Personal tools

DOID:154: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{DOID
{{DOID
|id=DOID:154
|alt_id=DOID:1905
|name=mixed cell type cancer
|namespace=disease_ontology
|def="A cell type cancer that has_material_basis_in abnormally proliferating cells derived_from two germinal layers of tissue." [url:http://medical-dictionary.thefreedictionary.com/mixed+neoplasm]
|xref=MSH:D018198;;NCI:C3729;;SNOMEDCT_2010_1_31:189802003;;SNOMEDCT_2010_1_31:8145008;;UMLS_CUI:C0206625;;UMLS_CUI:C1368354
|is_a=DOID:0050687
|synonym="malignant mixed cancer" EXACT [];;"malignant mixed neoplasm" EXACT [NCI2004_11_17:C3729];;"malignant mixed tumor" RELATED [];;"mixed neoplasm" RELATED [];;"mixed tumor" EXACT [NCI2004_11_17:C6930];;"mixed tumor, malignant (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:8145008];;"mixed tumor, malignant, NOS (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:189802003]
|comment=
|comment=
|alt_id=DOID:1905
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A cell type cancer that has_material_basis_in abnormally proliferating cells derived_from two germinal layers of tissue." [url:http://medical-dictionary.thefreedictionary.com/mixed+neoplasm]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=DOID:154
|is_a=DOID:0050687
|is_obsolete=
|located_in=
|located_in=
|name=mixed cell type cancer
|namespace=disease_ontology
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|is_obsolete=
|subset=
|preceded_by=
|synonym="malignant mixed cancer" EXACT [];;"malignant mixed neoplasm" EXACT [NCI2004_11_17:C3729];;"malignant mixed tumor" RELATED [];;"mixed neoplasm" RELATED [];;"mixed tumor" EXACT [NCI2004_11_17:C6930];;"mixed tumor, malignant (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:8145008];;"mixed tumor, malignant, NOS (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:189802003]
|union_of=
|xref=MSH:D018198;;NCI:C3729;;SNOMEDCT_2010_1_31:189802003;;SNOMEDCT_2010_1_31:8145008;;UMLS_CUI:C0206625;;UMLS_CUI:C1368354
}}
}}

Revision as of 10:33, 12 September 2014

Name:mixed cell type cancer
Namespace:disease_ontology
Definition:"A cell type cancer that has_material_basis_in abnormally proliferating cells derived_from two germinal layers of tissue." [url:http://medical-dictionary.thefreedictionary.com/mixed+neoplasm]
Xrefs:
links:

MSH:D018198
NCI:C3729
SNOMEDCT_2010_1_31:189802003
SNOMEDCT_2010_1_31:8145008
UMLS_CUI:C0206625

UMLS_CUI:C1368354
Synonyms: "malignant mixed cancer" EXACT []
"malignant mixed neoplasm" EXACT [NCI2004_11_17:C3729]
"malignant mixed tumor" RELATED []
"mixed neoplasm" RELATED []
"mixed tumor" EXACT [NCI2004_11_17:C6930]
"mixed tumor, malignant (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:8145008]
"mixed tumor, malignant, NOS (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:189802003]
Alt_id: DOID:1905

Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:DOID:0050687(cell type cancer)



Children


is a:DOID:4236 (carcinosarcoma)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

Mouse (Mus musculus)

