UBERON:0003914: Difference between revisions
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Revision as of 17:04, 26 June 2012
| Name: | epithelial tube | ||
|---|---|---|---|
| Definition: | "Epithelial tubes transport gases, liquids and cells from one site to another and form the basic structure of many organs and tissues, with tube shape and organization varying from the single-celled excretory organ in Caenorhabditis elegans to the branching trees of the mammalian kidney and insect tracheal system." [GO:0060562, PMID:12526790] | ||
| Xrefs: |
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Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000025(tube),UBERON:0000483(epithelium) |
|---|
Children
| is a: | UBERON:0000083 (mesonephric tubule),UBERON:0001049 (neural tube),UBERON:0003915 (endothelial tube),UBERON:0004141 (heart tube),UBERON:0004912 (biliary bud),UBERON:0007499 (epithelial sac),UBERON:0007500 (epithelial tube open at both ends),UBERON:0007684 (uriniferous tubule),UBERON:0009201 (nephric duct),UBERON:0009773 (renal tubule),UBERON:0010532 (primitive nephron) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10052-101G7 (aorta, adult, pool1)
- 10190-103E1 (artery, adult)
- 10191-103E2 (vein, adult)
- 10708-109H6 (alveolar cell carcinoma cell line:SW 1573)
- 10709-109H7 (bronchioalveolar carcinoma cell line:NCI-H358)
- 10715-109I4 (bronchioalveolar carcinoma cell line:NCI-H650)
- 11207-116A1 (Endothelial Cells - Aortic, donor0)
- 11210-116A4 (Smooth Muscle Cells - Aortic, donor0)
- 11212-116A6 (Smooth Muscle Cells - Umbilical artery, donor0)
- 11243-116E1 (Endothelial Cells - Umbilical vein, donor1)
... further results Mouse (Mus musculus)
- 10052-101G7 (aorta, adult, pool1)
- 10190-103E1 (artery, adult)
- 10191-103E2 (vein, adult)
- 10708-109H6 (alveolar cell carcinoma cell line:SW 1573)
- 10709-109H7 (bronchioalveolar carcinoma cell line:NCI-H358)
- 10715-109I4 (bronchioalveolar carcinoma cell line:NCI-H650)
- 11207-116A1 (Endothelial Cells - Aortic, donor0)
- 11210-116A4 (Smooth Muscle Cells - Aortic, donor0)
- 11212-116A6 (Smooth Muscle Cells - Umbilical artery, donor0)
- 11243-116E1 (Endothelial Cells - Umbilical vein, donor1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003914 (epithelial tube), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 9.79e-70 | FFCP PHASE1:Hg19::chr8:55370720..55370733,+#_1976c6b1ae3e3e0d17ce9f9d689a048e | p2@SOX17 |
| 9.79e-70 | FFCP PHASE2:Hg19::chr8:55370720..55370733,+#_1976c6b1ae3e3e0d17ce9f9d689a048e | p2@SOX17 |
