UBERON:0005705: Difference between revisions
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|namespace= | |namespace= | ||
|def= | |def= | ||
|xref= | |xref=EHDAA2:0001501;;EHDAA:6968;;EMAPA:17644;;EMAPA:17936;;VHOG:0001024 | ||
|is_a=UBERON:0003323 | |is_a=UBERON:0003323;;UBERON:0004119;;UBERON:0010258 | ||
|synonym= | |synonym= | ||
|comment= | |comment= | ||
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|obo_creation_date= | |obo_creation_date= | ||
|subset= | |subset= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 17:06, 26 June 2012
| Name: | primary palate mesenchyme | ||
|---|---|---|---|
| Xrefs: |
|
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0003323(mesenchyme of upper jaw),UBERON:0004119(endoderm-derived structure),UBERON:0010258(mesenchyme from rhombencephalic neural crest) |
|---|
Children
| is a: | FF:10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005705 (primary palate mesenchyme), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.42e-195 | FFCP PHASE1:Hg19::chr17:54893192..54893195,-#_3857f512004bd3028ff93959f7d89580 | p14@C17orf67 |
| 5.42e-195 | FFCP PHASE2:Hg19::chr17:54893192..54893195,-#_3857f512004bd3028ff93959f7d89580 | p14@C17orf67 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr17:54893213..54893220,-#_632437989274d52883e0346baf552eef | p12@C17orf67 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr8:57353655..57353662,-#_632437989274d52883e0346baf552eef | p@chr8:57353655..57353662, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr17:54893269..54893278,-#_632437989274d52883e0346baf552eef | p11@C17orf67 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr17:54893269..54893278,-#_632437989274d52883e0346baf552eef | p11@C17orf67 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr17:54893292..54893300,-#_632437989274d52883e0346baf552eef | p13@C17orf67 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr17:54893292..54893300,-#_632437989274d52883e0346baf552eef | p13@C17orf67 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr8:57353655..57353662,-#_632437989274d52883e0346baf552eef | p@chr8:57353655..57353662, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr17:54893213..54893220,-#_632437989274d52883e0346baf552eef | p12@C17orf67 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr5:75912402..75912418,-#_f391a1ac31e4296c01aeadbd3d979a7b | p@chr5:75912402..75912418, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr4:151503647..151503656,+#_f391a1ac31e4296c01aeadbd3d979a7b | p14@MAB21L2 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr4:151503647..151503656,+#_f391a1ac31e4296c01aeadbd3d979a7b | p14@MAB21L2 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr5:75912402..75912418,-#_f391a1ac31e4296c01aeadbd3d979a7b | p@chr5:75912402..75912418, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr4:151505582..151505614,+#_54657a313ba8256cccfb1b7b0b4dc7e9 | p@chr4:151505582..151505614, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr4:151505582..151505614,+#_54657a313ba8256cccfb1b7b0b4dc7e9 | p@chr4:151505582..151505614, + |
| 1.46e-50 | FFCP PHASE1:Hg19::chr3:157823323..157823328,+#_45dd3b087499b50270409639485d6589 | p17@RSRC1 |
