UBERON:0005162: Difference between revisions
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{{UBERON | {{UBERON | ||
|id=UBERON:0005162 | |id=UBERON:0005162 | ||
|name=multi | |name=multi cell component structure | ||
|namespace= | |namespace= | ||
|def="A structure consisting of multiple cell components but which is not itself a cell and does not have (complete) cells as a part." [CARO:0001000] | |def="A structure consisting of multiple cell components but which is not itself a cell and does not have (complete) cells as a part." [CARO:0001000] | ||
|xref=AAO:0011000;;CARO:0001000;;FBbt:00007060 | |xref=AAO:0011000;;CARO:0001000;;FBbt:00007060;;FMA:83115 | ||
|is_a=UBERON: | |is_a=UBERON:0000477 | ||
|synonym= | |synonym="multi-cell-component structure" EXACT [CARO:0001000] | ||
|comment= | |comment=AO notes: we go with the FMA classification rather than the CARO one. FMA def: "Anatomical cluster which has as direct parts cell parts from two or more cells." | ||
|alt_id= | |alt_id= | ||
|disjoint_from= | |disjoint_from= | ||
| Line 14: | Line 14: | ||
|obo_creation_date= | |obo_creation_date= | ||
|subset=upper_level | |subset=upper_level | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
Revision as of 17:06, 26 June 2012
| Name: | multi cell component structure | ||
|---|---|---|---|
| Definition: | "A structure consisting of multiple cell components but which is not itself a cell and does not have (complete) cells as a part." [CARO:0001000] | ||
| Xrefs: |
| ||
| Synonyms: | "multi-cell-component structure" EXACT [CARO:0001000] | ||
| Comments: | AO notes: we go with the FMA classification rather than the CARO one. FMA def: "Anatomical cluster which has as direct parts cell parts from two or more cells." | ||
| Subset: | upper_level |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000477(anatomical cluster) |
|---|
Children
| is a: | UBERON:0000122 (neuron projection bundle),UBERON:0011215 (central nervous system cell part cluster) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10042-101F6 (corpus callosum, adult, pool1)
- 10277-104E7 (optic nerve, donor1)
- 10280-104F1
- 10305-104H8
- 10308-104I2
- 10333-105B9
- 10336-105C3
- 11959-126C6 (Neurons - spiral ganglion, pool1)
Mouse (Mus musculus)
- 10042-101F6 (corpus callosum, adult, pool1)
- 10277-104E7 (optic nerve, donor1)
- 10280-104F1
- 10305-104H8
- 10308-104I2
- 10333-105B9
- 10336-105C3
- 11959-126C6 (Neurons - spiral ganglion, pool1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005162 (multi cell component structure), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 3.29e-195 | FFCP PHASE1:Hg19::chr12:78359873..78359882,+#_e916713bf30b7d22486fdc409344ed40 | p41@NAV3 |
| 3.29e-195 | FFCP PHASE2:Hg19::chr12:78359873..78359882,+#_e916713bf30b7d22486fdc409344ed40 | p41@NAV3 |