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:154 (mixed cell type cancer), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.55e-98FFCP PHASE2:Hg19::chr7:146741072..146741077,+#_a833f1bb3702328918f74bb006a3484cp@chr7:146741072..146741077, +
1.55e-98FFCP PHASE1:Hg19::chr7:146741072..146741077,+#_a833f1bb3702328918f74bb006a3484cp@chr7:146741072..146741077, +
1.55e-98FFCP PHASE2:Hg19::chr18:63096932..63096933,+#_a833f1bb3702328918f74bb006a3484cp@chr18:63096932..63096933, +
1.55e-98FFCP PHASE1:Hg19::chr18:63096932..63096933,+#_a833f1bb3702328918f74bb006a3484cp@chr18:63096932..63096933, +
4.52e-50FFCP PHASE2:Hg19::chr2:156009264..156009270,-#_0899bc8f0b4111b174f9a60c1d9ee7fap@chr2:156009264..156009270, -
4.52e-50FFCP PHASE1:Hg19::chr2:156009264..156009270,-#_0899bc8f0b4111b174f9a60c1d9ee7fap@chr2:156009264..156009270, -
4.52e-50FFCP PHASE2:Hg19::chr6:5999833..5999837,-#_0899bc8f0b4111b174f9a60c1d9ee7fap@chr6:5999833..5999837, -
4.52e-50FFCP PHASE1:Hg19::chr6:5999833..5999837,-#_0899bc8f0b4111b174f9a60c1d9ee7fap@chr6:5999833..5999837, -
4.52e-50FFCP PHASE2:Hg19::chrX:31582142..31582159,+#_0899bc8f0b4111b174f9a60c1d9ee7fap@chrX:31582142..31582159, +
4.52e-50FFCP PHASE1:Hg19::chrX:31582142..31582159,+#_0899bc8f0b4111b174f9a60c1d9ee7fap@chrX:31582142..31582159, +
1.22e-44FFCP PHASE1:Hg19::chr13:37575605..37575619,+#_a96cbd2cde36e6b00d63b989c4dc412ap4@EXOSC8
1.22e-44FFCP PHASE2:Hg19::chr13:37575605..37575619,+#_a96cbd2cde36e6b00d63b989c4dc412ap4@EXOSC8
5.99e-41FFCP PHASE1:Hg19::chr12:57619653..57619657,+#_1428dec201c586ad5b0fe19f4e11d70fp3@NXPH4
5.99e-41FFCP PHASE2:Hg19::chr12:57619653..57619657,+#_1428dec201c586ad5b0fe19f4e11d70fp3@NXPH4
3.61e-34FFCP PHASE2:Hg19::chr18:63091237..63091256,+#_d2cf12f8e46a728335bcb5d31b4e9541p@chr18:63091237..63091256, +
3.61e-34FFCP PHASE2:Hg19::chr9:22141969..22141972,+#_d2cf12f8e46a728335bcb5d31b4e9541p@chr9:22141969..22141972, +
3.61e-34FFCP PHASE1:Hg19::chr9:22141969..22141972,+#_d2cf12f8e46a728335bcb5d31b4e9541p@chr9:22141969..22141972, +
3.61e-34FFCP PHASE1:Hg19::chr18:63091237..63091256,+#_d2cf12f8e46a728335bcb5d31b4e9541p@chr18:63091237..63091256, +
5.04e-34FFCP PHASE2:Hg19::chr6:144724124..144724133,+#_33251e1485d38272a66bfbff14dac100p@chr6:144724124..144724133, +
5.04e-34FFCP PHASE1:Hg19::chr6:144724124..144724133,+#_33251e1485d38272a66bfbff14dac100p@chr6:144724124..144724133, +
5.04e-34FFCP PHASE2:Hg19::chr4:80976547..80976566,-#_33251e1485d38272a66bfbff14dac100p30@ANTXR2
5.04e-34FFCP PHASE1:Hg19::chr4:80976547..80976566,-#_33251e1485d38272a66bfbff14dac100p30@ANTXR2
5.04e-34FFCP PHASE1:Hg19::chr12:57882498..57882504,-#_33251e1485d38272a66bfbff14dac100p39@ARHGAP9
5.04e-34FFCP PHASE2:Hg19::chr12:57882498..57882504,-#_33251e1485d38272a66bfbff14dac100p39@ARHGAP9