| 1.46e-50 | FFCP PHASE1:Hg19::chr8:57354278..57354286,+#_45dd3b087499b50270409639485d6589 | p@chr8:57354278..57354286, + |
| 1.46e-50 | FFCP PHASE1:Hg19::chr17:54893196..54893207,-#_45dd3b087499b50270409639485d6589 | p9@C17orf67 |
| 1.46e-50 | FFCP PHASE2:Hg19::chr8:57354278..57354286,+#_45dd3b087499b50270409639485d6589 | p@chr8:57354278..57354286, + |
| 1.46e-50 | FFCP PHASE2:Hg19::chr17:54893196..54893207,-#_45dd3b087499b50270409639485d6589 | p9@C17orf67 |
| 1.46e-50 | FFCP PHASE2:Hg19::chr3:157823323..157823328,+#_45dd3b087499b50270409639485d6589 | p17@RSRC1 |
| 2.42e-50 | FFCP PHASE2:Hg19::chr8:57802672..57802682,-#_93788fa43e24e1275fe5003618d9c038 | p@chr8:57802672..57802682, - |
| 2.42e-50 | FFCP PHASE1:Hg19::chr8:57802672..57802682,-#_93788fa43e24e1275fe5003618d9c038 | p@chr8:57802672..57802682, - |
| 3.99e-50 | FFCP PHASE2:Hg19::chr12:85673913..85673919,+#_917166cb036059aa8295ac48377ff352 | p7@ALX1 |
| 3.99e-50 | FFCP PHASE1:Hg19::chr12:85673913..85673919,+#_917166cb036059aa8295ac48377ff352 | p7@ALX1 |
| 3.99e-50 | FFCP PHASE1:Hg19::chr5:75913767..75913778,-#_917166cb036059aa8295ac48377ff352 | p@chr5:75913767..75913778, - |
| 3.99e-50 | FFCP PHASE1:Hg19::chr17:76930661..76930674,+#_917166cb036059aa8295ac48377ff352 | p1@AK123925 |
| 3.99e-50 | FFCP PHASE2:Hg19::chr5:75913767..75913778,-#_917166cb036059aa8295ac48377ff352 | p@chr5:75913767..75913778, - |
| 3.99e-50 | FFCP PHASE2:Hg19::chr17:76930661..76930674,+#_917166cb036059aa8295ac48377ff352 | p1@AK123925 |
| 6.58e-50 | FFCP PHASE1:Hg19::chr2:33519090..33519092,+#_d6007e92b1329c46586d4056565b0db6 | p@chr2:33519090..33519092, + |
| 6.58e-50 | FFCP PHASE2:Hg19::chr13:28961248..28961262,-#_d6007e92b1329c46586d4056565b0db6 | p23@FLT1 |
| 6.58e-50 | FFCP PHASE1:Hg19::chr13:28961248..28961262,-#_d6007e92b1329c46586d4056565b0db6 | p23@FLT1 |
| 6.58e-50 | FFCP PHASE2:Hg19::chr2:33519090..33519092,+#_d6007e92b1329c46586d4056565b0db6 | p@chr2:33519090..33519092, + |
| 6.62e-41 | FFCP PHASE2:Hg19::chr8:57354143..57354152,+#_1ba746361b8f7f0d2fe1b4c128ee6538 | p@chr8:57354143..57354152, + |
| 6.62e-41 | FFCP PHASE2:Hg19::chr8:57353779..57353790,-#_1ba746361b8f7f0d2fe1b4c128ee6538 | p@chr8:57353779..57353790, - |
| 6.62e-41 | FFCP PHASE2:Hg19::chr8:57353666..57353675,-#_1ba746361b8f7f0d2fe1b4c128ee6538 | p@chr8:57353666..57353675, - |
| 6.62e-41 | FFCP PHASE1:Hg19::chr8:57353779..57353790,-#_1ba746361b8f7f0d2fe1b4c128ee6538 | p@chr8:57353779..57353790, - |
| 6.62e-41 | FFCP PHASE1:Hg19::chr8:57354143..57354152,+#_1ba746361b8f7f0d2fe1b4c128ee6538 | p@chr8:57354143..57354152, + |
| 6.62e-41 | FFCP PHASE1:Hg19::chr8:57353666..57353675,-#_1ba746361b8f7f0d2fe1b4c128ee6538 | p@chr8:57353666..57353675, - |
| 1.48e-40 | FFCP PHASE1:Hg19::chr1:75600308..75600316,+#_a0fa28a459d5f22e798d0720fd5e837a | p8@LHX8 |
| 1.48e-40 | FFCP PHASE2:Hg19::chr1:6615391..6615401,+#_a0fa28a459d5f22e798d0720fd5e837a | p2@TAS1R1 |
| 1.48e-40 | FFCP PHASE2:Hg19::chr1:75600308..75600316,+#_a0fa28a459d5f22e798d0720fd5e837a | p8@LHX8 |
| 1.48e-40 | FFCP PHASE1:Hg19::chr20:49253452..49253461,-#_a0fa28a459d5f22e798d0720fd5e837a | p12@FAM65C |
| 1.48e-40 | FFCP PHASE2:Hg19::chr20:49253452..49253461,-#_a0fa28a459d5f22e798d0720fd5e837a | p12@FAM65C |
| 1.48e-40 | FFCP PHASE1:Hg19::chr1:6615391..6615401,+#_a0fa28a459d5f22e798d0720fd5e837a | p2@TAS1R1 |
