Personal tools

UBERON:0005913: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 14: Line 14:
|obo_creation_date=
|obo_creation_date=
|subset=
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|has_quality=
|has_quality=
|located_in=
|located_in=
|part_of=UBERON:0001474
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|is_obsolete=
|preceded_by=
|preceded_by=
}}
}}

Revision as of 17:07, 26 June 2012

Name:zone of bone organ
Xrefs:
links:
FMA:10483
Synonyms: "bone organ zone" EXACT [FMA:10483]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000064(organ part),UBERON:0004765(skeletal element)



Children

is a:UBERON:0001694 (petrous part of temporal bone)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Mouse (Mus musculus)

  • 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
  • 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
  • 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
  • 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005913 (zone of bone organ), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.87e-86FFCP PHASE1:Mm9::chr7:109265277..109265288,-#_7b6f029a0160898c16bcaba809565328p4@Chrna10
1.87e-86FFCP PHASE2:Mm9::chr7:88068153..88068160,-#_7b6f029a0160898c16bcaba809565328p10@Sec11a
1.87e-86FFCP PHASE1:Mm9::chr5:3909290..3909299,+#_7b6f029a0160898c16bcaba809565328p@chr5:3909290..3909299, +
1.87e-86FFCP PHASE1:Mm9::chr4:115556939..115556945,+#_7b6f029a0160898c16bcaba809565328p4@Kncn
1.87e-86FFCP PHASE1:Mm9::chr10:67371994..67372010,+#_7b6f029a0160898c16bcaba809565328p@chr10:67371994..67372010, +
1.87e-86FFCP PHASE2:Mm9::chr1:194818647..194818660,-#_7b6f029a0160898c16bcaba809565328p@chr1:194818647..194818660, -
1.87e-86FFCP PHASE2:Mm9::chr5:68423014..68423037,+#_7b6f029a0160898c16bcaba809565328p1@Grxcr1
1.87e-86FFCP PHASE1:Mm9::chr9:42207697..42207705,-#_7b6f029a0160898c16bcaba809565328p@chr9:42207697..42207705, -
1.87e-86FFCP PHASE1:Mm9::chr7:27964761..27964768,+#_7b6f029a0160898c16bcaba809565328p@chr7:27964761..27964768, +
1.87e-86FFCP PHASE2:Mm9::chr9:50968647..50968668,-#_7b6f029a0160898c16bcaba809565328p@chr9:50968647..50968668, -
1.87e-86FFCP PHASE1:Mm9::chr3:154693281..154693317,-#_7b6f029a0160898c16bcaba809565328p@chr3:154693281..154693317, -
1.87e-86FFCP PHASE2:Mm9::chr5:3909290..3909299,+#_7b6f029a0160898c16bcaba809565328p@chr5:3909290..3909299, +
1.87e-86FFCP PHASE1:Mm9::chr5:150945209..150945220,+#_7b6f029a0160898c16bcaba809565328p@chr5:150945209..150945220, +
1.87e-86FFCP PHASE1:Mm9::chr9:41495920..41495928,-#_7b6f029a0160898c16bcaba809565328p@chr9:41495920..41495928, -
1.87e-86FFCP PHASE1:Mm9::chr2:53464178..53464186,+#_7b6f029a0160898c16bcaba809565328p@chr2:53464178..53464186, +
1.87e-86FFCP PHASE2:Mm9::chr10:80806047..80806059,-#_7b6f029a0160898c16bcaba809565328p4@Gipc3
1.87e-86FFCP PHASE1:Mm9::chr4:151505798..151505818,-#_7b6f029a0160898c16bcaba809565328p21@Espn
1.87e-86FFCP PHASE2:Mm9::chr9:92087926..92087938,+#_7b6f029a0160898c16bcaba809565328p2@Plscr5
