UBERON:0007123: Difference between revisions
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|def="The second pouch between the second and third arches. Contributes to the middle ear, epithelial lining of Crypts (spaces) of the palatine tonsils, supplied by the facial nerve[WP]" [PMID:16313389, Wikipedia:Pharyngeal_pouch_(embryology)#Second_pouch] | |def="The second pouch between the second and third arches. Contributes to the middle ear, epithelial lining of Crypts (spaces) of the palatine tonsils, supplied by the facial nerve[WP]" [PMID:16313389, Wikipedia:Pharyngeal_pouch_(embryology)#Second_pouch] | ||
|xref=AAO:0011115;;EFO:0003633;;EHDAA2:0000061;;EMAPA:16275;;ncithesaurus:Second_Pharyngeal_Pouch;;RETIRED_EHDAA2:0000060;;SCTID:345349000;;VHOG:0000967;;XAO:0000247;;ZFA:0001130 | |xref=AAO:0011115;;EFO:0003633;;EHDAA2:0000061;;EMAPA:16275;;ncithesaurus:Second_Pharyngeal_Pouch;;RETIRED_EHDAA2:0000060;;SCTID:345349000;;TAO:0001130;;VHOG:0000967;;XAO:0000247;;ZFA:0001130 | ||
|is_a=UBERON:0004117 | |is_a=UBERON:0004117 | ||
|synonym="2nd arch branchial pouch" EXACT [RETIRED_EHDAA2:0000060];;"2nd arch branchial pouch endoderm" EXACT [EHDAA2:0000061];;"pharyngeal pouches 2" EXACT PLURAL [ZFA:0001130];;"second arch pharyngeal pouch" EXACT [OBOL:automatic];;"second visceral pouch" EXACT [XAO:0000247];;"visceral pouch 2" EXACT [XAO:0000247] | |synonym="2nd arch branchial pouch" EXACT [RETIRED_EHDAA2:0000060];;"2nd arch branchial pouch endoderm" EXACT [EHDAA2:0000061];;"pharyngeal pouches 2" EXACT PLURAL [ZFA:0001130];;"second arch pharyngeal pouch" EXACT [OBOL:automatic];;"second visceral pouch" EXACT [XAO:0000247];;"visceral pouch 2" EXACT [XAO:0000247] | ||
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|obo_creation_date= | |obo_creation_date= | ||
|subset=vertebrate_core | |subset=vertebrate_core | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
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|located_in= | |located_in= | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Second of the pharyngeal (endodermal) evaginations between the visceral arches from which the Eustachian tube is derived; pouches 2-4 open as gill slits.[AAO]" xsd:string | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 17:07, 26 June 2012
| Name: | pharyngeal pouch 2 | ||
|---|---|---|---|
| Definition: | "The second pouch between the second and third arches. Contributes to the middle ear, epithelial lining of Crypts (spaces) of the palatine tonsils, supplied by the facial nerve[WP]" [PMID:16313389, Wikipedia:Pharyngeal_pouch_(embryology)#Second_pouch] | ||
| Xrefs: |
| ||
| Synonyms: |
"2nd arch branchial pouch" EXACT [RETIRED_EHDAA2:0000060] "2nd arch branchial pouch endoderm" EXACT [EHDAA2:0000061] "pharyngeal pouches 2" EXACT PLURAL [ZFA:0001130] "second arch pharyngeal pouch" EXACT [OBOL:automatic] "second visceral pouch" EXACT [XAO:0000247] "visceral pouch 2" EXACT [XAO:0000247] | ||
| Alt_id: | UBERON:0005715 | ||
| Subset: | vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0004117(pharyngeal pouch) |
|---|
Children
| develops from: | UBERON:0003091 (thyroid primordium) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0007123 (pharyngeal pouch 2), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 7.76e-118 | FFCP PHASE2:Hg19::chr8:11333461..11333472,-#_f03b86f4e725aad6a95700d7548036da | p@chr8:11333461..11333472, - |
