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|namespace=
|namespace=
|def="A duct or series of ducts that transports sperm from the gonad. In mammals this is from the seminiferous tubules through rete testis, vas efferentia, epididymis, vas deferens, ejeculatory duct to the urethra." [UBERON:cjm]
|def="A duct or series of ducts that transports sperm from the gonad. In mammals this is from the seminiferous tubules through rete testis, vas efferentia, epididymis, vas deferens, ejeculatory duct to the urethra." [UBERON:cjm]
|xref=FMA:55678;;ZFA:0001268
|xref=FMA:55678;;TAO:0001268;;ZFA:0001268
|is_a=UBERON:0000058;;UBERON:0005904
|is_a=UBERON:0005904
|synonym="sperm duct" EXACT [ZFA:0001268]
|synonym="sperm duct" EXACT [ZFA:0001268]
|comment=Taxon notes: we use this as a generic grouping class for a number of taxa. AO notes: in FMA includes as parts: seminal vesicle, efferent ductule (vas efferentia), epididymis, deferent duct (vas deferens), ejaculatory duct
|comment=Taxon notes: we use this as a generic grouping class for a number of taxa. AO notes: in FMA includes as parts: seminal vesicle, efferent ductule (vas efferentia), epididymis, deferent duct (vas deferens), ejaculatory duct
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|obo_creation_date=
|obo_creation_date=
|subset=grouping_class
|subset=grouping_class
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|has_quality=
|has_quality=
|located_in=
|located_in=
|part_of=UBERON:0004054
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|is_obsolete=
|preceded_by=
|preceded_by=
}}
}}

Revision as of 17:07, 26 June 2012

Name:male genital duct
Definition:"A duct or series of ducts that transports sperm from the gonad. In mammals this is from the seminiferous tubules through rete testis, vas efferentia, epididymis, vas deferens, ejeculatory duct to the urethra." [UBERON:cjm]
Xrefs:
links:

FMA:55678
TAO:0001268

ZFA:0001268
Synonyms: "sperm duct" EXACT [ZFA:0001268]
Comments:Taxon notes: we use this as a generic grouping class for a number of taxa. AO notes: in FMA includes as parts: seminal vesicle, efferent ductule (vas efferentia), epididymis, deferent duct (vas deferens), ejaculatory duct
Alt_id: UBERON:0010140
Subset: grouping_class

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0005904(duct of male reproductive system)



Children

part of:UBERON:0001000 (vas deferens),UBERON:0001301 (epididymis),UBERON:0006868 (seminal fluid secreting gland)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0006947 (male genital duct), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.79e-195FFCP PHASE2:Hg19::chr11:125618661..125618677,+#_adb36d4669ab3729bbe71f3a485c7abbp@chr11:125618661..125618677, +
