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{{DOID
{{DOID
|id=DOID:3493
|alt_id=
|name=signet ring cell adenocarcinoma
|namespace=disease_ontology
|def="An adenocarcinoma that derives_from epithelial cells originating in glandular tissue, which have signet ring appearance." [url:http://en.wikipedia.org/wiki/Signet_ring_cell_carcinoma]
|xref=MSH:D018279;;NCI:C3774;;SNOMEDCT_2010_1_31:189701002;;SNOMEDCT_2010_1_31:189702009;;SNOMEDCT_2010_1_31:87737001;;UMLS_CUI:C0206696
|is_a=DOID:299
|synonym="Signet ring carcinoma NOS (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:189702009];;"Signet Ring cell adenocarcinoma" EXACT [NCI2004_11_17:C3774];;"Signet ring cell carcinoma" EXACT [SNOMEDCT_2005_07_31:189701002];;"Signet ring cell carcinoma (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:87737001]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="An adenocarcinoma that derives_from epithelial cells originating in glandular tissue, which have signet ring appearance." [url:http://en.wikipedia.org/wiki/Signet_ring_cell_carcinoma]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=DOID:3493
|is_a=DOID:299
|is_obsolete=
|located_in=
|located_in=
|name=signet ring cell adenocarcinoma
|namespace=disease_ontology
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|is_obsolete=
|subset=
|preceded_by=
|synonym="Signet ring carcinoma NOS (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:189702009];;"Signet Ring cell adenocarcinoma" EXACT [NCI2004_11_17:C3774];;"Signet ring cell carcinoma" EXACT [SNOMEDCT_2005_07_31:189701002];;"Signet ring cell carcinoma (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:87737001]
|union_of=
|xref=MSH:D018279;;NCI:C3774;;SNOMEDCT_2010_1_31:189701002;;SNOMEDCT_2010_1_31:189702009;;SNOMEDCT_2010_1_31:87737001;;UMLS_CUI:C0206696
}}
}}

Revision as of 10:35, 12 September 2014

Name:signet ring cell adenocarcinoma
Namespace:disease_ontology
Definition:"An adenocarcinoma that derives_from epithelial cells originating in glandular tissue, which have signet ring appearance." [url:http://en.wikipedia.org/wiki/Signet_ring_cell_carcinoma]
Xrefs:
links:

MSH:D018279
NCI:C3774
SNOMEDCT_2010_1_31:189701002
SNOMEDCT_2010_1_31:189702009
SNOMEDCT_2010_1_31:87737001

UMLS_CUI:C0206696
Synonyms: "Signet ring carcinoma NOS (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:189702009]
"Signet Ring cell adenocarcinoma" EXACT [NCI2004_11_17:C3774]
"Signet ring cell carcinoma" EXACT [SNOMEDCT_2005_07_31:189701002]
"Signet ring cell carcinoma (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:87737001]

Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:DOID:299(adenocarcinoma)



Children


is a:FF:10436-106E4 (signet ring carcinoma cell line:Kato III),FF:10483-107A6 (signet ring carcinoma cell line:NUGC-4)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

Mouse (Mus musculus)