| 7.76e-118 | FFCP PHASE1:Hg19::chr8:11333461..11333472,-#_f03b86f4e725aad6a95700d7548036da | p@chr8:11333461..11333472, - |
| 6.64e-89 | FFCP PHASE2:Hg19::chr8:11333445..11333459,-#_356d78224cc757cca03c177654641f15 | p@chr8:11333445..11333459, - |
| 6.64e-89 | FFCP PHASE1:Hg19::chr8:11333445..11333459,-#_356d78224cc757cca03c177654641f15 | p@chr8:11333445..11333459, - |
| 3.18e-79 | FFCP PHASE1:Hg19::chr14:36645825..36645840,-#_bd69ee190bbaf061f2cbb40e5e443bc8 | p5@ENST00000556013 |
| 3.18e-79 | FFCP PHASE2:Hg19::chr14:36645825..36645840,-#_bd69ee190bbaf061f2cbb40e5e443bc8 | p5@ENST00000556013 |
| 3.49e-79 | FFCP PHASE1:Hg19::chr7:107301340..107301345,+#_20a8e25dd036699ac7e17ab087a84a3f | p13@SLC26A4 |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:133898763..133898768,-#_20a8e25dd036699ac7e17ab087a84a3f | p@chr8:133898763..133898768, - |
| 3.49e-79 | FFCP PHASE1:Hg19::chr9:100615454..100615457,-#_20a8e25dd036699ac7e17ab087a84a3f | p@chr9:100615454..100615457, - |
| 3.49e-79 | FFCP PHASE1:Hg19::chr2:134788828..134788834,-#_20a8e25dd036699ac7e17ab087a84a3f | p@chr2:134788828..134788834, - |
| 3.49e-79 | FFCP PHASE2:Hg19::chr2:1417344..1417367,+#_20a8e25dd036699ac7e17ab087a84a3f | p@chr2:1417344..1417367, + |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:133948038..133948045,+#_20a8e25dd036699ac7e17ab087a84a3f | p@chr8:133948038..133948045, + |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:133895229..133895236,-#_20a8e25dd036699ac7e17ab087a84a3f | p@chr8:133895229..133895236, - |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:133906121..133906132,+#_20a8e25dd036699ac7e17ab087a84a3f | p@chr8:133906121..133906132, + |
| 3.49e-79 | FFCP PHASE1:Hg19::chr19:20473429..20473445,+#_20a8e25dd036699ac7e17ab087a84a3f | p@chr19:20473429..20473445, + |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:133900347..133900354,-#_20a8e25dd036699ac7e17ab087a84a3f | p@chr8:133900347..133900354, - |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:133883693..133883699,-#_20a8e25dd036699ac7e17ab087a84a3f | p@chr8:133883693..133883699, - |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:133900606..133900611,+#_20a8e25dd036699ac7e17ab087a84a3f | p@chr8:133900606..133900611, + |
| 3.49e-79 | FFCP PHASE2:Hg19::chr9:100615454..100615457,-#_20a8e25dd036699ac7e17ab087a84a3f | p@chr9:100615454..100615457, - |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:134125750..134125765,+#_20a8e25dd036699ac7e17ab087a84a3f | p@chr8:134125750..134125765, + |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:133894753..133894756,-#_20a8e25dd036699ac7e17ab087a84a3f | p@chr8:133894753..133894756, - |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:133981720..133981727,+#_20a8e25dd036699ac7e17ab087a84a3f | p21@TG |
| 3.49e-79 | FFCP PHASE1:Hg19::chr9:100616714..100616732,+#_20a8e25dd036699ac7e17ab087a84a3f | p@chr9:100616714..100616732, + |
| 3.49e-79 | FFCP PHASE1:Hg19::chr2:1417344..1417367,+#_20a8e25dd036699ac7e17ab087a84a3f | p@chr2:1417344..1417367, + |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:134107312..134107315,+#_20a8e25dd036699ac7e17ab087a84a3f | p46@TG |
