UBERON:0004362: Difference between revisions
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{{UBERON | {{UBERON | ||
|id=UBERON:0004362 | |id=UBERON:0004362 | ||
|name= | |name=pharyngeal arch 1 | ||
|namespace= | |namespace= | ||
|def="First of six branchial arches that develops in fetal life during the fourth week of development.[1] It is located between the stomodeum and the first pharyngeal groove." [Wikipedia: | |def="First of six branchial arches that develops in fetal life during the fourth week of development.[1] It is located between the stomodeum and the first pharyngeal groove." [Wikipedia:First_pharyngeal_arch] | ||
|xref=AAO:0010364;;EHDAA:573;; | |xref=AAO:0010364;;EHDAA2:0000006;;EHDAA:573;;EMAPA:16118;;http://upload.wikimedia.org/wikipedia/commons/2/2d/Gray48.png;;http://upload.wikimedia.org/wikipedia/commons/thumb/2/2d/Gray48.png/200px-Gray48.png;;ncithesaurus:First_Pharyngeal_Arch;;SCTID:308767008;;TAO:0001595;;VHOG:0000296;;XAO:0000097;;ZFA:0001612 | ||
|is_a=UBERON:0002539 | |is_a=UBERON:0002539 | ||
|synonym="1st arch" RELATED [EHDAA2:0000006];;"1st pharyngeal arch" EXACT [];;"branchial arch 1" EXACT SENSU [];;"first branchial arch" EXACT SENSU [];;"first pharyngeal arch" EXACT [];;"first visceral arch" EXACT SENSU [];;" | |synonym="1st arch" RELATED [EHDAA2:0000006];;"1st pharyngeal arch" EXACT [];;"arcus pharyngeus primus" RELATED LATIN [Wikipedia:First_pharyngeal_arch];;"branchial arch 1" EXACT SENSU [];;"first branchial arch" EXACT SENSU [];;"first pharyngeal arch" EXACT [];;"first visceral arch" EXACT SENSU [];;"mandibular arch" EXACT [];;"visceral arch 1" EXACT SENSU [] | ||
|comment= | |comment= | ||
|alt_id= | |alt_id= | ||
| Line 14: | Line 14: | ||
|obo_creation_date= | |obo_creation_date= | ||
|subset=uberon_slim;;vertebrate_core | |subset=uberon_slim;;vertebrate_core | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
| Line 20: | Line 19: | ||
|located_in= | |located_in= | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "The first of the series of bony or cartilaginous arches that develop in the walls of the mouth cavity and pharynx of the embryo.[AAO]" xsd:string | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 17:05, 26 June 2012
| Name: | pharyngeal arch 1 | ||
|---|---|---|---|
| Definition: | "First of six branchial arches that develops in fetal life during the fourth week of development.[1] It is located between the stomodeum and the first pharyngeal groove." [Wikipedia:First_pharyngeal_arch] | ||
| Xrefs: |
| ||
| Synonyms: |
"1st arch" RELATED [EHDAA2:0000006] "1st pharyngeal arch" EXACT [] "arcus pharyngeus primus" RELATED LATIN [Wikipedia:First_pharyngeal_arch] "branchial arch 1" EXACT SENSU [] "first branchial arch" EXACT SENSU [] "first pharyngeal arch" EXACT [] "first visceral arch" EXACT SENSU [] "mandibular arch" EXACT [] "visceral arch 1" EXACT SENSU [] | ||
| Subset: |
uberon_slim vertebrate_core |
Gray48.png]
200px-Gray48.png]
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0002539(pharyngeal arch) |
|---|
Children