| 4.61e-131 | FFCP PHASE1:Hg19::chr12:78359680..78359686,+#_53a2658fcdac90ac7c41446f05cbfc9d | p32@NAV3 |
| 4.61e-131 | FFCP PHASE2:Hg19::chr12:78359680..78359686,+#_53a2658fcdac90ac7c41446f05cbfc9d | p32@NAV3 |
| 8.99e-131 | FFCP PHASE1:Hg19::chr4:645709..645712,+#_669338847644d11df1b17ee01e4cf2eb | p15@PDE6B |
| 8.99e-131 | FFCP PHASE2:Hg19::chr4:645709..645712,+#_669338847644d11df1b17ee01e4cf2eb | p15@PDE6B |
| 5.68e-99 | FFCP PHASE1:Hg19::chrX:103031196..103031205,-#_a4dba5134d6d0f1c53bede352f8690ec | p@chrX:103031196..103031205, - |
| 5.68e-99 | FFCP PHASE1:Hg19::chr4:74005833..74005844,-#_a4dba5134d6d0f1c53bede352f8690ec | p@chr4:74005833..74005844, - |
| 5.68e-99 | FFCP PHASE2:Hg19::chr4:74005833..74005844,-#_a4dba5134d6d0f1c53bede352f8690ec | p@chr4:74005833..74005844, - |
| 5.68e-99 | FFCP PHASE2:Hg19::chrX:103031196..103031205,-#_a4dba5134d6d0f1c53bede352f8690ec | p@chrX:103031196..103031205, - |
| 9.38e-99 | FFCP PHASE1:Hg19::chr3:160203278..160203289,-#_fb6daf5576790bb7d1db07de10000383 | p8@TRIM59 |
| 9.38e-99 | FFCP PHASE1:Hg19::chr17:36726052..36726061,-#_fb6daf5576790bb7d1db07de10000383 | p@chr17:36726052..36726061, - |
| 9.38e-99 | FFCP PHASE2:Hg19::chr3:160203278..160203289,-#_fb6daf5576790bb7d1db07de10000383 | p8@TRIM59 |
| 9.38e-99 | FFCP PHASE2:Hg19::chr17:36726052..36726061,-#_fb6daf5576790bb7d1db07de10000383 | p@chr17:36726052..36726061, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr7:30202318..30202329,+#_f1e516eb9e10ea975d532c21866a7942 | p@chr7:30202318..30202329, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr15:93827399..93827403,+#_f1e516eb9e10ea975d532c21866a7942 | p@chr15:93827399..93827403, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr14:36462819..36462832,+#_f1e516eb9e10ea975d532c21866a7942 | p@chr14:36462819..36462832, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr12:57628762..57628773,-#_f1e516eb9e10ea975d532c21866a7942 | p@chr12:57628762..57628773, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr17:73689469..73689476,-#_f1e516eb9e10ea975d532c21866a7942 | p@chr17:73689469..73689476, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr12:57628762..57628773,-#_f1e516eb9e10ea975d532c21866a7942 | p@chr12:57628762..57628773, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr7:30202318..30202329,+#_f1e516eb9e10ea975d532c21866a7942 | p@chr7:30202318..30202329, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr5:60927228..60927236,-#_f1e516eb9e10ea975d532c21866a7942 | p3@BC032909, p3@BC032910 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr14:36462819..36462832,+#_f1e516eb9e10ea975d532c21866a7942 | p@chr14:36462819..36462832, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr17:73689469..73689476,-#_f1e516eb9e10ea975d532c21866a7942 | p@chr17:73689469..73689476, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr5:60927228..60927236,-#_f1e516eb9e10ea975d532c21866a7942 | p3@BC032909, p3@BC032910 |