| 3.49e-79 | FFCP PHASE2:Hg19::chr19:20473429..20473445,+#_20a8e25dd036699ac7e17ab087a84a3f | p@chr19:20473429..20473445, + |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:133898763..133898768,-#_20a8e25dd036699ac7e17ab087a84a3f | p@chr8:133898763..133898768, - |
| 3.49e-79 | FFCP PHASE2:Hg19::chr7:107301406..107301418,+#_20a8e25dd036699ac7e17ab087a84a3f | p5@SLC26A4 |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:133883693..133883699,-#_20a8e25dd036699ac7e17ab087a84a3f | p@chr8:133883693..133883699, - |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:133900606..133900611,+#_20a8e25dd036699ac7e17ab087a84a3f | p@chr8:133900606..133900611, + |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:133885307..133885312,+#_20a8e25dd036699ac7e17ab087a84a3f | p@chr8:133885307..133885312, + |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:133906121..133906132,+#_20a8e25dd036699ac7e17ab087a84a3f | p@chr8:133906121..133906132, + |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:133895057..133895065,+#_20a8e25dd036699ac7e17ab087a84a3f | p@chr8:133895057..133895065, + |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:134125750..134125765,+#_20a8e25dd036699ac7e17ab087a84a3f | p@chr8:134125750..134125765, + |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:133981720..133981727,+#_20a8e25dd036699ac7e17ab087a84a3f | p21@TG |
| 3.49e-79 | FFCP PHASE2:Hg19::chr9:100616714..100616732,+#_20a8e25dd036699ac7e17ab087a84a3f | p@chr9:100616714..100616732, + |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:133894753..133894756,-#_20a8e25dd036699ac7e17ab087a84a3f | p@chr8:133894753..133894756, - |
| 3.49e-79 | FFCP PHASE2:Hg19::chr2:1457477..1457487,+#_20a8e25dd036699ac7e17ab087a84a3f | p@chr2:1457477..1457487, + |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:134107312..134107315,+#_20a8e25dd036699ac7e17ab087a84a3f | p46@TG |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:133900431..133900436,+#_20a8e25dd036699ac7e17ab087a84a3f | p@chr8:133900431..133900436, + |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:133980132..133980143,+#_20a8e25dd036699ac7e17ab087a84a3f | p@chr8:133980132..133980143, + |
| 3.49e-79 | FFCP PHASE1:Hg19::chr7:107301406..107301418,+#_20a8e25dd036699ac7e17ab087a84a3f | p5@SLC26A4 |
| 3.49e-79 | FFCP PHASE1:Hg19::chr21:39644214..39644219,+#_20a8e25dd036699ac7e17ab087a84a3f | p21@KCNJ15 |
| 3.49e-79 | FFCP PHASE2:Hg19::chr14:21560489..21560506,-#_20a8e25dd036699ac7e17ab087a84a3f | p@chr14:21560489..21560506, - |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:133885307..133885312,+#_20a8e25dd036699ac7e17ab087a84a3f | p@chr8:133885307..133885312, + |
| 3.49e-79 | FFCP PHASE2:Hg19::chr2:1417430..1417444,+#_20a8e25dd036699ac7e17ab087a84a3f | p@chr2:1417430..1417444, + |
| 3.49e-79 | FFCP PHASE2:Hg19::chr14:67998625..67998628,-#_20a8e25dd036699ac7e17ab087a84a3f | p@chr14:67998625..67998628, - |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:133899413..133899418,+#_20a8e25dd036699ac7e17ab087a84a3f | p@chr8:133899413..133899418, + |
| 3.49e-79 | FFCP PHASE1:Hg19::chr4:88047429..88047437,+#_20a8e25dd036699ac7e17ab087a84a3f | p@chr4:88047429..88047437, + |
| 3.49e-79 | FFCP PHASE2:Hg19::chr16:66420861..66420868,+#_20a8e25dd036699ac7e17ab087a84a3f | p@chr16:66420861..66420868, + |