1.87e-86FFCP PHASE2:Mm9::chr3:58626291..58626298,-#_7b6f029a0160898c16bcaba809565328p@chr3:58626291..58626298, -
1.87e-86FFCP PHASE1:Mm9::chr9:56208792..56208814,-#_7b6f029a0160898c16bcaba809565328p@chr9:56208792..56208814, -
1.87e-86FFCP PHASE1:Mm9::chr15:58480061..58480066,+#_7b6f029a0160898c16bcaba809565328p5@Fer1l6
1.87e-86FFCP PHASE2:Mm9::chr1:172843813..172843834,-#_7b6f029a0160898c16bcaba809565328p@chr1:172843813..172843834, -
1.87e-86FFCP PHASE1:Mm9::chr1:182528371..182528385,+#_7b6f029a0160898c16bcaba809565328p@chr1:182528371..182528385, +
1.87e-86FFCP PHASE1:Mm9::chr14:31283085..31283097,-#_7b6f029a0160898c16bcaba809565328p@chr14:31283085..31283097, -
1.87e-86FFCP PHASE2:Mm9::chr4:130461150..130461185,+#_7b6f029a0160898c16bcaba809565328p@chr4:130461150..130461185, +
1.87e-86FFCP PHASE1:Mm9::chr6:113251614..113251623,+#_7b6f029a0160898c16bcaba809565328p@chr6:113251614..113251623, +
1.87e-86FFCP PHASE1:Mm9::chr19:10536767..10536777,-#_7b6f029a0160898c16bcaba809565328p@chr19:10536767..10536777, -
1.87e-86FFCP PHASE1:Mm9::chr17:13983102..13983126,+#_7b6f029a0160898c16bcaba809565328p@chr17:13983102..13983126, +
1.87e-86FFCP PHASE2:Mm9::chr3:100724698..100724706,+#_7b6f029a0160898c16bcaba809565328p@chr3:100724698..100724706, +
1.87e-86FFCP PHASE2:Mm9::chr6:30619378..30619412,-#_7b6f029a0160898c16bcaba809565328p11@Tsga14
1.87e-86FFCP PHASE1:Mm9::chr15:103146966..103146971,-#_7b6f029a0160898c16bcaba809565328p@chr15:103146966..103146971, -
1.87e-86FFCP PHASE2:Mm9::chr19:10536797..10536802,-#_7b6f029a0160898c16bcaba809565328p@chr19:10536797..10536802, -
1.87e-86FFCP PHASE2:Mm9::chr9:56208792..56208814,-#_7b6f029a0160898c16bcaba809565328p@chr9:56208792..56208814, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207887..42207960,-#_7b6f029a0160898c16bcaba809565328p1@Tecta
1.87e-86FFCP PHASE1:Mm9::chr19:55256373..55256384,+#_7b6f029a0160898c16bcaba809565328p@chr19:55256373..55256384, +
1.87e-86FFCP PHASE1:Mm9::chr13:78322370..78322376,-#_7b6f029a0160898c16bcaba809565328p4@uc007rhb.1
1.87e-86FFCP PHASE1:Mm9::chr3:35012397..35012405,+#_7b6f029a0160898c16bcaba809565328p@chr3:35012397..35012405, +
1.87e-86FFCP PHASE1:Mm9::chr15:89215306..89215315,+#_7b6f029a0160898c16bcaba809565328p@chr15:89215306..89215315, +
1.87e-86FFCP PHASE1:Mm9::chr10:107349430..107349440,-#_7b6f029a0160898c16bcaba809565328p3@Otogl
1.87e-86FFCP PHASE2:Mm9::chr11:102123535..102123544,+#_7b6f029a0160898c16bcaba809565328p5@BC030867
1.87e-86FFCP PHASE1:Mm9::chr12:109905468..109905474,+#_7b6f029a0160898c16bcaba809565328p@chr12:109905468..109905474, +
1.87e-86FFCP PHASE1:Mm9::chr16:93971325..93971337,-#_7b6f029a0160898c16bcaba809565328p@chr16:93971325..93971337, -
1.87e-86FFCP PHASE2:Mm9::chr3:35012425..35012439,+#_7b6f029a0160898c16bcaba809565328p@chr3:35012425..35012439, +
1.87e-86FFCP PHASE2:Mm9::chr4:115556989..115556997,+#_7b6f029a0160898c16bcaba809565328p1@Kncn
1.87e-86FFCP PHASE2:Mm9::chr17:13983160..13983167,+#_7b6f029a0160898c16bcaba809565328p@chr17:13983160..13983167, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207887..42207960,-#_7b6f029a0160898c16bcaba809565328p1@Tecta