| part of: | UBERON:0007238 (1st arch maxillary component),UBERON:0010042 (1st arch mesenchyme) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004362 (pharyngeal arch 1), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.42e-195 | FFCP PHASE2:Hg19::chr17:54893192..54893195,-#_478d85bb1133ec2d024817229b513992 | p14@C17orf67 |
| 5.42e-195 | FFCP PHASE1:Hg19::chr17:54893192..54893195,-#_478d85bb1133ec2d024817229b513992 | p14@C17orf67 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr17:54893213..54893220,-#_7eecffe7a1af54b4a0f049eee18a149b | p12@C17orf67 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr17:54893269..54893278,-#_7eecffe7a1af54b4a0f049eee18a149b | p11@C17orf67 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr17:54893269..54893278,-#_7eecffe7a1af54b4a0f049eee18a149b | p11@C17orf67 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr17:54893292..54893300,-#_7eecffe7a1af54b4a0f049eee18a149b | p13@C17orf67 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr17:54893292..54893300,-#_7eecffe7a1af54b4a0f049eee18a149b | p13@C17orf67 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr8:57353655..57353662,-#_7eecffe7a1af54b4a0f049eee18a149b | p@chr8:57353655..57353662, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr17:54893213..54893220,-#_7eecffe7a1af54b4a0f049eee18a149b | p12@C17orf67 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr8:57353655..57353662,-#_7eecffe7a1af54b4a0f049eee18a149b | p@chr8:57353655..57353662, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr4:151503647..151503656,+#_f320f64724ddd24a9e1c8c87f0939894 | p14@MAB21L2 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr4:151503647..151503656,+#_f320f64724ddd24a9e1c8c87f0939894 | p14@MAB21L2 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr5:75912402..75912418,-#_f320f64724ddd24a9e1c8c87f0939894 | p@chr5:75912402..75912418, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr5:75912402..75912418,-#_f320f64724ddd24a9e1c8c87f0939894 | p@chr5:75912402..75912418, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr4:151505582..151505614,+#_7b2484d74d559bc4a5b13ba0be9a315f | p@chr4:151505582..151505614, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr4:151505582..151505614,+#_7b2484d74d559bc4a5b13ba0be9a315f | p@chr4:151505582..151505614, + |
| 1.46e-50 | FFCP PHASE1:Hg19::chr8:57354278..57354286,+#_d6c3c9d5a8045da285b6161fda82c50d | p@chr8:57354278..57354286, + |
| 1.46e-50 | FFCP PHASE2:Hg19::chr8:57354278..57354286,+#_d6c3c9d5a8045da285b6161fda82c50d | p@chr8:57354278..57354286, + |
| 1.46e-50 | FFCP PHASE1:Hg19::chr3:157823323..157823328,+#_d6c3c9d5a8045da285b6161fda82c50d | p17@RSRC1 |
| 1.46e-50 | FFCP PHASE2:Hg19::chr17:54893196..54893207,-#_d6c3c9d5a8045da285b6161fda82c50d | p9@C17orf67 |
| 1.46e-50 | FFCP PHASE2:Hg19::chr3:157823323..157823328,+#_d6c3c9d5a8045da285b6161fda82c50d | p17@RSRC1 |
| 1.46e-50 | FFCP PHASE1:Hg19::chr17:54893196..54893207,-#_d6c3c9d5a8045da285b6161fda82c50d | p9@C17orf67 |
| 2.42e-50 | FFCP PHASE1:Hg19::chr8:57802672..57802682,-#_6a3e6224f049b8f9731a0be25bec351b | p@chr8:57802672..57802682, - |