2.79e-195FFCP PHASE1:Hg19::chr11:125618661..125618677,+#_adb36d4669ab3729bbe71f3a485c7abbp@chr11:125618661..125618677, +
2.79e-195FFCP PHASE1:Hg19::chr11:69950851..69950887,+#_adb36d4669ab3729bbe71f3a485c7abbp@chr11:69950851..69950887, +
2.79e-195FFCP PHASE2:Hg19::chr14:105935020..105935028,-#_adb36d4669ab3729bbe71f3a485c7abbp@chr14:105935020..105935028, -
2.79e-195FFCP PHASE2:Hg19::chr15:25165150..25165161,+#_adb36d4669ab3729bbe71f3a485c7abbp@chr15:25165150..25165161, +
2.79e-195FFCP PHASE1:Hg19::chr14:21214091..21214097,+#_adb36d4669ab3729bbe71f3a485c7abbp3@EDDM3A
2.79e-195FFCP PHASE2:Hg19::chr14:21213984..21213993,+#_adb36d4669ab3729bbe71f3a485c7abbp2@EDDM3A
2.79e-195FFCP PHASE1:Hg19::chr9:138555154..138555159,+#_adb36d4669ab3729bbe71f3a485c7abbp1@LCN9
2.79e-195FFCP PHASE1:Hg19::chr3:140961228..140961237,+#_adb36d4669ab3729bbe71f3a485c7abbp@chr3:140961228..140961237, +
2.79e-195FFCP PHASE1:Hg19::chrX:112044378..112044412,-#_adb36d4669ab3729bbe71f3a485c7abbp@chrX:112044378..112044412, -
2.79e-195FFCP PHASE2:Hg19::chr11:125618739..125618756,-#_adb36d4669ab3729bbe71f3a485c7abbp@chr11:125618739..125618756, -
2.79e-195FFCP PHASE1:Hg19::chr11:125618739..125618756,-#_adb36d4669ab3729bbe71f3a485c7abbp@chr11:125618739..125618756, -
2.79e-195FFCP PHASE2:Hg19::chr11:125617607..125617617,+#_adb36d4669ab3729bbe71f3a485c7abbp@chr11:125617607..125617617, +
2.79e-195FFCP PHASE2:Hg19::chr11:69950851..69950887,+#_adb36d4669ab3729bbe71f3a485c7abbp@chr11:69950851..69950887, +
2.79e-195FFCP PHASE1:Hg19::chr11:125617607..125617617,+#_adb36d4669ab3729bbe71f3a485c7abbp@chr11:125617607..125617617, +
2.79e-195FFCP PHASE2:Hg19::chr9:138555154..138555159,+#_adb36d4669ab3729bbe71f3a485c7abbp1@LCN9
2.79e-195FFCP PHASE2:Hg19::chr11:125648641..125648646,-#_adb36d4669ab3729bbe71f3a485c7abbp2@PATE2
2.79e-195FFCP PHASE1:Hg19::chr11:125648641..125648646,-#_adb36d4669ab3729bbe71f3a485c7abbp2@PATE2
2.79e-195FFCP PHASE1:Hg19::chr11:69951723..69951737,+#_adb36d4669ab3729bbe71f3a485c7abbp@chr11:69951723..69951737, +
2.79e-195FFCP PHASE2:Hg19::chr11:125617636..125617646,+#_adb36d4669ab3729bbe71f3a485c7abbp@chr11:125617636..125617646, +
2.79e-195FFCP PHASE1:Hg19::chr11:125617636..125617646,+#_adb36d4669ab3729bbe71f3a485c7abbp@chr11:125617636..125617646, +
2.79e-195FFCP PHASE2:Hg19::chr14:21214091..21214097,+#_adb36d4669ab3729bbe71f3a485c7abbp3@EDDM3A
2.79e-195FFCP PHASE1:Hg19::chr14:105935020..105935028,-#_adb36d4669ab3729bbe71f3a485c7abbp@chr14:105935020..105935028, -
2.79e-195FFCP PHASE2:Hg19::chr11:125648685..125648688,-#_adb36d4669ab3729bbe71f3a485c7abbp3@PATE2
2.79e-195FFCP PHASE1:Hg19::chr11:125648685..125648688,-#_adb36d4669ab3729bbe71f3a485c7abbp3@PATE2
2.79e-195FFCP PHASE2:Hg19::chr11:125616184..125616201,+#_adb36d4669ab3729bbe71f3a485c7abbp2@PATE1
2.79e-195FFCP PHASE1:Hg19::chr11:125616184..125616201,+#_adb36d4669ab3729bbe71f3a485c7abbp2@PATE1