1.87e-86FFCP PHASE1:Mm9::chr1:93235253..93235264,+#_7b6f029a0160898c16bcaba809565328p@chr1:93235253..93235264, +
1.87e-86FFCP PHASE2:Mm9::chr9:42206745..42206774,-#_7b6f029a0160898c16bcaba809565328p@chr9:42206745..42206774, -
1.87e-86FFCP PHASE2:Mm9::chr19:55255206..55255223,+#_7b6f029a0160898c16bcaba809565328p1@Tectb
1.87e-86FFCP PHASE2:Mm9::chr3:106986057..106986062,+#_7b6f029a0160898c16bcaba809565328p1@Kcna10
1.87e-86FFCP PHASE2:Mm9::chr13:78257491..78257498,+#_7b6f029a0160898c16bcaba809565328p@chr13:78257491..78257498, +
1.87e-86FFCP PHASE1:Mm9::chr7:109052297..109052300,-#_7b6f029a0160898c16bcaba809565328p2@Tomt
1.87e-86FFCP PHASE1:Mm9::chr11:8405038..8405048,-#_7b6f029a0160898c16bcaba809565328p@chr11:8405038..8405048, -
1.87e-86FFCP PHASE2:Mm9::chr2:128881546..128881553,-#_7b6f029a0160898c16bcaba809565328p@chr2:128881546..128881553, -
1.87e-86FFCP PHASE1:Mm9::chr5:30710403..30710406,-#_7b6f029a0160898c16bcaba809565328p10@Otof
1.87e-86FFCP PHASE2:Mm9::chr4:151505798..151505818,-#_7b6f029a0160898c16bcaba809565328p21@Espn
1.87e-86FFCP PHASE1:Mm9::chr9:42206745..42206774,-#_7b6f029a0160898c16bcaba809565328p@chr9:42206745..42206774, -
1.87e-86FFCP PHASE1:Mm9::chr2:67011921..67011934,+#_7b6f029a0160898c16bcaba809565328p2@Gm1322
1.87e-86FFCP PHASE1:Mm9::chr14:63099970..63099980,-#_7b6f029a0160898c16bcaba809565328p@chr14:63099970..63099980, -
1.87e-86FFCP PHASE2:Mm9::chr1:93218694..93218705,+#_7b6f029a0160898c16bcaba809565328p1@Espnl
1.87e-86FFCP PHASE1:Mm9::chr17:31335869..31335899,-#_7b6f029a0160898c16bcaba809565328p1@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr18:42158627..42158630,-#_7b6f029a0160898c16bcaba809565328p@chr18:42158627..42158630, -
1.87e-86FFCP PHASE1:Mm9::chr9:66860888..66860899,+#_7b6f029a0160898c16bcaba809565328p@chr9:66860888..66860899, +
1.87e-86FFCP PHASE1:Mm9::chrX:154140800..154140810,+#_7b6f029a0160898c16bcaba809565328p@chrX:154140800..154140810, +
1.87e-86FFCP PHASE1:Mm9::chr3:81012915..81012923,+#_7b6f029a0160898c16bcaba809565328p@chr3:81012915..81012923, +
1.87e-86FFCP PHASE2:Mm9::chr2:152453066..152453075,-#_7b6f029a0160898c16bcaba809565328p@chr2:152453066..152453075, -
1.87e-86FFCP PHASE1:Mm9::chr14:47293487..47293493,-#_7b6f029a0160898c16bcaba809565328p@chr14:47293487..47293493, -
1.87e-86FFCP PHASE1:Mm9::chr12:77084875..77084885,+#_7b6f029a0160898c16bcaba809565328p@chr12:77084875..77084885, +
1.87e-86FFCP PHASE2:Mm9::chr12:13508046..13508055,+#_7b6f029a0160898c16bcaba809565328p@chr12:13508046..13508055, +
1.87e-86FFCP PHASE2:Mm9::chr5:150945209..150945220,+#_7b6f029a0160898c16bcaba809565328p@chr5:150945209..150945220, +
1.87e-86FFCP PHASE2:Mm9::chr3:154693281..154693317,-#_7b6f029a0160898c16bcaba809565328p@chr3:154693281..154693317, -
1.87e-86FFCP PHASE2:Mm9::chr9:42208142..42208157,-#_7b6f029a0160898c16bcaba809565328p10@Tecta
1.87e-86FFCP PHASE1:Mm9::chr2:128881546..128881553,-#_7b6f029a0160898c16bcaba809565328p@chr2:128881546..128881553, -
