..145011879, + |
| 6.31e-21 | FFCP PHASE1:Hg19::chr10:91043499..91043510,+#_c8a5030b1a87e53e66c40ca224899ff6 | p2@ENST00000354541 |
| 6.31e-21 | FFCP PHASE2:Hg19::chr8:145011875..145011879,+#_c8a5030b1a87e53e66c40ca224899ff6 | p@chr8:145011875..145011879, + |
| 6.31e-21 | FFCP PHASE2:Hg19::chr10:91043499..91043510,+#_c8a5030b1a87e53e66c40ca224899ff6 | p2@ENST00000354541 |
| 7.72e-21 | FFCP PHASE1:Hg19::chr11:31014065..31014073,-#_33999d9bfb37e82c3680affd772f26aa | p1@DCDC5 |
| 7.72e-21 | FFCP PHASE2:Hg19::chr11:31014065..31014073,-#_33999d9bfb37e82c3680affd772f26aa | p1@DCDC5 |
| 7.72e-21 | FFCP PHASE2:Hg19::chr8:124692287..124692298,+#_33999d9bfb37e82c3680affd772f26aa | p@chr8:124692287..124692298, + |
| 7.72e-21 | FFCP PHASE2:Hg19::chr15:67524744..67524745,+#_33999d9bfb37e82c3680affd772f26aa | p1@ENST00000497294 |
| 7.72e-21 | FFCP PHASE1:Hg19::chr15:67524744..67524745,+#_33999d9bfb37e82c3680affd772f26aa | p1@ENST00000497294 |
| 7.72e-21 | FFCP PHASE1:Hg19::chr8:124692287..124692298,+#_33999d9bfb37e82c3680affd772f26aa | p@chr8:124692287..124692298, + |
| 9.43e-21 | FFCP PHASE2:Hg19::chr3:150690508..150690520,-#_3a374dffd597f6b18c492ceb5f84d185 | p1@CLRN1 |
| 9.43e-21 | FFCP PHASE1:Hg19::chr3:150690508..150690520,-#_3a374dffd597f6b18c492ceb5f84d185 | p1@CLRN1 |
| 1.3e-19 | FFCP PHASE1:Hg19::chr14:87636652..87636657,-#_95eb48ae6c7dfdf4cf4109c2242d73e0 | p@chr14:87636652..87636657, - |
| 1.3e-19 | FFCP PHASE2:Hg19::chr14:87636652..87636657,-#_95eb48ae6c7dfdf4cf4109c2242d73e0 | p@chr14:87636652..87636657, - |
| 2.25e-19 | FFCP PHASE1:Hg19::chr14:61929781..61929801,+#_81c7825edab1505f3072a32f38548e09 | p27@PRKCH |
| 2.25e-19 | FFCP PHASE2:Hg19::chr14:61929781..61929801,+#_81c7825edab1505f3072a32f38548e09 | p27@PRKCH |
| 3.25e-19 | FFCP PHASE1:Hg19::chrX:106243285..106243290,-#_ec0e5ee81ef4f1d364ba916a2b9028b4 | p8@MORC4 |
| 3.25e-19 | FFCP PHASE2:Hg19::chrX:106243285..106243290,-#_ec0e5ee81ef4f1d364ba916a2b9028b4 | p8@MORC4 |
| 3.25e-19 | FFCP PHASE1:Hg19::chr3:147131290..147131301,+#_ec0e5ee81ef4f1d364ba916a2b9028b4 | p@chr3:147131290..147131301, + |
| 3.25e-19 | FFCP PHASE2:Hg19::chr3:147131290..147131301,+#_ec0e5ee81ef4f1d364ba916a2b9028b4 | p@chr3:147131290..147131301, + |
| 3.91e-19 | FFCP PHASE2:Hg19::chr14:62037117..62037132,+#_ed56314f5b51440414a40d515c6622c4 | p7@FLJ22447 |
| 3.91e-19 | FFCP PHASE1:Hg19::chr14:62037117..62037132,+#_ed56314f5b51440414a40d515c6622c4 | p7@FLJ22447 |
| 4.44e-18 | FFCP PHASE1:Hg19::chr4:150666211..150666212,+#_d635aa3f06c2b21352d523927871b1b7 | p@chr4:150666211..150666212, + |
| 4.44e-18 | FFCP PHASE2:Hg19::chr4:150666211..150666212,+#_d635aa3f06c2b21352d523927871b1b7 | p@chr4:150666211..150666212, + |
| 5.26e-18 | FFCP PHASE1:Hg19::chr1:29586692..29586705,+#_d2bd59e288365c9cbc10e62943361fa5 | p7@PTPRU |
| 5.26e-18 | FFCP PHASE2:Hg19::chr1:29586692..29586705,+#_d2bd59e288365c9cbc10e62943361fa5 | p7@PTPRU |
| 6.23e-18 | FFCP PHASE1:Hg19::chr5:138852090..138852095,+#_11e67a37f27061f3a787282864504655 | p@chr5:138852090..138852095, + |
| 6.23e-18 | FFCP PHASE2:Hg19::chr5:138852090..138852095,+#_11e67a37f27061f3a787282864504655 | p@chr5:138852090..138852095, + |