2.79e-195FFCP PHASE1:Hg19::chr14:21213984..21213993,+#_adb36d4669ab3729bbe71f3a485c7abbp2@EDDM3A
2.79e-195FFCP PHASE2:Hg19::chr11:125618495..125618517,+#_adb36d4669ab3729bbe71f3a485c7abbp@chr11:125618495..125618517, +
2.79e-195FFCP PHASE2:Hg19::chr11:69951723..69951737,+#_adb36d4669ab3729bbe71f3a485c7abbp@chr11:69951723..69951737, +
2.79e-195FFCP PHASE1:Hg19::chr11:125618495..125618517,+#_adb36d4669ab3729bbe71f3a485c7abbp@chr11:125618495..125618517, +
2.79e-195FFCP PHASE2:Hg19::chr3:140961228..140961237,+#_adb36d4669ab3729bbe71f3a485c7abbp@chr3:140961228..140961237, +
2.79e-195FFCP PHASE2:Hg19::chrX:112044378..112044412,-#_adb36d4669ab3729bbe71f3a485c7abbp@chrX:112044378..112044412, -
2.79e-195FFCP PHASE1:Hg19::chr15:25165150..25165161,+#_adb36d4669ab3729bbe71f3a485c7abbp@chr15:25165150..25165161, +
3.27e-147FFCP PHASE2:Hg19::chr7:25702669..25702678,-#_a8f659f2ac68083c30d3dc01096eb48fp4@ENST00000446840, p4@uc003sxp.1
3.27e-147FFCP PHASE1:Hg19::chr14:21214039..21214057,+#_a8f659f2ac68083c30d3dc01096eb48fp1@EDDM3A
3.27e-147FFCP PHASE2:Hg19::chr16:2126158..2126172,+#_a8f659f2ac68083c30d3dc01096eb48fp9@TSC2
3.27e-147FFCP PHASE1:Hg19::chr10:114094924..114094935,-#_a8f659f2ac68083c30d3dc01096eb48fp@chr10:114094924..114094935, -
3.27e-147FFCP PHASE2:Hg19::chr10:114094924..114094935,-#_a8f659f2ac68083c30d3dc01096eb48fp@chr10:114094924..114094935, -
3.27e-147FFCP PHASE1:Hg19::chr11:69951071..69951079,+#_a8f659f2ac68083c30d3dc01096eb48fp@chr11:69951071..69951079, +
3.27e-147FFCP PHASE2:Hg19::chr14:21214039..21214057,+#_a8f659f2ac68083c30d3dc01096eb48fp1@EDDM3A
3.27e-147FFCP PHASE1:Hg19::chr10:119307515..119307518,+#_a8f659f2ac68083c30d3dc01096eb48fp23@EMX2
3.27e-147FFCP PHASE1:Hg19::chr16:2126158..2126172,+#_a8f659f2ac68083c30d3dc01096eb48fp9@TSC2
3.27e-147FFCP PHASE2:Hg19::chr11:69951071..69951079,+#_a8f659f2ac68083c30d3dc01096eb48fp@chr11:69951071..69951079, +
3.27e-147FFCP PHASE1:Hg19::chr11:92922903..92922918,+#_a8f659f2ac68083c30d3dc01096eb48fp@chr11:92922903..92922918, +
3.27e-147FFCP PHASE2:Hg19::chr10:119307515..119307518,+#_a8f659f2ac68083c30d3dc01096eb48fp23@EMX2
3.27e-147FFCP PHASE1:Hg19::chr7:25702669..25702678,-#_a8f659f2ac68083c30d3dc01096eb48fp4@ENST00000446840, p4@uc003sxp.1
3.27e-147FFCP PHASE2:Hg19::chr11:92922903..92922918,+#_a8f659f2ac68083c30d3dc01096eb48fp@chr11:92922903..92922918, +
5.41e-147FFCP PHASE1:Hg19::chr15:64423864..64423884,+#_edbe3ef02773caa7a4679e3795099f3fp8@SNX1
5.41e-147FFCP PHASE2:Hg19::chr11:69950033..69950046,+#_edbe3ef02773caa7a4679e3795099f3fp11@ANO1
5.41e-147FFCP PHASE1:Hg19::chr17:59475447..59475455,+#_edbe3ef02773caa7a4679e3795099f3fp@chr17:59475447..59475455, +
5.41e-147FFCP PHASE2:Hg19::chr15:64423864..64423884,+#_edbe3ef02773caa7a4679e3795099f3fp8@SNX1