| 1.08e-52 | FFCP PHASE1:Hg19::chr12:96830430..96830450,+#_aae32a98d14b6bbdcc9cdb3201ba4728 | p@chr12:96830430..96830450, + |
| 1.08e-52 | FFCP PHASE2:Hg19::chr12:96830430..96830450,+#_aae32a98d14b6bbdcc9cdb3201ba4728 | p@chr12:96830430..96830450, + |
| 1.37e-49 | FFCP PHASE2:Hg19::chr4:70653649..70653665,-#_de273e7a8c73330f663856e8d12f79c9 | p4@SULT1B1 |
| 1.37e-49 | FFCP PHASE1:Hg19::chr4:70653649..70653665,-#_de273e7a8c73330f663856e8d12f79c9 | p4@SULT1B1 |
| 4.97e-48 | FFCP PHASE2:Mm9::chr12:29308215..29308236,-#_c0a49a7dd4e27ff06221ed27a0159c8a | p4@Colec11 |
| 4.97e-48 | FFCP PHASE1:Mm9::chr12:29308215..29308236,-#_c0a49a7dd4e27ff06221ed27a0159c8a | p4@Colec11 |
| 4.44e-46 | FFCP PHASE2:Hg19::chr7:22629318..22629324,+#_21e1160ddaee103f6a0d340e5d22518a | p1@ENST00000439823 |
| 4.44e-46 | FFCP PHASE1:Hg19::chr7:22629318..22629324,+#_21e1160ddaee103f6a0d340e5d22518a | p1@ENST00000439823 |
| 1.41e-45 | FFCP PHASE1:Hg19::chr3:30334038..30334060,+#_d8dbdbc4e14a300152cd00cf8f913f94 | p@chr3:30334038..30334060, + |
| 1.41e-45 | FFCP PHASE2:Hg19::chr3:30334038..30334060,+#_d8dbdbc4e14a300152cd00cf8f913f94 | p@chr3:30334038..30334060, + |
| 4.41e-45 | FFCP PHASE1:Hg19::chr4:70653673..70653688,-#_4a30bf7067acb38c30b17e1dd8a61e76 | p3@SULT1B1 |
| 4.41e-45 | FFCP PHASE2:Hg19::chr4:70653673..70653688,-#_4a30bf7067acb38c30b17e1dd8a61e76 | p3@SULT1B1 |
| 1.09e-44 | FFCP PHASE2:Hg19::chr22:50553000..50553012,+#_8cc1936b5cd053a01f3c3fc42b7575bf | p2@MOV10L1 |
| 1.09e-44 | FFCP PHASE1:Hg19::chr22:50553000..50553012,+#_8cc1936b5cd053a01f3c3fc42b7575bf | p2@MOV10L1 |
| 9.77e-44 | FFCP PHASE2:Hg19::chr2:109271481..109271493,+#_17fb7141e4c9f0090a46691d7a35aaa9 | p6@LIMS1 |
| 9.77e-44 | FFCP PHASE1:Hg19::chr2:109271481..109271493,+#_17fb7141e4c9f0090a46691d7a35aaa9 | p6@LIMS1 |
| 1.78e-43 | FFCP PHASE2:Hg19::chr4:145567374..145567390,+#_0da19eabcf0e33e9bf2b1d6ec66ccbf8 | p6@HHIP |
| 1.78e-43 | FFCP PHASE1:Hg19::chr4:145567374..145567390,+#_0da19eabcf0e33e9bf2b1d6ec66ccbf8 | p6@HHIP |
| 6.53e-43 | FFCP PHASE2:Hg19::chr11:128562673..128562716,-#_f63927cd842b0b370b87f7a7d954eccc | p@chr11:128562673..128562716, - |
| 6.53e-43 | FFCP PHASE1:Hg19::chr11:128562673..128562716,-#_f63927cd842b0b370b87f7a7d954eccc | p@chr11:128562673..128562716, - |
| 1.02e-42 | FFCP PHASE1:Hg19::chr1:21606171..21606188,-#_ed446576180bc67a01489350568dd721 | p10@ECE1 |
| 1.02e-42 | FFCP PHASE2:Hg19::chr1:21606171..21606188,-#_ed446576180bc67a01489350568dd721 | p10@ECE1 |
| 2.23e-42 | FFCP PHASE2:Hg19::chr16:3115299..3115312,+#_125f94af072e3fb89b297c826383f870 | p5@IL32 |