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:3493 (signet ring cell adenocarcinoma), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.29e-195FFCP PHASE2:Hg19::chr19:10142131..10142138,-#_c71f6cbd59739f32c7d4ed94b680128cp@chr19:10142131..10142138, -
3.29e-195FFCP PHASE1:Hg19::chr9:85678229..85678237,+#_c71f6cbd59739f32c7d4ed94b680128cp@chr9:85678229..85678237, +
3.29e-195FFCP PHASE1:Hg19::chr19:10142131..10142138,-#_c71f6cbd59739f32c7d4ed94b680128cp@chr19:10142131..10142138, -
3.29e-195FFCP PHASE2:Hg19::chr9:85678229..85678237,+#_c71f6cbd59739f32c7d4ed94b680128cp@chr9:85678229..85678237, +
3.29e-195FFCP PHASE1:Hg19::chr14:54581722..54581743,-#_c71f6cbd59739f32c7d4ed94b680128cp@chr14:54581722..54581743, -
3.29e-195FFCP PHASE2:Hg19::chr19:10142077..10142083,-#_c71f6cbd59739f32c7d4ed94b680128cp@chr19:10142077..10142083, -
3.29e-195FFCP PHASE2:Hg19::chr14:54581722..54581743,-#_c71f6cbd59739f32c7d4ed94b680128cp@chr14:54581722..54581743, -
3.29e-195FFCP PHASE1:Hg19::chr19:10142077..10142083,-#_c71f6cbd59739f32c7d4ed94b680128cp@chr19:10142077..10142083, -
4.61e-131FFCP PHASE1:Hg19::chr7:960422..960430,-#_ad40024469c3ccb9699d93fcf65e569bp20@ADAP1
4.61e-131FFCP PHASE2:Hg19::chr19:10142089..10142103,-#_ad40024469c3ccb9699d93fcf65e569bp@chr19:10142089..10142103, -
4.61e-131FFCP PHASE1:Hg19::chr19:10142089..10142103,-#_ad40024469c3ccb9699d93fcf65e569bp@chr19:10142089..10142103, -
4.61e-131FFCP PHASE2:Hg19::chr7:960422..960430,-#_ad40024469c3ccb9699d93fcf65e569bp20@ADAP1
4.61e-131FFCP PHASE1:Hg19::chr7:960534..960548,-#_ad40024469c3ccb9699d93fcf65e569bp16@ADAP1
4.61e-131FFCP PHASE1:Hg19::chr19:5846676..5846682,-#_ad40024469c3ccb9699d93fcf65e569bp7@FUT3
4.61e-131FFCP PHASE2:Hg19::chr7:960534..960548,-#_ad40024469c3ccb9699d93fcf65e569bp16@ADAP1
4.61e-131FFCP PHASE2:Hg19::chr19:5846676..5846682,-#_ad40024469c3ccb9699d93fcf65e569bp7@FUT3
4.61e-131FFCP PHASE1:Hg19::chr7:960494..960498,-#_ad40024469c3ccb9699d93fcf65e569bp19@ADAP1
4.61e-131FFCP PHASE2:Hg19::chr7:960494..960498,-#_ad40024469c3ccb9699d93fcf65e569bp19@ADAP1
8.99e-131FFCP PHASE1:Hg19::chr19:1753387..1753395,-#_ad9ab35b90a15213b28e1188b86bab5cp@chr19:1753387..1753395, -
8.99e-131FFCP PHASE2:Hg19::chr19:1753387..1753395,-#_ad9ab35b90a15213b28e1188b86bab5cp@chr19:1753387..1753395, -
1.75e-130FFCP PHASE1:Hg19::chr7:34890932..34890934,+#_c51c6f2d62d2b7cc2b7d33f232526691p@chr7:34890932..34890934, +
1.75e-130FFCP PHASE2:Hg19::chr7:34890932..34890934,+#_c51c6f2d62d2b7cc2b7d33f232526691p@chr7:34890932..34890934, +
9.38e-99FFCP PHASE1:Hg19::chr3:5884302..5884308,+#_869b512199d2f5fd59f44082f5efce9ep@chr3:5884302..5884308, +
9.38e-99FFCP PHASE2:Hg19::chr3:5884302..5884308,+#_869b512199d2f5fd59f44082f5efce9ep@chr3:5884302..5884308, +
1.55e-98FFCP PHASE2:Hg19::chr15:60662957..60662966,-#_d956ceebe85a24d2504f821c3f76c665p@chr15:60662957..60662966, -