| 2.42e-50 | FFCP PHASE2:Hg19::chr8:57802672..57802682,-#_6a3e6224f049b8f9731a0be25bec351b | p@chr8:57802672..57802682, - |
| 3.99e-50 | FFCP PHASE1:Hg19::chr5:75913767..75913778,-#_8b1563dd0a480448b944159f5751cb98 | p@chr5:75913767..75913778, - |
| 3.99e-50 | FFCP PHASE1:Hg19::chr12:85673913..85673919,+#_8b1563dd0a480448b944159f5751cb98 | p7@ALX1 |
| 3.99e-50 | FFCP PHASE2:Hg19::chr5:75913767..75913778,-#_8b1563dd0a480448b944159f5751cb98 | p@chr5:75913767..75913778, - |
| 3.99e-50 | FFCP PHASE2:Hg19::chr17:76930661..76930674,+#_8b1563dd0a480448b944159f5751cb98 | p1@AK123925 |
| 3.99e-50 | FFCP PHASE1:Hg19::chr17:76930661..76930674,+#_8b1563dd0a480448b944159f5751cb98 | p1@AK123925 |
| 3.99e-50 | FFCP PHASE2:Hg19::chr12:85673913..85673919,+#_8b1563dd0a480448b944159f5751cb98 | p7@ALX1 |
| 6.58e-50 | FFCP PHASE2:Hg19::chr13:28961248..28961262,-#_83953bd91a2f1d03c5e183b1fa385a19 | p23@FLT1 |
| 6.58e-50 | FFCP PHASE1:Hg19::chr2:33519090..33519092,+#_83953bd91a2f1d03c5e183b1fa385a19 | p@chr2:33519090..33519092, + |
| 6.58e-50 | FFCP PHASE2:Hg19::chr2:33519090..33519092,+#_83953bd91a2f1d03c5e183b1fa385a19 | p@chr2:33519090..33519092, + |
| 6.58e-50 | FFCP PHASE1:Hg19::chr13:28961248..28961262,-#_83953bd91a2f1d03c5e183b1fa385a19 | p23@FLT1 |
| 6.62e-41 | FFCP PHASE2:Hg19::chr8:57353666..57353675,-#_a8d165a96ce222fd5934e04b072e348e | p@chr8:57353666..57353675, - |
| 6.62e-41 | FFCP PHASE1:Hg19::chr8:57353779..57353790,-#_a8d165a96ce222fd5934e04b072e348e | p@chr8:57353779..57353790, - |
| 6.62e-41 | FFCP PHASE1:Hg19::chr8:57354143..57354152,+#_a8d165a96ce222fd5934e04b072e348e | p@chr8:57354143..57354152, + |
| 6.62e-41 | FFCP PHASE1:Hg19::chr8:57353666..57353675,-#_a8d165a96ce222fd5934e04b072e348e | p@chr8:57353666..57353675, - |
| 6.62e-41 | FFCP PHASE2:Hg19::chr8:57354143..57354152,+#_a8d165a96ce222fd5934e04b072e348e | p@chr8:57354143..57354152, + |
| 6.62e-41 | FFCP PHASE2:Hg19::chr8:57353779..57353790,-#_a8d165a96ce222fd5934e04b072e348e | p@chr8:57353779..57353790, - |
| 1.48e-40 | FFCP PHASE1:Hg19::chr1:6615391..6615401,+#_cc93c584e126fae87033e162e7653b0d | p2@TAS1R1 |
| 1.48e-40 | FFCP PHASE2:Hg19::chr1:6615391..6615401,+#_cc93c584e126fae87033e162e7653b0d | p2@TAS1R1 |
| 1.48e-40 | FFCP PHASE2:Hg19::chr1:75600308..75600316,+#_cc93c584e126fae87033e162e7653b0d | p8@LHX8 |
| 1.48e-40 | FFCP PHASE1:Hg19::chr1:75600308..75600316,+#_cc93c584e126fae87033e162e7653b0d | p8@LHX8 |
| 1.48e-40 | FFCP PHASE2:Hg19::chr20:49253452..49253461,-#_cc93c584e126fae87033e162e7653b0d | p12@FAM65C |
| 1.48e-40 | FFCP PHASE1:Hg19::chr20:49253452..49253461,-#_cc93c584e126fae87033e162e7653b0d | p12@FAM65C |
| 2.21e-40 | FFCP PHASE2:Hg19::chr5:75912831..75912842,-#_68ea1c095883480f52c394119e6e335a | p@chr5:75912831..75912842, - |
| 2.21e-40 | FFCP PHASE2:Hg19::chr16:67687543..67687559,-#_68ea1c095883480f52c394119e6e335a | p@chr16:67687543..67687559, - |
| 2.21e-40 | FFCP PHASE1:Hg19::chr16:67687543..67687559,-#_68ea1c095883480f52c394119e6e335a | p@chr16:67687543..67687559, - |
| 2.21e-40 | FFCP PHASE1:Hg19::chr5:75912831..75912842,-#_68ea1c095883480f52c394119e6e335a | p@chr5:75912831..75912842, - |