| 1.55e-98 | FFCP PHASE2:Hg19::chr15:93827399..93827403,+#_f1e516eb9e10ea975d532c21866a7942 | p@chr15:93827399..93827403, + |
| 2.56e-98 | FFCP PHASE1:Hg19::chr11:117585539..117585541,-#_f2fc127f6215b9139ad5c69767ff54bc | p@chr11:117585539..117585541, - |
| 2.56e-98 | FFCP PHASE2:Hg19::chrX:28605300..28605301,+#_f2fc127f6215b9139ad5c69767ff54bc | p8@IL1RAPL1 |
| 2.56e-98 | FFCP PHASE1:Hg19::chrX:28605300..28605301,+#_f2fc127f6215b9139ad5c69767ff54bc | p8@IL1RAPL1 |
| 2.56e-98 | FFCP PHASE2:Hg19::chr11:117585539..117585541,-#_f2fc127f6215b9139ad5c69767ff54bc | p@chr11:117585539..117585541, - |
| 4.22e-98 | FFCP PHASE1:Hg19::chr12:99288459..99288464,-#_e9cc170b8bcd596739008df26eb8a569 | p38@ANKS1B |
| 4.22e-98 | FFCP PHASE2:Hg19::chr12:99288459..99288464,-#_e9cc170b8bcd596739008df26eb8a569 | p38@ANKS1B |
| 1.05e-79 | FFCP PHASE1:Hg19::chr14:35514351..35514356,+#_a6e231de0048cc15393c118ed8be3cec | p10@FAM177A1 |
| 1.05e-79 | FFCP PHASE1:Hg19::chr7:123673069..123673078,-#_a6e231de0048cc15393c118ed8be3cec | p3@TMEM229A |
| 1.05e-79 | FFCP PHASE2:Hg19::chr14:35514351..35514356,+#_a6e231de0048cc15393c118ed8be3cec | p10@FAM177A1 |
| 1.05e-79 | FFCP PHASE2:Hg19::chr7:123673069..123673078,-#_a6e231de0048cc15393c118ed8be3cec | p3@TMEM229A |
| 1.56e-79 | FFCP PHASE2:Hg19::chr1:113638921..113638937,+#_ca81e5411527e8407f2b6c863195a5fb | p@chr1:113638921..113638937, + |
| 1.56e-79 | FFCP PHASE2:Hg19::chr10:1246202..1246207,-#_ca81e5411527e8407f2b6c863195a5fb | p19@ADARB2 |
| 1.56e-79 | FFCP PHASE1:Hg19::chr10:1246202..1246207,-#_ca81e5411527e8407f2b6c863195a5fb | p19@ADARB2 |
| 1.56e-79 | FFCP PHASE1:Hg19::chr1:113638921..113638937,+#_ca81e5411527e8407f2b6c863195a5fb | p@chr1:113638921..113638937, + |
| 1.56e-79 | FFCP PHASE1:Hg19::chr7:149480688..149480699,+#_ca81e5411527e8407f2b6c863195a5fb | p@chr7:149480688..149480699, + |
| 1.56e-79 | FFCP PHASE2:Hg19::chr11:119846488..119846499,+#_ca81e5411527e8407f2b6c863195a5fb | p@chr11:119846488..119846499, + |
| 1.56e-79 | FFCP PHASE1:Hg19::chr11:119846488..119846499,+#_ca81e5411527e8407f2b6c863195a5fb | p@chr11:119846488..119846499, + |
| 1.56e-79 | FFCP PHASE2:Hg19::chr7:149480688..149480699,+#_ca81e5411527e8407f2b6c863195a5fb | p@chr7:149480688..149480699, + |
| 2.34e-79 | FFCP PHASE1:Hg19::chr7:75268487..75268499,-#_f24da1d8f364c08d239e657046fb7e0d | p@chr7:75268487..75268499, - |
| 2.34e-79 | FFCP PHASE1:Hg19::chr5:55069021..55069040,-#_f24da1d8f364c08d239e657046fb7e0d | p8@SLC38A9 |
| 2.34e-79 | FFCP PHASE2:Hg19::chr7:75268487..75268499,-#_f24da1d8f364c08d239e657046fb7e0d | p@chr7:75268487..75268499, - |
| 2.34e-79 | FFCP PHASE2:Hg19::chr19:1882247..1882274,-#_f24da1d8f364c08d239e657046fb7e0d | p5@FAM108A1 |
| 2.34e-79 | FFCP PHASE2:Hg19::chr5:55069021..55069040,-#_f24da1d8f364c08d239e657046fb7e0d | p8@SLC38A9 |