1.55e-98FFCP PHASE2:Hg19::chr5:496367..496402,-#_d956ceebe85a24d2504f821c3f76c665p@chr5:496367..496402, -
1.55e-98FFCP PHASE2:Hg19::chr20:61299085..61299091,+#_d956ceebe85a24d2504f821c3f76c665p24@SLCO4A1
1.55e-98FFCP PHASE1:Hg19::chr3:169101737..169101746,-#_d956ceebe85a24d2504f821c3f76c665p@chr3:169101737..169101746, -
1.55e-98FFCP PHASE1:Hg19::chr5:167545081..167545101,+#_d956ceebe85a24d2504f821c3f76c665p46@ODZ2
1.55e-98FFCP PHASE2:Hg19::chr9:130913176..130913179,+#_d956ceebe85a24d2504f821c3f76c665p@chr9:130913176..130913179, +
1.55e-98FFCP PHASE1:Hg19::chr17:73091198..73091208,-#_d956ceebe85a24d2504f821c3f76c665p@chr17:73091198..73091208, -
1.55e-98FFCP PHASE1:Hg19::chr6:110282878..110282882,-#_d956ceebe85a24d2504f821c3f76c665p@chr6:110282878..110282882, -
1.55e-98FFCP PHASE1:Hg19::chr17:74459307..74459308,-#_d956ceebe85a24d2504f821c3f76c665p@chr17:74459307..74459308, -
1.55e-98FFCP PHASE2:Hg19::chr3:169101687..169101694,-#_d956ceebe85a24d2504f821c3f76c665p@chr3:169101687..169101694, -
1.55e-98FFCP PHASE1:Hg19::chr10:123378848..123378857,-#_d956ceebe85a24d2504f821c3f76c665p@chr10:123378848..123378857, -
1.55e-98FFCP PHASE2:Hg19::chr2:28762016..28762055,-#_d956ceebe85a24d2504f821c3f76c665p@chr2:28762016..28762055, -
1.55e-98FFCP PHASE1:Hg19::chr2:9324969..9324972,-#_d956ceebe85a24d2504f821c3f76c665p@chr2:9324969..9324972, -
1.55e-98FFCP PHASE1:Hg19::chr17:70417540..70417544,-#_d956ceebe85a24d2504f821c3f76c665p@chr17:70417540..70417544, -
1.55e-98FFCP PHASE2:Hg19::chr10:123313149..123313152,+#_d956ceebe85a24d2504f821c3f76c665p@chr10:123313149..123313152, +
1.55e-98FFCP PHASE1:Hg19::chr10:29217837..29217846,+#_d956ceebe85a24d2504f821c3f76c665p@chr10:29217837..29217846, +
1.55e-98FFCP PHASE1:Hg19::chr10:122520831..122520842,+#_d956ceebe85a24d2504f821c3f76c665p@chr10:122520831..122520842, +
1.55e-98FFCP PHASE1:Hg19::chr19:1654251..1654268,-#_d956ceebe85a24d2504f821c3f76c665p@chr19:1654251..1654268, -
1.55e-98FFCP PHASE2:Hg19::chr1:183976888..183976895,-#_d956ceebe85a24d2504f821c3f76c665p@chr1:183976888..183976895, -
1.55e-98FFCP PHASE1:Hg19::chr3:124209926..124209941,-#_d956ceebe85a24d2504f821c3f76c665p@chr3:124209926..124209941, -
1.55e-98FFCP PHASE2:Hg19::chr20:61298271..61298272,-#_d956ceebe85a24d2504f821c3f76c665p5@ENST00000411824
1.55e-98FFCP PHASE1:Hg19::chr13:74185102..74185107,+#_d956ceebe85a24d2504f821c3f76c665p@chr13:74185102..74185107, +
1.55e-98FFCP PHASE2:Hg19::chr17:74459187..74459193,-#_d956ceebe85a24d2504f821c3f76c665p@chr17:74459187..74459193, -
1.55e-98FFCP PHASE2:Hg19::chr13:74185102..74185107,+#_d956ceebe85a24d2504f821c3f76c665p@chr13:74185102..74185107, +
1.55e-98FFCP PHASE2:Hg19::chr19:1654223..1654233,-#_d956ceebe85a24d2504f821c3f76c665p@chr19:1654223..1654233, -
1.55e-98FFCP PHASE2:Hg19::chr10:123378848..123378857,-#_d956ceebe85a24d2504f821c3f76c665p@chr10:123378848..123378857, -