7.05e-34FFCP PHASE1:Hg19::chr15:75114185..75114190,+#_af7ed254dd532b9df57e4e5ce786788dp@chr15:75114185..75114190, +
7.05e-34FFCP PHASE2:Hg19::chr15:75114185..75114190,+#_af7ed254dd532b9df57e4e5ce786788dp@chr15:75114185..75114190, +
7.05e-34FFCP PHASE2:Hg19::chr2:38466814..38466823,-#_af7ed254dd532b9df57e4e5ce786788dp8@ENST00000450854
7.05e-34FFCP PHASE1:Hg19::chr2:38466814..38466823,-#_af7ed254dd532b9df57e4e5ce786788dp8@ENST00000450854
7.05e-34FFCP PHASE2:Hg19::chr6:33145331..33145378,-#_af7ed254dd532b9df57e4e5ce786788dp@chr6:33145331..33145378, -
7.05e-34FFCP PHASE1:Hg19::chr6:33145331..33145378,-#_af7ed254dd532b9df57e4e5ce786788dp@chr6:33145331..33145378, -
7.05e-34FFCP PHASE1:Hg19::chr15:32969649..32969656,+#_af7ed254dd532b9df57e4e5ce786788dp14@SCG5
7.05e-34FFCP PHASE2:Hg19::chr15:32969649..32969656,+#_af7ed254dd532b9df57e4e5ce786788dp14@SCG5
8.05e-30FFCP PHASE1:Hg19::chr12:57619841..57619852,+#_5253f8f5d4ea8fed5681af0382a77c7cp@chr12:57619841..57619852, +
8.05e-30FFCP PHASE2:Hg19::chr12:57619841..57619852,+#_5253f8f5d4ea8fed5681af0382a77c7cp@chr12:57619841..57619852, +
4.08e-26FFCP PHASE1:Hg19::chr16:56380852..56380864,+#_73ab1771115ab5b86e15382d2710e04fp@chr16:56380852..56380864, +
4.08e-26FFCP PHASE2:Hg19::chr16:56380852..56380864,+#_73ab1771115ab5b86e15382d2710e04fp@chr16:56380852..56380864, +
4.32e-26FFCP PHASE2:Hg19::chr6:27198345..27198350,-#_1e076d94566eeed0b0952feabd7f0286p@chr6:27198345..27198350, -
4.32e-26FFCP PHASE1:Hg19::chr6:27198345..27198350,-#_1e076d94566eeed0b0952feabd7f0286p@chr6:27198345..27198350, -
5.56e-26FFCP PHASE2:Hg19::chr2:187615989..187616000,+#_2bfc781540a0806b7f0498e81e6be2f4p@chr2:187615989..187616000, +
5.56e-26FFCP PHASE2:Hg19::chr7:81635124..81635130,-#_2bfc781540a0806b7f0498e81e6be2f4p18@CACNA2D1
5.56e-26FFCP PHASE1:Hg19::chr7:81635124..81635130,-#_2bfc781540a0806b7f0498e81e6be2f4p18@CACNA2D1
5.56e-26FFCP PHASE1:Hg19::chr2:187615989..187616000,+#_2bfc781540a0806b7f0498e81e6be2f4p@chr2:187615989..187616000, +
5.56e-26FFCP PHASE1:Hg19::chr11:22359292..22359301,+#_2bfc781540a0806b7f0498e81e6be2f4p9@SLC17A6
5.56e-26FFCP PHASE2:Hg19::chr11:22359292..22359301,+#_2bfc781540a0806b7f0498e81e6be2f4p9@SLC17A6
7.14e-26FFCP PHASE2:Hg19::chrX:89176902..89176913,+#_153ce32ac7b1be37d85df5847225417bp1@TGIF2LX
7.14e-26FFCP PHASE1:Hg19::chrX:89176902..89176913,+#_153ce32ac7b1be37d85df5847225417bp1@TGIF2LX
7.14e-26FFCP PHASE2:Hg19::chr2:187618737..187618746,+#_153ce32ac7b1be37d85df5847225417bp@chr2:187618737..187618746, +
7.14e-26FFCP PHASE1:Hg19::chr2:187618737..187618746,+#_153ce32ac7b1be37d85df5847225417bp@chr2:187618737..187618746, +
9.18e-26FFCP PHASE2:Hg19::chr9:16515712..16515717,-#_12982e9875d0fb1792c2b202ac393576p@chr9:16515712..16515717, -
9.18e-26FFCP PHASE2:Hg19::chr3:165528391..165528411,+#_12982e9875d0fb1792c2b202ac393576p@chr3:165528391..165528411, +