| 3.3e-40 | FFCP PHASE2:Hg19::chr9:125165007..125165016,+#_dc19854154ae263c2f4ac0dec7ee8482 | p@chr9:125165007..125165016, + |
| 3.3e-40 | FFCP PHASE2:Hg19::chr6:46190219..46190230,-#_dc19854154ae263c2f4ac0dec7ee8482 | p@chr6:46190219..46190230, - |
| 3.3e-40 | FFCP PHASE1:Hg19::chr9:125165007..125165016,+#_dc19854154ae263c2f4ac0dec7ee8482 | p@chr9:125165007..125165016, + |
| 3.3e-40 | FFCP PHASE1:Hg19::chr6:46190219..46190230,-#_dc19854154ae263c2f4ac0dec7ee8482 | p@chr6:46190219..46190230, - |
| 1.84e-34 | FFCP PHASE2:Hg19::chr4:8594472..8594473,+#_5180c0a38d6dbaf04721dd85fc1fa07f | p4@CPZ |
| 1.84e-34 | FFCP PHASE1:Hg19::chr8:57359557..57359570,-#_5180c0a38d6dbaf04721dd85fc1fa07f | p5@PENK |
| 1.84e-34 | FFCP PHASE2:Hg19::chr10:15760985..15760992,-#_5180c0a38d6dbaf04721dd85fc1fa07f | p@chr10:15760985..15760992, - |
| 1.84e-34 | FFCP PHASE2:Hg19::chr8:57359557..57359570,-#_5180c0a38d6dbaf04721dd85fc1fa07f | p5@PENK |
| 1.84e-34 | FFCP PHASE1:Hg19::chr4:8594472..8594473,+#_5180c0a38d6dbaf04721dd85fc1fa07f | p4@CPZ |
| 1.84e-34 | FFCP PHASE1:Hg19::chr10:15760985..15760992,-#_5180c0a38d6dbaf04721dd85fc1fa07f | p@chr10:15760985..15760992, - |
| 2.58e-34 | FFCP PHASE2:Hg19::chr14:61125018..61125037,-#_503c8cdd6a41e9ddfdc0da46ea264ffd | p9@SIX1 |
| 2.58e-34 | FFCP PHASE1:Hg19::chr14:61125018..61125037,-#_503c8cdd6a41e9ddfdc0da46ea264ffd | p9@SIX1 |
| 5.05e-34 | FFCP PHASE1:Hg19::chr6:134327986..134327991,-#_3bfe5fcb3a885c9be518b9d232fadb2e | p@chr6:134327986..134327991, - |
| 5.05e-34 | FFCP PHASE2:Hg19::chr6:134327986..134327991,-#_3bfe5fcb3a885c9be518b9d232fadb2e | p@chr6:134327986..134327991, - |
| 7.06e-34 | FFCP PHASE2:Hg19::chr13:58291223..58291226,+#_ab48e9eacea3c0964cfe098274e14574 | p@chr13:58291223..58291226, + |
| 7.06e-34 | FFCP PHASE2:Hg19::chr8:57353676..57353688,-#_ab48e9eacea3c0964cfe098274e14574 | p@chr8:57353676..57353688, - |
| 7.06e-34 | FFCP PHASE1:Hg19::chr13:58291223..58291226,+#_ab48e9eacea3c0964cfe098274e14574 | p@chr13:58291223..58291226, + |
| 7.06e-34 | FFCP PHASE1:Hg19::chr8:57353676..57353688,-#_ab48e9eacea3c0964cfe098274e14574 | p@chr8:57353676..57353688, - |
| 9.85e-34 | FFCP PHASE1:Hg19::chrX:133792540..133792551,-#_c5507ff94ab1130d093e1cba43aab934 | p4@PLAC1 |
| 9.85e-34 | FFCP PHASE2:Hg19::chr5:127873659..127873667,-#_c5507ff94ab1130d093e1cba43aab934 | p12@FBN2 |
| 9.85e-34 | FFCP PHASE2:Hg19::chr5:19721484..19721507,-#_c5507ff94ab1130d093e1cba43aab934 | p@chr5:19721484..19721507, - |
| 9.85e-34 | FFCP PHASE2:Hg19::chrX:133792540..133792551,-#_c5507ff94ab1130d093e1cba43aab934 | p4@PLAC1 |
| 9.85e-34 | FFCP PHASE1:Hg19::chr5:127873659..127873667,-#_c5507ff94ab1130d093e1cba43aab934 | p12@FBN2 |
| 9.85e-34 | FFCP PHASE1:Hg19::chr5:19721484..19721507,-#_c5507ff94ab1130d093e1cba43aab934 | p@chr5:19721484..19721507, - |
| 7.48e-30 | FFCP PHASE2:Hg19::chr8:57353804..57353821,-#_715eca560da61cf08efa95b73ba49656 | p@chr8:57353804..57353821, - |
| 7.48e-30 | FFCP PHASE1:Hg19::chr8:57353982..57353991,-#_715eca560da61cf08efa95b73ba49656 | p@chr8:57353982..57353991, - |