1.55e-98FFCP PHASE2:Hg19::chr16:85016361..85016372,+#_d956ceebe85a24d2504f821c3f76c665p@chr16:85016361..85016372, +
1.55e-98FFCP PHASE2:Hg19::chr10:29217837..29217846,+#_d956ceebe85a24d2504f821c3f76c665p@chr10:29217837..29217846, +
1.55e-98FFCP PHASE1:Hg19::chrX:96374896..96374901,+#_d956ceebe85a24d2504f821c3f76c665p@chrX:96374896..96374901, +
1.55e-98FFCP PHASE2:Hg19::chr2:121082746..121082759,-#_d956ceebe85a24d2504f821c3f76c665p@chr2:121082746..121082759, -
1.55e-98FFCP PHASE2:Hg19::chr17:56492937..56492946,-#_d956ceebe85a24d2504f821c3f76c665p11@RNF43
1.55e-98FFCP PHASE1:Hg19::chr20:61316967..61316974,-#_d956ceebe85a24d2504f821c3f76c665p@chr20:61316967..61316974, -
1.55e-98FFCP PHASE1:Hg19::chr12:18400438..18400444,-#_d956ceebe85a24d2504f821c3f76c665p@chr12:18400438..18400444, -
1.55e-98FFCP PHASE2:Hg19::chr3:142285096..142285107,-#_d956ceebe85a24d2504f821c3f76c665p@chr3:142285096..142285107, -
1.55e-98FFCP PHASE1:Hg19::chr10:122910650..122910656,+#_d956ceebe85a24d2504f821c3f76c665p@chr10:122910650..122910656, +
1.55e-98FFCP PHASE2:Hg19::chr22:49239060..49239068,+#_d956ceebe85a24d2504f821c3f76c665p@chr22:49239060..49239068, +
1.55e-98FFCP PHASE2:Hg19::chr10:122520831..122520842,+#_d956ceebe85a24d2504f821c3f76c665p@chr10:122520831..122520842, +
1.55e-98FFCP PHASE1:Hg19::chr20:61298173..61298178,-#_d956ceebe85a24d2504f821c3f76c665p4@ENST00000411824
1.55e-98FFCP PHASE2:Hg19::chr1:188011911..188011936,+#_d956ceebe85a24d2504f821c3f76c665p@chr1:188011911..188011936, +
1.55e-98FFCP PHASE1:Hg19::chr6:167684529..167684536,+#_d956ceebe85a24d2504f821c3f76c665p6@UNC93A
1.55e-98FFCP PHASE1:Hg19::chr3:169101774..169101782,-#_d956ceebe85a24d2504f821c3f76c665p@chr3:169101774..169101782, -
1.55e-98FFCP PHASE1:Hg19::chr2:37609861..37609884,+#_d956ceebe85a24d2504f821c3f76c665p@chr2:37609861..37609884, +
1.55e-98FFCP PHASE1:Hg19::chr5:167545123..167545128,+#_d956ceebe85a24d2504f821c3f76c665p60@ODZ2
1.55e-98FFCP PHASE2:Hg19::chr1:178009766..178009803,+#_d956ceebe85a24d2504f821c3f76c665p@chr1:178009766..178009803, +
1.55e-98FFCP PHASE1:Hg19::chr21:25744883..25744889,-#_d956ceebe85a24d2504f821c3f76c665p@chr21:25744883..25744889, -
1.55e-98FFCP PHASE1:Hg19::chr17:74459348..74459359,-#_d956ceebe85a24d2504f821c3f76c665p@chr17:74459348..74459359, -
1.55e-98FFCP PHASE2:Hg19::chr6:110282878..110282882,-#_d956ceebe85a24d2504f821c3f76c665p@chr6:110282878..110282882, -
1.55e-98FFCP PHASE1:Hg19::chr17:50828983..50828988,+#_d956ceebe85a24d2504f821c3f76c665p@chr17:50828983..50828988, +
1.55e-98FFCP PHASE2:Hg19::chr3:169101737..169101746,-#_d956ceebe85a24d2504f821c3f76c665p@chr3:169101737..169101746, -
1.55e-98FFCP PHASE1:Hg19::chr1:183976829..183976846,-#_d956ceebe85a24d2504f821c3f76c665p@chr1:183976829..183976846, -
1.55e-98FFCP PHASE2:Hg19::chr5:167545081..167545101,+#_d956ceebe85a24d2504f821c3f76c665p46@ODZ2