9.18e-26FFCP PHASE1:Hg19::chr9:16515712..16515717,-#_12982e9875d0fb1792c2b202ac393576p@chr9:16515712..16515717, -
9.18e-26FFCP PHASE1:Hg19::chr3:165528391..165528411,+#_12982e9875d0fb1792c2b202ac393576p@chr3:165528391..165528411, +
9.18e-26FFCP PHASE2:Hg19::chr3:170424675..170424679,-#_12982e9875d0fb1792c2b202ac393576p@chr3:170424675..170424679, -
9.18e-26FFCP PHASE1:Hg19::chr3:170424675..170424679,-#_12982e9875d0fb1792c2b202ac393576p@chr3:170424675..170424679, -
9.18e-26FFCP PHASE1:Hg19::chr12:15202725..15202774,+#_12982e9875d0fb1792c2b202ac393576p@chr12:15202725..15202774, +
9.18e-26FFCP PHASE2:Hg19::chr12:15202725..15202774,+#_12982e9875d0fb1792c2b202ac393576p@chr12:15202725..15202774, +
3.91e-23FFCP PHASE1:Hg19::chr14:20813564..20813582,+#_31eed6fd823c0f42f99811e29f4d4e20p@chr14:20813564..20813582, +
3.91e-23FFCP PHASE2:Hg19::chr14:20813564..20813582,+#_31eed6fd823c0f42f99811e29f4d4e20p@chr14:20813564..20813582, +
5.41e-22FFCP PHASE2:Hg19::chr5:180708225..180708231,-#_35b3ae5b1a233941e7072ca699e3b5a1p@chr5:180708225..180708231, -
5.41e-22FFCP PHASE1:Hg19::chr5:180708225..180708231,-#_35b3ae5b1a233941e7072ca699e3b5a1p@chr5:180708225..180708231, -
3.11e-21FFCP PHASE2:Hg19::chr7:146244949..146244953,+#_6b567ab1d5bfec587881dbec4ffb41d2p@chr7:146244949..146244953, +
3.11e-21FFCP PHASE1:Hg19::chr7:146244949..146244953,+#_6b567ab1d5bfec587881dbec4ffb41d2p@chr7:146244949..146244953, +
3.81e-21FFCP PHASE2:Hg19::chr6:144724186..144724199,+#_5269de4b2ef6bf194ed2ada5df033874p@chr6:144724186..144724199, +
3.81e-21FFCP PHASE1:Hg19::chr6:144724186..144724199,+#_5269de4b2ef6bf194ed2ada5df033874p@chr6:144724186..144724199, +
4.66e-21FFCP PHASE2:Hg19::chr17:70026911..70026922,+#_7854d393b7cbdecdbee6808bfba2567cp1@uc002jit.1
4.66e-21FFCP PHASE2:Hg19::chr4:80976472..80976514,-#_7854d393b7cbdecdbee6808bfba2567cp33@ANTXR2
4.66e-21FFCP PHASE1:Hg19::chr4:80976472..80976514,-#_7854d393b7cbdecdbee6808bfba2567cp33@ANTXR2
4.66e-21FFCP PHASE2:Hg19::chr6:83938642..83938649,-#_7854d393b7cbdecdbee6808bfba2567cp7@ME1
4.66e-21FFCP PHASE1:Hg19::chr6:83938642..83938649,-#_7854d393b7cbdecdbee6808bfba2567cp7@ME1
4.66e-21FFCP PHASE1:Hg19::chr17:70026911..70026922,+#_7854d393b7cbdecdbee6808bfba2567cp1@uc002jit.1
5.2e-21FFCP PHASE2:Hg19::chr4:19458597..19458623,-#_dd1007f725ba7cd783488d355896e957p1@ENST00000505347
5.2e-21FFCP PHASE1:Hg19::chr4:19458597..19458623,-#_dd1007f725ba7cd783488d355896e957p1@ENST00000505347
5.7e-21FFCP PHASE1:Hg19::chr11:811679..811684,+#_6e7caa96e950dc2075542a527d59d3bbp2@SNORA52
5.7e-21FFCP PHASE2:Hg19::chr11:811679..811684,+#_6e7caa96e950dc2075542a527d59d3bbp2@SNORA52
5.7e-21FFCP PHASE2:Hg19::chr4:80116986..80116991,+#_6e7caa96e950dc2075542a527d59d3bbp1@ENST00000507476, p1@ENST00000507761, p1@ENST00000515597, p1@uc003hls.2