| 3.49e-79 | FFCP PHASE1:Hg19::chr2:1457477..1457487,+#_20a8e25dd036699ac7e17ab087a84a3f | p@chr2:1457477..1457487, + |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:133900431..133900436,+#_20a8e25dd036699ac7e17ab087a84a3f | p@chr8:133900431..133900436, + |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:133895057..133895065,+#_20a8e25dd036699ac7e17ab087a84a3f | p@chr8:133895057..133895065, + |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:133894780..133894789,+#_20a8e25dd036699ac7e17ab087a84a3f | p@chr8:133894780..133894789, + |
| 3.49e-79 | FFCP PHASE2:Hg19::chr15:64421903..64421920,+#_20a8e25dd036699ac7e17ab087a84a3f | p@chr15:64421903..64421920, + |
| 3.49e-79 | FFCP PHASE1:Hg19::chr14:81421428..81421431,+#_20a8e25dd036699ac7e17ab087a84a3f | p11@TSHR |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:133980132..133980143,+#_20a8e25dd036699ac7e17ab087a84a3f | p@chr8:133980132..133980143, + |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:133882027..133882038,+#_20a8e25dd036699ac7e17ab087a84a3f | p@chr8:133882027..133882038, + |
| 3.49e-79 | FFCP PHASE2:Hg19::chr21:39644214..39644219,+#_20a8e25dd036699ac7e17ab087a84a3f | p21@KCNJ15 |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:133961114..133961122,+#_20a8e25dd036699ac7e17ab087a84a3f | p@chr8:133961114..133961122, + |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:133981730..133981736,+#_20a8e25dd036699ac7e17ab087a84a3f | p38@TG |
| 3.49e-79 | FFCP PHASE1:Hg19::chr2:1417430..1417444,+#_20a8e25dd036699ac7e17ab087a84a3f | p@chr2:1417430..1417444, + |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:134107327..134107332,+#_20a8e25dd036699ac7e17ab087a84a3f | p29@TG |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:133899413..133899418,+#_20a8e25dd036699ac7e17ab087a84a3f | p@chr8:133899413..133899418, + |
| 3.49e-79 | FFCP PHASE2:Hg19::chr4:88047429..88047437,+#_20a8e25dd036699ac7e17ab087a84a3f | p@chr4:88047429..88047437, + |
| 3.49e-79 | FFCP PHASE1:Hg19::chr16:66420861..66420868,+#_20a8e25dd036699ac7e17ab087a84a3f | p@chr16:66420861..66420868, + |
| 3.49e-79 | FFCP PHASE2:Hg19::chr2:134788853..134788858,-#_20a8e25dd036699ac7e17ab087a84a3f | p@chr2:134788853..134788858, - |
| 3.49e-79 | FFCP PHASE2:Hg19::chr1:36771641..36771644,+#_20a8e25dd036699ac7e17ab087a84a3f | p11@SH3D21 |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:133953595..133953600,+#_20a8e25dd036699ac7e17ab087a84a3f | p@chr8:133953595..133953600, + |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:133899244..133899254,-#_20a8e25dd036699ac7e17ab087a84a3f | p@chr8:133899244..133899254, - |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:133882027..133882038,+#_20a8e25dd036699ac7e17ab087a84a3f | p@chr8:133882027..133882038, + |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:133981730..133981736,+#_20a8e25dd036699ac7e17ab087a84a3f | p38@TG |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:133894780..133894789,+#_20a8e25dd036699ac7e17ab087a84a3f | p@chr8:133894780..133894789, + |
| 3.49e-79 | FFCP PHASE2:Hg19::chr2:1457500..1457511,+#_20a8e25dd036699ac7e17ab087a84a3f | p@chr2:1457500..1457511, + |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:134107327..134107332,+#_20a8e25dd036699ac7e17ab087a84a3f | p29@TG |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:133961114..133961122,+#_20a8e25dd036699ac7e17ab087a84a3f | p@chr8:133961114..133961122, + |