| 2.21e-40 | FFCP PHASE1:Hg19::chr5:75912831..75912842,-#_835ab41aab0b51a4c7919e136130b383 | p@chr5:75912831..75912842, - |
| 2.21e-40 | FFCP PHASE2:Hg19::chr5:75912831..75912842,-#_835ab41aab0b51a4c7919e136130b383 | p@chr5:75912831..75912842, - |
| 2.21e-40 | FFCP PHASE1:Hg19::chr16:67687543..67687559,-#_835ab41aab0b51a4c7919e136130b383 | p@chr16:67687543..67687559, - |
| 2.21e-40 | FFCP PHASE2:Hg19::chr16:67687543..67687559,-#_835ab41aab0b51a4c7919e136130b383 | p@chr16:67687543..67687559, - |
| 3.3e-40 | FFCP PHASE1:Hg19::chr6:46190219..46190230,-#_fed714f901ee02b9949cad5415378bd9 | p@chr6:46190219..46190230, - |
| 3.3e-40 | FFCP PHASE2:Hg19::chr9:125165007..125165016,+#_fed714f901ee02b9949cad5415378bd9 | p@chr9:125165007..125165016, + |
| 3.3e-40 | FFCP PHASE2:Hg19::chr6:46190219..46190230,-#_fed714f901ee02b9949cad5415378bd9 | p@chr6:46190219..46190230, - |
| 3.3e-40 | FFCP PHASE1:Hg19::chr9:125165007..125165016,+#_fed714f901ee02b9949cad5415378bd9 | p@chr9:125165007..125165016, + |
| 1.84e-34 | FFCP PHASE2:Hg19::chr4:8594472..8594473,+#_1cc50f3828dd345f70abf76b2694070f | p4@CPZ |
| 1.84e-34 | FFCP PHASE1:Hg19::chr8:57359557..57359570,-#_1cc50f3828dd345f70abf76b2694070f | p5@PENK |
| 1.84e-34 | FFCP PHASE2:Hg19::chr10:15760985..15760992,-#_1cc50f3828dd345f70abf76b2694070f | p@chr10:15760985..15760992, - |
| 1.84e-34 | FFCP PHASE2:Hg19::chr8:57359557..57359570,-#_1cc50f3828dd345f70abf76b2694070f | p5@PENK |
| 1.84e-34 | FFCP PHASE1:Hg19::chr10:15760985..15760992,-#_1cc50f3828dd345f70abf76b2694070f | p@chr10:15760985..15760992, - |
| 1.84e-34 | FFCP PHASE1:Hg19::chr4:8594472..8594473,+#_1cc50f3828dd345f70abf76b2694070f | p4@CPZ |
| 2.58e-34 | FFCP PHASE2:Hg19::chr14:61125018..61125037,-#_8b0e3147f6f9cde71f67b2e85f7b031d | p9@SIX1 |
| 2.58e-34 | FFCP PHASE1:Hg19::chr14:61125018..61125037,-#_8b0e3147f6f9cde71f67b2e85f7b031d | p9@SIX1 |
| 5.05e-34 | FFCP PHASE2:Hg19::chr6:134327986..134327991,-#_c32906173d9d6c2bed022fab2943ca3b | p@chr6:134327986..134327991, - |
| 5.05e-34 | FFCP PHASE1:Hg19::chr6:134327986..134327991,-#_c32906173d9d6c2bed022fab2943ca3b | p@chr6:134327986..134327991, - |
| 7.06e-34 | FFCP PHASE1:Hg19::chr8:57353676..57353688,-#_aaa9a531d2afa327639069af7bf18bb9 | p@chr8:57353676..57353688, - |
| 7.06e-34 | FFCP PHASE2:Hg19::chr13:58291223..58291226,+#_aaa9a531d2afa327639069af7bf18bb9 | p@chr13:58291223..58291226, + |
| 7.06e-34 | FFCP PHASE1:Hg19::chr13:58291223..58291226,+#_aaa9a531d2afa327639069af7bf18bb9 | p@chr13:58291223..58291226, + |
| 7.06e-34 | FFCP PHASE2:Hg19::chr8:57353676..57353688,-#_aaa9a531d2afa327639069af7bf18bb9 | p@chr8:57353676..57353688, - |
| 9.85e-34 | FFCP PHASE1:Hg19::chr5:127873659..127873667,-#_92b6521d3cbcecdbff65c34ce3008303 | p12@FBN2 |
| 9.85e-34 | FFCP PHASE1:Hg19::chr5:19721484..19721507,-#_92b6521d3cbcecdbff65c34ce3008303 | p@chr5:19721484..19721507, - |
| 9.85e-34 | FFCP PHASE1:Hg19::chrX:133792540..133792551,-#_92b6521d3cbcecdbff65c34ce3008303 | p4@PLAC1 |
| 9.85e-34 | FFCP PHASE2:Hg19::chr5:127873659..127873667,-#_92b6521d3cbcecdbff65c34ce3008303 | p12@FBN2 |
| 9.85e-34 | FFCP PHASE2:Hg19::chr5:19721484..19721507,-#_92b6521d3cbcecdbff65c34ce3008303 | p@chr5:19721484..19721507, - |