5.7e-21FFCP PHASE1:Hg19::chr4:80116986..80116991,+#_6e7caa96e950dc2075542a527d59d3bbp1@ENST00000507476, p1@ENST00000507761, p1@ENST00000515597, p1@uc003hls.2
5.7e-21FFCP PHASE2:Hg19::chr2:118145500..118145514,-#_6e7caa96e950dc2075542a527d59d3bbp@chr2:118145500..118145514, -
5.7e-21FFCP PHASE1:Hg19::chr2:118145500..118145514,-#_6e7caa96e950dc2075542a527d59d3bbp@chr2:118145500..118145514, -
5.7e-21FFCP PHASE2:Hg19::chr1:149875845..149875874,-#_6e7caa96e950dc2075542a527d59d3bbp@chr1:149875845..149875874, -
5.7e-21FFCP PHASE1:Hg19::chr1:149875845..149875874,-#_6e7caa96e950dc2075542a527d59d3bbp@chr1:149875845..149875874, -
5.7e-21FFCP PHASE2:Hg19::chr9:22216803..22216809,-#_6e7caa96e950dc2075542a527d59d3bbp@chr9:22216803..22216809, -
5.7e-21FFCP PHASE1:Hg19::chr9:22216803..22216809,-#_6e7caa96e950dc2075542a527d59d3bbp@chr9:22216803..22216809, -
6.96e-21FFCP PHASE2:Hg19::chr15:75114132..75114162,+#_ccd78e0bcf8088ff3587764926a1fa35p@chr15:75114132..75114162, +
6.96e-21FFCP PHASE1:Hg19::chr2:182543992..182543996,-#_ccd78e0bcf8088ff3587764926a1fa35p10@NEUROD1
6.96e-21FFCP PHASE2:Hg19::chr2:70900377..70900392,+#_ccd78e0bcf8088ff3587764926a1fa35p@chr2:70900377..70900392, +
6.96e-21FFCP PHASE1:Hg19::chr2:70900377..70900392,+#_ccd78e0bcf8088ff3587764926a1fa35p@chr2:70900377..70900392, +
6.96e-21FFCP PHASE2:Hg19::chr3:47088671..47088676,-#_ccd78e0bcf8088ff3587764926a1fa35p28@SETD2
6.96e-21FFCP PHASE1:Hg19::chr3:47088671..47088676,-#_ccd78e0bcf8088ff3587764926a1fa35p28@SETD2
6.96e-21FFCP PHASE2:Hg19::chr2:182543992..182543996,-#_ccd78e0bcf8088ff3587764926a1fa35p10@NEUROD1
6.96e-21FFCP PHASE1:Hg19::chr15:75114132..75114162,+#_ccd78e0bcf8088ff3587764926a1fa35p@chr15:75114132..75114162, +
9.6e-20FFCP PHASE1:Hg19::chr11:31832207..31832226,-#_77b560e4db923341faeadbca4f2449dcp12@PAX6
9.6e-20FFCP PHASE2:Hg19::chr11:31832207..31832226,-#_77b560e4db923341faeadbca4f2449dcp12@PAX6
5.48e-18FFCP PHASE1:Hg19::chr6:27198375..27198387,-#_9f552088501b4a803711af91d3399d97p@chr6:27198375..27198387, -
5.48e-18FFCP PHASE2:Hg19::chr7:146192665..146192668,+#_9f552088501b4a803711af91d3399d97p@chr7:146192665..146192668, +
5.48e-18FFCP PHASE1:Hg19::chr7:146192665..146192668,+#_9f552088501b4a803711af91d3399d97p@chr7:146192665..146192668, +
5.48e-18FFCP PHASE2:Hg19::chr6:27198375..27198387,-#_9f552088501b4a803711af91d3399d97p@chr6:27198375..27198387, -
6.48e-18FFCP PHASE1:Hg19::chr7:54614335..54614351,+#_5ad22da5f2f50597b59303591583adc8p19@VSTM2A
6.48e-18FFCP PHASE2:Hg19::chr7:54614335..54614351,+#_5ad22da5f2f50597b59303591583adc8p19@VSTM2A
7.67e-18FFCP PHASE2:Hg19::chr13:72050337..72050348,-#_98240227436c40f67cd4dfe6d9072619p@chr13:72050337..72050348, -
7.67e-18FFCP PHASE2:Hg19::chr6:150016353..150016358,-#_98240227436c40f67cd4dfe6d9072619p@chr6:150016353..150016358, -

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=DOID:154&oldid=3272296"