| 2.34e-79 | FFCP PHASE1:Hg19::chr19:1882247..1882274,-#_f24da1d8f364c08d239e657046fb7e0d | p5@FAM108A1 |
| 3.49e-79 | FFCP PHASE2:Hg19::chr10:1246245..1246252,-#_32cbfdc44adc1ce9ececf7ea12b423bd | p20@ADARB2 |
| 3.49e-79 | FFCP PHASE1:Hg19::chr10:1246245..1246252,-#_32cbfdc44adc1ce9ececf7ea12b423bd | p20@ADARB2 |
| 3.49e-79 | FFCP PHASE2:Hg19::chr22:41636943..41636946,-#_32cbfdc44adc1ce9ececf7ea12b423bd | p12@CHADL |
| 3.49e-79 | FFCP PHASE1:Hg19::chr22:41636943..41636946,-#_32cbfdc44adc1ce9ececf7ea12b423bd | p12@CHADL |
| 7.41e-67 | FFCP PHASE1:Hg19::chr8:22411813..22411825,+#_1759f0dc07785309dae8f3a44762a07b | p55@SORBS3 |
| 7.41e-67 | FFCP PHASE2:Hg19::chr8:22411813..22411825,+#_1759f0dc07785309dae8f3a44762a07b | p55@SORBS3 |
| 1.04e-66 | FFCP PHASE2:Hg19::chr17:76227461..76227467,+#_18722d41c476553def7f6fe32738b3e8 | p17@TMEM235 |
| 1.04e-66 | FFCP PHASE1:Hg19::chr17:76227461..76227467,+#_18722d41c476553def7f6fe32738b3e8 | p17@TMEM235 |
| 1.45e-66 | FFCP PHASE2:Hg19::chr2:102413776..102413787,+#_c7d70daaaf37b2915a286ad9df460d92 | p41@MAP4K4 |
| 1.45e-66 | FFCP PHASE1:Hg19::chr17:42992088..42992109,-#_c7d70daaaf37b2915a286ad9df460d92 | p@chr17:42992088..42992109, - |
| 1.45e-66 | FFCP PHASE1:Hg19::chr2:102413776..102413787,+#_c7d70daaaf37b2915a286ad9df460d92 | p41@MAP4K4 |
| 1.45e-66 | FFCP PHASE1:Hg19::chr3:135974687..135974698,+#_c7d70daaaf37b2915a286ad9df460d92 | p5@PCCB |
| 1.45e-66 | FFCP PHASE1:Hg19::chr9:104031973..104031984,+#_c7d70daaaf37b2915a286ad9df460d92 | p16@LPPR1 |
| 1.45e-66 | FFCP PHASE2:Hg19::chr3:135974687..135974698,+#_c7d70daaaf37b2915a286ad9df460d92 | p5@PCCB |
| 1.45e-66 | FFCP PHASE2:Hg19::chr17:42992088..42992109,-#_c7d70daaaf37b2915a286ad9df460d92 | p@chr17:42992088..42992109, - |
| 1.45e-66 | FFCP PHASE2:Hg19::chr9:92051280..92051285,-#_c7d70daaaf37b2915a286ad9df460d92 | p13@SEMA4D |
| 1.45e-66 | FFCP PHASE2:Hg19::chr9:104031973..104031984,+#_c7d70daaaf37b2915a286ad9df460d92 | p16@LPPR1 |
| 1.45e-66 | FFCP PHASE1:Hg19::chr9:92051280..92051285,-#_c7d70daaaf37b2915a286ad9df460d92 | p13@SEMA4D |
| 2.03e-66 | FFCP PHASE2:Hg19::chr16:81652549..81652560,+#_54ca4099f8c09102830cb57a837d13da | p1@AK094104 |
| 2.03e-66 | FFCP PHASE2:Hg19::chr2:201599836..201599844,-#_54ca4099f8c09102830cb57a837d13da | p3@LOC100507140 |
| 2.03e-66 | FFCP PHASE2:Hg19::chr14:75614593..75614605,-#_54ca4099f8c09102830cb57a837d13da | p13@TMED10 |
| 2.03e-66 | FFCP PHASE1:Hg19::chr2:201599836..201599844,-#_54ca4099f8c09102830cb57a837d13da | p3@LOC100507140 |
| 2.03e-66 | FFCP PHASE1:Hg19::chr14:75614593..75614605,-#_54ca4099f8c09102830cb57a837d13da | p13@TMED10 |
| 2.03e-66 | FFCP PHASE1:Hg19::chr16:81652549..81652560,+#_54ca4099f8c09102830cb57a837d13da | p1@AK094104 |
| 7.73e-66 | FFCP PHASE1:Hg19::chr5:86418005..86418017,-#_18c123a923e454ad3c321c4cb4a4923b | p@chr5:86418005..86418017, - |
| 7.73e-66 | FFCP PHASE2:Hg19::chr5:86418005..86418017,-#_18c123a923e454ad3c321c4cb4a4923b | p@chr5:86418005..86418017, - |