1.87e-86FFCP PHASE1:Mm9::chr3:58626291..58626298,-#_7b6f029a0160898c16bcaba809565328p@chr3:58626291..58626298, -
1.87e-86FFCP PHASE1:Mm9::chr7:133957514..133957529,+#_7b6f029a0160898c16bcaba809565328p@chr7:133957514..133957529, +
1.87e-86FFCP PHASE1:Mm9::chr12:13508046..13508055,+#_7b6f029a0160898c16bcaba809565328p@chr12:13508046..13508055, +
1.87e-86FFCP PHASE2:Mm9::chr4:63079735..63079745,-#_7b6f029a0160898c16bcaba809565328p@chr4:63079735..63079745, -
1.87e-86FFCP PHASE2:Mm9::chr5:147854240..147854249,-#_7b6f029a0160898c16bcaba809565328p@chr5:147854240..147854249, -
1.87e-86FFCP PHASE2:Mm9::chr10:107349430..107349440,-#_7b6f029a0160898c16bcaba809565328p3@Otogl
1.87e-86FFCP PHASE1:Mm9::chr18:81314626..81314636,+#_7b6f029a0160898c16bcaba809565328p@chr18:81314626..81314636, +
1.87e-86FFCP PHASE2:Mm9::chr17:31335903..31335921,-#_7b6f029a0160898c16bcaba809565328p2@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr14:47293496..47293510,-#_7b6f029a0160898c16bcaba809565328p@chr14:47293496..47293510, -
1.87e-86FFCP PHASE1:Mm9::chr9:42208142..42208157,-#_7b6f029a0160898c16bcaba809565328p10@Tecta
1.87e-86FFCP PHASE1:Mm9::chr13:37195838..37195870,-#_7b6f029a0160898c16bcaba809565328p@chr13:37195838..37195870, -
1.87e-86FFCP PHASE2:Mm9::chr6:86746562..86746579,-#_7b6f029a0160898c16bcaba809565328p@chr6:86746562..86746579, -
1.87e-86FFCP PHASE2:Mm9::chr15:58480061..58480066,+#_7b6f029a0160898c16bcaba809565328p5@Fer1l6
1.87e-86FFCP PHASE2:Mm9::chr9:42207777..42207789,-#_7b6f029a0160898c16bcaba809565328p7@Tecta
1.87e-86FFCP PHASE1:Mm9::chr13:76964459..76964469,+#_7b6f029a0160898c16bcaba809565328p15@Mctp1
1.87e-86FFCP PHASE1:Mm9::chr10:107349309..107349318,-#_7b6f029a0160898c16bcaba809565328p4@Otogl
1.87e-86FFCP PHASE2:Mm9::chr11:114603036..114603048,+#_7b6f029a0160898c16bcaba809565328p@chr11:114603036..114603048, +
1.87e-86FFCP PHASE2:Mm9::chr16:93971325..93971337,-#_7b6f029a0160898c16bcaba809565328p@chr16:93971325..93971337, -
1.87e-86FFCP PHASE2:Mm9::chr1:154246932..154246939,+#_7b6f029a0160898c16bcaba809565328p7@Glt25d2
1.87e-86FFCP PHASE1:Mm9::chr5:3909310..3909321,+#_7b6f029a0160898c16bcaba809565328p@chr5:3909310..3909321, +
1.87e-86FFCP PHASE1:Mm9::chr4:115556972..115556979,+#_7b6f029a0160898c16bcaba809565328p3@Kncn
1.87e-86FFCP PHASE1:Mm9::chr16:45693840..45693856,-#_7b6f029a0160898c16bcaba809565328p1@Tmprss7
1.87e-86FFCP PHASE2:Mm9::chr8:13414266..13414279,+#_7b6f029a0160898c16bcaba809565328p@chr8:13414266..13414279, +
1.87e-86FFCP PHASE2:Mm9::chr2:53464168..53464175,+#_7b6f029a0160898c16bcaba809565328p@chr2:53464168..53464175, +
1.87e-86FFCP PHASE2:Mm9::chr5:72652660..72652667,+#_7b6f029a0160898c16bcaba809565328p@chr5:72652660..72652667, +
1.87e-86FFCP PHASE2:Mm9::chr11:89702580..89702593,-#_7b6f029a0160898c16bcaba809565328p@chr11:89702580..89702593, -
1.87e-86FFCP PHASE1:Mm9::chr9:42207777..42207789,-#_7b6f029a0160898c16bcaba809565328p7@Tecta

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0005913&oldid=1836182"