5.41e-147FFCP PHASE2:Hg19::chr17:59475447..59475455,+#_edbe3ef02773caa7a4679e3795099f3fp@chr17:59475447..59475455, +
5.41e-147FFCP PHASE2:Hg19::chr11:125706033..125706038,+#_edbe3ef02773caa7a4679e3795099f3fp@chr11:125706033..125706038, +
5.41e-147FFCP PHASE1:Hg19::chr11:125706033..125706038,+#_edbe3ef02773caa7a4679e3795099f3fp@chr11:125706033..125706038, +
5.41e-147FFCP PHASE1:Hg19::chr11:69950033..69950046,+#_edbe3ef02773caa7a4679e3795099f3fp11@ANO1
8.93e-147FFCP PHASE1:Hg19::chr2:87985242..87985251,-#_5f425a27b68e2f71bef962ac178da169p@chr2:87985242..87985251, -
8.93e-147FFCP PHASE1:Hg19::chr10:102505147..102505162,+#_5f425a27b68e2f71bef962ac178da169p9@PAX2
8.93e-147FFCP PHASE2:Hg19::chr10:102505147..102505162,+#_5f425a27b68e2f71bef962ac178da169p9@PAX2
8.93e-147FFCP PHASE2:Hg19::chr2:87985242..87985251,-#_5f425a27b68e2f71bef962ac178da169p@chr2:87985242..87985251, -
1.47e-146FFCP PHASE2:Hg19::chr3:107201385..107201388,-#_dac6ac1d8758c7a85c89858384e45f8dp@chr3:107201385..107201388, -
1.47e-146FFCP PHASE1:Hg19::chr3:107201385..107201388,-#_dac6ac1d8758c7a85c89858384e45f8dp@chr3:107201385..107201388, -
8.98e-131FFCP PHASE2:Hg19::chr20:43851747..43851752,+#_63fbf71a93de793951981a83aabd5ccdp@chr20:43851747..43851752, +
8.98e-131FFCP PHASE1:Hg19::chr20:43853005..43853012,+#_63fbf71a93de793951981a83aabd5ccdp@chr20:43853005..43853012, +
8.98e-131FFCP PHASE1:Hg19::chr20:43837283..43837290,+#_63fbf71a93de793951981a83aabd5ccdp@chr20:43837283..43837290, +
8.98e-131FFCP PHASE1:Hg19::chr6:50017636..50017649,-#_63fbf71a93de793951981a83aabd5ccdp@chr6:50017636..50017649, -
8.98e-131FFCP PHASE2:Hg19::chr20:43838313..43838327,+#_63fbf71a93de793951981a83aabd5ccdp@chr20:43838313..43838327, +
8.98e-131FFCP PHASE1:Hg19::chr1:26217127..26217131,+#_63fbf71a93de793951981a83aabd5ccdp@chr1:26217127..26217131, +
8.98e-131FFCP PHASE1:Hg19::chr15:91849967..91849970,+#_63fbf71a93de793951981a83aabd5ccdp@chr15:91849967..91849970, +
8.98e-131FFCP PHASE2:Hg19::chr20:43850628..43850633,+#_63fbf71a93de793951981a83aabd5ccdp@chr20:43850628..43850633, +
8.98e-131FFCP PHASE1:Hg19::chr20:43850995..43851023,+#_63fbf71a93de793951981a83aabd5ccdp@chr20:43850995..43851023, +
8.98e-131FFCP PHASE2:Hg19::chr13:103347376..103347414,-#_63fbf71a93de793951981a83aabd5ccdp@chr13:103347376..103347414, -
8.98e-131FFCP PHASE1:Hg19::chr21:47337358..47337375,+#_63fbf71a93de793951981a83aabd5ccdp@chr21:47337358..47337375, +
8.98e-131FFCP PHASE2:Hg19::chr15:91849918..91849931,+#_63fbf71a93de793951981a83aabd5ccdp@chr15:91849918..91849931, +
8.98e-131FFCP PHASE2:Hg19::chr15:25165137..25165145,+#_63fbf71a93de793951981a83aabd5ccdp@chr15:25165137..25165145, +
8.98e-131FFCP PHASE1:Hg19::chrX:152622610..152622615,+#_63fbf71a93de793951981a83aabd5ccdp@chrX:152622610..152622615, +