| 9.85e-34 | FFCP PHASE2:Hg19::chrX:133792540..133792551,-#_92b6521d3cbcecdbff65c34ce3008303 | p4@PLAC1 |
| 7.48e-30 | FFCP PHASE1:Hg19::chr8:57354360..57354367,+#_411c941aa5dbe0ed5ed1308db0ed1b59 | p@chr8:57354360..57354367, + |
| 7.48e-30 | FFCP PHASE2:Hg19::chr8:57353804..57353821,-#_411c941aa5dbe0ed5ed1308db0ed1b59 | p@chr8:57353804..57353821, - |
| 7.48e-30 | FFCP PHASE1:Hg19::chr8:57353982..57353991,-#_411c941aa5dbe0ed5ed1308db0ed1b59 | p@chr8:57353982..57353991, - |
| 7.48e-30 | FFCP PHASE2:Hg19::chr8:57354360..57354367,+#_411c941aa5dbe0ed5ed1308db0ed1b59 | p@chr8:57354360..57354367, + |
| 7.48e-30 | FFCP PHASE2:Hg19::chr8:57353982..57353991,-#_411c941aa5dbe0ed5ed1308db0ed1b59 | p@chr8:57353982..57353991, - |
| 7.48e-30 | FFCP PHASE1:Hg19::chr8:57353804..57353821,-#_411c941aa5dbe0ed5ed1308db0ed1b59 | p@chr8:57353804..57353821, - |
| 9.99e-30 | FFCP PHASE1:Hg19::chr3:157824322..157824334,-#_bcb4082db006c11c24908455760a1638 | p7@SHOX2 |
| 9.99e-30 | FFCP PHASE1:Hg19::chr10:15762107..15762114,-#_bcb4082db006c11c24908455760a1638 | p10@ITGA8 |
| 9.99e-30 | FFCP PHASE2:Hg19::chr3:157824322..157824334,-#_bcb4082db006c11c24908455760a1638 | p7@SHOX2 |
| 9.99e-30 | FFCP PHASE2:Hg19::chr10:15762107..15762114,-#_bcb4082db006c11c24908455760a1638 | p10@ITGA8 |
| 1.33e-29 | FFCP PHASE1:Hg19::chrX:132670143..132670152,-#_634b54322dfc504cfe0ff58db0f9045f | p@chrX:132670143..132670152, - |
| 1.33e-29 | FFCP PHASE1:Hg19::chr17:79071218..79071221,-#_634b54322dfc504cfe0ff58db0f9045f | p@chr17:79071218..79071221, - |
| 1.33e-29 | FFCP PHASE1:Hg19::chr22:28193943..28193956,-#_634b54322dfc504cfe0ff58db0f9045f | p@chr22:28193943..28193956, - |
| 1.33e-29 | FFCP PHASE2:Hg19::chrX:132670143..132670152,-#_634b54322dfc504cfe0ff58db0f9045f | p@chrX:132670143..132670152, - |
| 1.33e-29 | FFCP PHASE2:Hg19::chr17:79071218..79071221,-#_634b54322dfc504cfe0ff58db0f9045f | p@chr17:79071218..79071221, - |
| 1.33e-29 | FFCP PHASE2:Hg19::chr22:28193943..28193956,-#_634b54322dfc504cfe0ff58db0f9045f | p@chr22:28193943..28193956, - |
| 1.78e-29 | FFCP PHASE1:Hg19::chr1:21904551..21904569,-#_5ef74f776c12d1ef220c3a0a47a359ea | p@chr1:21904551..21904569, - |
| 1.78e-29 | FFCP PHASE2:Hg19::chr1:21904551..21904569,-#_5ef74f776c12d1ef220c3a0a47a359ea | p@chr1:21904551..21904569, - |
| 3.16e-29 | FFCP PHASE1:Hg19::chr14:89044406..89044416,+#_73ae03f3ec1c3d3a9fd9c62ad9a5a9f7 | p@chr14:89044406..89044416, + |
| 3.16e-29 | FFCP PHASE1:Hg19::chr1:156470861..156470868,-#_73ae03f3ec1c3d3a9fd9c62ad9a5a9f7 | p18@MEF2D |
| 3.16e-29 | FFCP PHASE1:Hg19::chr8:57359975..57359992,-#_73ae03f3ec1c3d3a9fd9c62ad9a5a9f7 | p@chr8:57359975..57359992, - |
| 3.16e-29 | FFCP PHASE2:Hg19::chr1:156470861..156470868,-#_73ae03f3ec1c3d3a9fd9c62ad9a5a9f7 | p18@MEF2D |
| 3.16e-29 | FFCP PHASE2:Hg19::chr14:89044406..89044416,+#_73ae03f3ec1c3d3a9fd9c62ad9a5a9f7 | p@chr14:89044406..89044416, + |
| 3.16e-29 | FFCP PHASE2:Hg19::chr8:57359975..57359992,-#_73ae03f3ec1c3d3a9fd9c62ad9a5a9f7 | p@chr8:57359975..57359992, - |
| 4.2e-29 | FFCP PHASE2:Hg19::chr4:151503350..151503358,+#_2e9ad805a70042c47019aae9d456b54e | p11@MAB21L2 |
| 4.2e-29 | FFCP PHASE2:Hg19::chr1:75602768..75602785,+#_2e9ad805a70042c47019aae9d456b54e | p@chr1:75602768..75602785, + |