1.55e-98FFCP PHASE2:Hg19::chr10:122910650..122910656,+#_d956ceebe85a24d2504f821c3f76c665p@chr10:122910650..122910656, +
1.55e-98FFCP PHASE1:Hg19::chr15:42186200..42186205,-#_d956ceebe85a24d2504f821c3f76c665p3@SPTBN5
1.55e-98FFCP PHASE1:Hg19::chr10:29217861..29217870,+#_d956ceebe85a24d2504f821c3f76c665p@chr10:29217861..29217870, +
1.55e-98FFCP PHASE2:Hg19::chr2:9324969..9324972,-#_d956ceebe85a24d2504f821c3f76c665p@chr2:9324969..9324972, -
1.55e-98FFCP PHASE1:Hg19::chr10:122520854..122520858,+#_d956ceebe85a24d2504f821c3f76c665p@chr10:122520854..122520858, +
1.55e-98FFCP PHASE1:Hg19::chr20:61278219..61278228,-#_d956ceebe85a24d2504f821c3f76c665p@chr20:61278219..61278228, -
1.55e-98FFCP PHASE2:Hg19::chr17:74459285..74459291,-#_d956ceebe85a24d2504f821c3f76c665p@chr17:74459285..74459291, -
1.55e-98FFCP PHASE1:Hg19::chr22:46406849..46406852,+#_d956ceebe85a24d2504f821c3f76c665p@chr22:46406849..46406852, +
1.55e-98FFCP PHASE2:Hg19::chr19:1654251..1654268,-#_d956ceebe85a24d2504f821c3f76c665p@chr19:1654251..1654268, -
1.55e-98FFCP PHASE2:Hg19::chr3:124209926..124209941,-#_d956ceebe85a24d2504f821c3f76c665p@chr3:124209926..124209941, -
1.55e-98FFCP PHASE2:Hg19::chr10:29217861..29217870,+#_d956ceebe85a24d2504f821c3f76c665p@chr10:29217861..29217870, +
1.55e-98FFCP PHASE1:Hg19::chr5:499786..499794,-#_d956ceebe85a24d2504f821c3f76c665p@chr5:499786..499794, -
1.55e-98FFCP PHASE1:Hg19::chr13:97775112..97775117,+#_d956ceebe85a24d2504f821c3f76c665p@chr13:97775112..97775117, +
1.55e-98FFCP PHASE1:Hg19::chr10:123000012..123000015,+#_d956ceebe85a24d2504f821c3f76c665p@chr10:123000012..123000015, +
1.55e-98FFCP PHASE2:Hg19::chr12:18400438..18400444,-#_d956ceebe85a24d2504f821c3f76c665p@chr12:18400438..18400444, -
1.55e-98FFCP PHASE2:Hg19::chrX:96374896..96374901,+#_d956ceebe85a24d2504f821c3f76c665p@chrX:96374896..96374901, +
1.55e-98FFCP PHASE2:Hg19::chr17:51139124..51139129,+#_d956ceebe85a24d2504f821c3f76c665p@chr17:51139124..51139129, +
1.55e-98FFCP PHASE2:Hg19::chr10:122520854..122520858,+#_d956ceebe85a24d2504f821c3f76c665p@chr10:122520854..122520858, +
1.55e-98FFCP PHASE1:Hg19::chr20:61298207..61298221,-#_d956ceebe85a24d2504f821c3f76c665p2@ENST00000411824
1.55e-98FFCP PHASE2:Hg19::chr20:61316967..61316974,-#_d956ceebe85a24d2504f821c3f76c665p@chr20:61316967..61316974, -
1.55e-98FFCP PHASE2:Hg19::chr17:70619903..70619909,+#_d956ceebe85a24d2504f821c3f76c665p@chr17:70619903..70619909, +
1.55e-98FFCP PHASE2:Hg19::chr15:42186200..42186205,-#_d956ceebe85a24d2504f821c3f76c665p3@SPTBN5
1.55e-98FFCP PHASE2:Hg19::chr6:167684529..167684536,+#_d956ceebe85a24d2504f821c3f76c665p6@UNC93A
1.55e-98FFCP PHASE1:Hg19::chr17:56492937..56492946,-#_d956ceebe85a24d2504f821c3f76c665p11@RNF43
1.55e-98FFCP PHASE1:Hg19::chr9:139312981..139312986,+#_d956ceebe85a24d2504f821c3f76c665p4@PMPCA

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