8.98e-131FFCP PHASE1:Hg19::chr20:43836912..43836919,-#_63fbf71a93de793951981a83aabd5ccdp@chr20:43836912..43836919, -
8.98e-131FFCP PHASE2:Hg19::chr20:43837223..43837282,+#_63fbf71a93de793951981a83aabd5ccdp@chr20:43837223..43837282, +
8.98e-131FFCP PHASE1:Hg19::chr19:15733036..15733039,+#_63fbf71a93de793951981a83aabd5ccdp@chr19:15733036..15733039, +
8.98e-131FFCP PHASE1:Hg19::chr20:43850664..43850675,+#_63fbf71a93de793951981a83aabd5ccdp@chr20:43850664..43850675, +
8.98e-131FFCP PHASE2:Hg19::chr14:21059530..21059539,-#_63fbf71a93de793951981a83aabd5ccdp@chr14:21059530..21059539, -
8.98e-131FFCP PHASE2:Hg19::chr11:34816713..34816719,-#_63fbf71a93de793951981a83aabd5ccdp@chr11:34816713..34816719, -
8.98e-131FFCP PHASE1:Hg19::chr20:123140..123152,+#_63fbf71a93de793951981a83aabd5ccdp3@DEFB126
8.98e-131FFCP PHASE2:Hg19::chr19:15733036..15733039,+#_63fbf71a93de793951981a83aabd5ccdp@chr19:15733036..15733039, +
8.98e-131FFCP PHASE2:Hg19::chr20:43851422..43851430,+#_63fbf71a93de793951981a83aabd5ccdp@chr20:43851422..43851430, +
8.98e-131FFCP PHASE2:Hg19::chr20:43836225..43836234,-#_63fbf71a93de793951981a83aabd5ccdp@chr20:43836225..43836234, -
8.98e-131FFCP PHASE2:Hg19::chr1:172416185..172416189,-#_63fbf71a93de793951981a83aabd5ccdp@chr1:172416185..172416189, -
8.98e-131FFCP PHASE1:Hg19::chr20:43851878..43851883,+#_63fbf71a93de793951981a83aabd5ccdp@chr20:43851878..43851883, +
8.98e-131FFCP PHASE1:Hg19::chr11:34816713..34816719,-#_63fbf71a93de793951981a83aabd5ccdp@chr11:34816713..34816719, -
8.98e-131FFCP PHASE2:Hg19::chr20:43853046..43853053,+#_63fbf71a93de793951981a83aabd5ccdp@chr20:43853046..43853053, +
8.98e-131FFCP PHASE2:Hg19::chr20:43836771..43836789,-#_63fbf71a93de793951981a83aabd5ccdp@chr20:43836771..43836789, -
8.98e-131FFCP PHASE1:Hg19::chr19:15729741..15729749,+#_63fbf71a93de793951981a83aabd5ccdp@chr19:15729741..15729749, +
8.98e-131FFCP PHASE1:Hg19::chr20:43850436..43850444,-#_63fbf71a93de793951981a83aabd5ccdp@chr20:43850436..43850444, -
8.98e-131FFCP PHASE2:Hg19::chr19:15729741..15729749,+#_63fbf71a93de793951981a83aabd5ccdp@chr19:15729741..15729749, +
8.98e-131FFCP PHASE2:Hg19::chr11:1030990..1030995,-#_63fbf71a93de793951981a83aabd5ccdp@chr11:1030990..1030995, -
8.98e-131FFCP PHASE2:Hg19::chr20:43851095..43851098,+#_63fbf71a93de793951981a83aabd5ccdp@chr20:43851095..43851098, +
8.98e-131FFCP PHASE2:Hg19::chr20:43836085..43836090,+#_63fbf71a93de793951981a83aabd5ccdp@chr20:43836085..43836090, +
8.98e-131FFCP PHASE1:Hg19::chr20:43851492..43851518,+#_63fbf71a93de793951981a83aabd5ccdp@chr20:43851492..43851518, +
8.98e-131FFCP PHASE2:Hg19::chr7:20655284..20655295,+#_63fbf71a93de793951981a83aabd5ccdp5@ABCB5
8.98e-131FFCP PHASE2:Hg19::chr20:43851935..43851976,+#_63fbf71a93de793951981a83aabd5ccdp@chr20:43851935..43851976, +

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