| 1.13e-57 | FFCP PHASE2:Hg19::chr9:135089670..135089681,-#_07a948c666081ead661db507ab9d7aec | p@chr9:135089670..135089681, - |
| 1.13e-57 | FFCP PHASE2:Hg19::chr10:22892347..22892352,-#_07a948c666081ead661db507ab9d7aec | p@chr10:22892347..22892352, - |
| 1.13e-57 | FFCP PHASE2:Hg19::chr15:79356834..79356842,-#_07a948c666081ead661db507ab9d7aec | p15@RASGRF1 |
| 1.13e-57 | FFCP PHASE2:Hg19::chr21:45725770..45725792,+#_07a948c666081ead661db507ab9d7aec | p@chr21:45725770..45725792, + |
| 1.13e-57 | FFCP PHASE1:Hg19::chr10:22892347..22892352,-#_07a948c666081ead661db507ab9d7aec | p@chr10:22892347..22892352, - |
| 1.13e-57 | FFCP PHASE1:Hg19::chr15:79356834..79356842,-#_07a948c666081ead661db507ab9d7aec | p15@RASGRF1 |
| 1.13e-57 | FFCP PHASE1:Hg19::chr21:45725770..45725792,+#_07a948c666081ead661db507ab9d7aec | p@chr21:45725770..45725792, + |
| 1.13e-57 | FFCP PHASE1:Hg19::chr9:135089670..135089681,-#_07a948c666081ead661db507ab9d7aec | p@chr9:135089670..135089681, - |
| 1.51e-57 | FFCP PHASE2:Hg19::chr17:76227978..76227989,+#_c25c97011797477e20066a1c14118a56 | p15@TMEM235 |
| 1.51e-57 | FFCP PHASE1:Hg19::chr17:76227978..76227989,+#_c25c97011797477e20066a1c14118a56 | p15@TMEM235 |
| 2.02e-57 | FFCP PHASE2:Hg19::chr10:14614090..14614091,-#_1717b46e094f87d95a36e6f7bcc4eda1 | p22@FAM107B |
| 2.02e-57 | FFCP PHASE1:Hg19::chr22:41636994..41637004,-#_1717b46e094f87d95a36e6f7bcc4eda1 | p9@CHADL |
| 2.02e-57 | FFCP PHASE2:Hg19::chr3:183543234..183543241,-#_1717b46e094f87d95a36e6f7bcc4eda1 | p7@MAP6D1 |
| 2.02e-57 | FFCP PHASE1:Hg19::chr10:14614090..14614091,-#_1717b46e094f87d95a36e6f7bcc4eda1 | p22@FAM107B |
| 2.02e-57 | FFCP PHASE2:Hg19::chr1:155940355..155940366,-#_1717b46e094f87d95a36e6f7bcc4eda1 | p43@ARHGEF2 |
| 2.02e-57 | FFCP PHASE1:Hg19::chr8:26491518..26491523,+#_1717b46e094f87d95a36e6f7bcc4eda1 | p@chr8:26491518..26491523, + |
| 2.02e-57 | FFCP PHASE1:Hg19::chr1:155940355..155940366,-#_1717b46e094f87d95a36e6f7bcc4eda1 | p43@ARHGEF2 |
| 2.02e-57 | FFCP PHASE1:Hg19::chr12:48166059..48166070,+#_1717b46e094f87d95a36e6f7bcc4eda1 | p@chr12:48166059..48166070, + |
| 2.02e-57 | FFCP PHASE2:Hg19::chr22:41636994..41637004,-#_1717b46e094f87d95a36e6f7bcc4eda1 | p9@CHADL |
| 2.02e-57 | FFCP PHASE1:Hg19::chr3:183543234..183543241,-#_1717b46e094f87d95a36e6f7bcc4eda1 | p7@MAP6D1 |
| 2.02e-57 | FFCP PHASE2:Hg19::chr8:26491518..26491523,+#_1717b46e094f87d95a36e6f7bcc4eda1 | p@chr8:26491518..26491523, + |
| 2.02e-57 | FFCP PHASE2:Hg19::chr12:48166059..48166070,+#_1717b46e094f87d95a36e6f7bcc4eda1 | p@chr12:48166059..48166070, + |
| 2.69e-57 | FFCP PHASE1:Hg19::chr19:31158547..31158552,+#_767f08fd25dde3fe418d5a3e84a88e9e | p@chr19:31158547..31158552, + |
| 2.69e-57 | FFCP PHASE1:Hg19::chr17:76247000..76247021,-#_767f08fd25dde3fe418d5a3e84a88e9e | p@chr17:76247000..76247021, - |