| 3.49e-79 | FFCP PHASE1:Hg19::chr2:134788853..134788858,-#_20a8e25dd036699ac7e17ab087a84a3f | p@chr2:134788853..134788858, - |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:133899244..133899254,-#_20a8e25dd036699ac7e17ab087a84a3f | p@chr8:133899244..133899254, - |
| 3.49e-79 | FFCP PHASE1:Hg19::chr1:36771641..36771644,+#_20a8e25dd036699ac7e17ab087a84a3f | p11@SH3D21 |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:133953595..133953600,+#_20a8e25dd036699ac7e17ab087a84a3f | p@chr8:133953595..133953600, + |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:133895164..133895167,+#_20a8e25dd036699ac7e17ab087a84a3f | p@chr8:133895164..133895167, + |
| 3.49e-79 | FFCP PHASE1:Hg19::chr2:1457500..1457511,+#_20a8e25dd036699ac7e17ab087a84a3f | p@chr2:1457500..1457511, + |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:134145709..134145716,+#_20a8e25dd036699ac7e17ab087a84a3f | p18@TG |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:133898957..133898963,-#_20a8e25dd036699ac7e17ab087a84a3f | p@chr8:133898957..133898963, - |
| 3.49e-79 | FFCP PHASE2:Hg19::chr6:43837226..43837237,-#_20a8e25dd036699ac7e17ab087a84a3f | p@chr6:43837226..43837237, - |
| 3.49e-79 | FFCP PHASE2:Hg19::chr18:24321747..24321752,-#_20a8e25dd036699ac7e17ab087a84a3f | p@chr18:24321747..24321752, - |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:133900307..133900325,-#_20a8e25dd036699ac7e17ab087a84a3f | p@chr8:133900307..133900325, - |
| 3.49e-79 | FFCP PHASE2:Hg19::chr2:1426812..1426834,+#_20a8e25dd036699ac7e17ab087a84a3f | p5@TPO |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:133898734..133898737,+#_20a8e25dd036699ac7e17ab087a84a3f | p@chr8:133898734..133898737, + |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:133898957..133898963,-#_20a8e25dd036699ac7e17ab087a84a3f | p@chr8:133898957..133898963, - |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:134145709..134145716,+#_20a8e25dd036699ac7e17ab087a84a3f | p18@TG |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:133895164..133895167,+#_20a8e25dd036699ac7e17ab087a84a3f | p@chr8:133895164..133895167, + |
| 3.49e-79 | FFCP PHASE2:Hg19::chr8:133900307..133900325,-#_20a8e25dd036699ac7e17ab087a84a3f | p@chr8:133900307..133900325, - |
| 3.49e-79 | FFCP PHASE2:Hg19::chr2:1459933..1459941,+#_20a8e25dd036699ac7e17ab087a84a3f | p@chr2:1459933..1459941, + |
| 3.49e-79 | FFCP PHASE2:Hg19::chr14:81421428..81421431,+#_20a8e25dd036699ac7e17ab087a84a3f | p11@TSHR |
| 3.49e-79 | FFCP PHASE1:Hg19::chr2:1426812..1426834,+#_20a8e25dd036699ac7e17ab087a84a3f | p5@TPO |
| 3.49e-79 | FFCP PHASE2:Hg19::chr2:1440068..1440076,+#_20a8e25dd036699ac7e17ab087a84a3f | p@chr2:1440068..1440076, + |
| 3.49e-79 | FFCP PHASE1:Hg19::chr6:43837226..43837237,-#_20a8e25dd036699ac7e17ab087a84a3f | p@chr6:43837226..43837237, - |
| 3.49e-79 | FFCP PHASE1:Hg19::chr18:24321747..24321752,-#_20a8e25dd036699ac7e17ab087a84a3f | p@chr18:24321747..24321752, - |
| 3.49e-79 | FFCP PHASE1:Hg19::chr8:133981694..133981700,+#_20a8e25dd036699ac7e17ab087a84a3f | p35@TG |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Second of the pharyngeal (endodermal) evaginations between the visceral arches from which the Eustachian tube is derived; pouches 2-4 open as gill slits.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