| 7.48e-30 | FFCP PHASE2:Hg19::chr8:57354360..57354367,+#_715eca560da61cf08efa95b73ba49656 | p@chr8:57354360..57354367, + |
| 7.48e-30 | FFCP PHASE2:Hg19::chr8:57353982..57353991,-#_715eca560da61cf08efa95b73ba49656 | p@chr8:57353982..57353991, - |
| 7.48e-30 | FFCP PHASE1:Hg19::chr8:57353804..57353821,-#_715eca560da61cf08efa95b73ba49656 | p@chr8:57353804..57353821, - |
| 7.48e-30 | FFCP PHASE1:Hg19::chr8:57354360..57354367,+#_715eca560da61cf08efa95b73ba49656 | p@chr8:57354360..57354367, + |
| 9.99e-30 | FFCP PHASE1:Hg19::chr10:15762107..15762114,-#_8efbe51384e570b1b35e58e72144568d | p10@ITGA8 |
| 9.99e-30 | FFCP PHASE1:Hg19::chr3:157824322..157824334,-#_8efbe51384e570b1b35e58e72144568d | p7@SHOX2 |
| 9.99e-30 | FFCP PHASE2:Hg19::chr3:157824322..157824334,-#_8efbe51384e570b1b35e58e72144568d | p7@SHOX2 |
| 9.99e-30 | FFCP PHASE2:Hg19::chr10:15762107..15762114,-#_8efbe51384e570b1b35e58e72144568d | p10@ITGA8 |
| 1.33e-29 | FFCP PHASE1:Hg19::chrX:132670143..132670152,-#_8d4a66f65fe7ee497ab7481014436274 | p@chrX:132670143..132670152, - |
| 1.33e-29 | FFCP PHASE2:Hg19::chrX:132670143..132670152,-#_8d4a66f65fe7ee497ab7481014436274 | p@chrX:132670143..132670152, - |
| 1.33e-29 | FFCP PHASE2:Hg19::chr17:79071218..79071221,-#_8d4a66f65fe7ee497ab7481014436274 | p@chr17:79071218..79071221, - |
| 1.33e-29 | FFCP PHASE1:Hg19::chr17:79071218..79071221,-#_8d4a66f65fe7ee497ab7481014436274 | p@chr17:79071218..79071221, - |
| 1.33e-29 | FFCP PHASE2:Hg19::chr22:28193943..28193956,-#_8d4a66f65fe7ee497ab7481014436274 | p@chr22:28193943..28193956, - |
| 1.33e-29 | FFCP PHASE1:Hg19::chr22:28193943..28193956,-#_8d4a66f65fe7ee497ab7481014436274 | p@chr22:28193943..28193956, - |
| 1.78e-29 | FFCP PHASE1:Hg19::chr1:21904551..21904569,-#_6a8e72ab3d4b2a68ee209595570d44f8 | p@chr1:21904551..21904569, - |
| 1.78e-29 | FFCP PHASE2:Hg19::chr1:21904551..21904569,-#_6a8e72ab3d4b2a68ee209595570d44f8 | p@chr1:21904551..21904569, - |
| 3.16e-29 | FFCP PHASE1:Hg19::chr14:89044406..89044416,+#_546c226781f0ea3efbea62c156a3ebc4 | p@chr14:89044406..89044416, + |
| 3.16e-29 | FFCP PHASE1:Hg19::chr8:57359975..57359992,-#_546c226781f0ea3efbea62c156a3ebc4 | p@chr8:57359975..57359992, - |
| 3.16e-29 | FFCP PHASE1:Hg19::chr1:156470861..156470868,-#_546c226781f0ea3efbea62c156a3ebc4 | p18@MEF2D |
| 3.16e-29 | FFCP PHASE2:Hg19::chr1:156470861..156470868,-#_546c226781f0ea3efbea62c156a3ebc4 | p18@MEF2D |
| 3.16e-29 | FFCP PHASE2:Hg19::chr14:89044406..89044416,+#_546c226781f0ea3efbea62c156a3ebc4 | p@chr14:89044406..89044416, + |
| 3.16e-29 | FFCP PHASE2:Hg19::chr8:57359975..57359992,-#_546c226781f0ea3efbea62c156a3ebc4 | p@chr8:57359975..57359992, - |
| 4.2e-29 | FFCP PHASE2:Hg19::chr15:52606315..52606320,-#_90195c617544e34bba2f4772b8ebe477 | p@chr15:52606315..52606320, - |
| 4.2e-29 | FFCP PHASE1:Hg19::chr1:75602768..75602785,+#_90195c617544e34bba2f4772b8ebe477 | p@chr1:75602768..75602785, + |
Property "Property value" (as page type) with input value "UBPROP:0000001 "The first of the series of bony or cartilaginous arches that develop in the walls of the mouth cavity and pharynx of the embryo.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