| 2.23e-42 | FFCP PHASE1:Hg19::chr16:3115299..3115312,+#_125f94af072e3fb89b297c826383f870 | p5@IL32 |
| 4.37e-42 | FFCP PHASE2:Mm9::chr12:29308178..29308194,-#_b4784fca80c7183d08b1bfababea28f3 | p2@Colec11 |
| 4.37e-42 | FFCP PHASE1:Mm9::chr12:29308178..29308194,-#_b4784fca80c7183d08b1bfababea28f3 | p2@Colec11 |
| 6.19e-42 | FFCP PHASE1:Hg19::chr22:21138343..21138378,+#_b8e3b085f40894186b63f54248124a79 | p@chr22:21138343..21138378, + |
| 6.19e-42 | FFCP PHASE2:Hg19::chr22:21138343..21138378,+#_b8e3b085f40894186b63f54248124a79 | p@chr22:21138343..21138378, + |
| 1.5e-40 | FFCP PHASE2:Hg19::chr8:55370487..55370503,+#_13740cf525504425d6de4b656ca2f129 | p1@SOX17 |
| 1.5e-40 | FFCP PHASE1:Hg19::chr8:55370487..55370503,+#_13740cf525504425d6de4b656ca2f129 | p1@SOX17 |
| 1.7e-40 | FFCP PHASE2:Mm9::chr12:29308147..29308161,-#_fd2dc363bbd37c87b34a72aeb89b001b | p1@Colec11 |
| 1.7e-40 | FFCP PHASE1:Mm9::chr12:29308147..29308161,-#_fd2dc363bbd37c87b34a72aeb89b001b | p1@Colec11 |
| 2.54e-40 | FFCP PHASE1:Mm9::chr12:29308237..29308259,-#_7db6c8337511a33583aff802309eaf5d | p3@Colec11 |
| 2.54e-40 | FFCP PHASE2:Mm9::chr12:29308237..29308259,-#_7db6c8337511a33583aff802309eaf5d | p3@Colec11 |
| 3.97e-40 | FFCP PHASE1:Hg19::chr4:145567391..145567425,+#_09f6481be00b0c43c1575d002d225ef4 | p4@HHIP |
| 3.97e-40 | FFCP PHASE2:Hg19::chr4:145567391..145567425,+#_09f6481be00b0c43c1575d002d225ef4 | p4@HHIP |
| 6.38e-40 | FFCP PHASE2:Hg19::chr4:145567426..145567455,+#_996041e8679d6b6e60995a5bde82d194 | p5@HHIP |
| 6.38e-40 | FFCP PHASE1:Hg19::chr4:145567426..145567455,+#_996041e8679d6b6e60995a5bde82d194 | p5@HHIP |
| 1.71e-39 | FFCP PHASE2:Hg19::chr4:145566841..145566862,+#_e038df5ae2ef07c7126203e41aa2340f | p10@HHIP |
| 1.71e-39 | FFCP PHASE1:Hg19::chr4:145566841..145566862,+#_e038df5ae2ef07c7126203e41aa2340f | p10@HHIP |
| 8.82e-39 | FFCP PHASE1:Hg19::chr4:145567563..145567572,+#_d2a8134f853d99530994ee2242c9b02c | p8@HHIP |
| 8.82e-39 | FFCP PHASE2:Hg19::chr4:145567563..145567572,+#_d2a8134f853d99530994ee2242c9b02c | p8@HHIP |
| 9.53e-38 | FFCP PHASE2:Hg19::chr9:140172310..140172321,+#_edb04c9b8e25945c3c09a2e73e0763f9 | p4@C9orf167 |
| 9.53e-38 | FFCP PHASE1:Hg19::chr9:140172310..140172321,+#_edb04c9b8e25945c3c09a2e73e0763f9 | p4@C9orf167 |
| 1.66e-37 | FFCP PHASE2:Hg19::chr20:36793649..36793659,-#_cef92bac408837c6623443883e5d72bc | p2@TGM2 |
| 1.66e-37 | FFCP PHASE1:Hg19::chr20:36793649..36793659,-#_cef92bac408837c6623443883e5d72bc | p2@TGM2 |
| 1.7e-37 | FFCP PHASE1:Hg19::chr5:141060389..141060439,-#_b37fd78c0b513822d2f2a83f75392dc8 | p3@ARAP3 |
| 1.7e-37 | FFCP PHASE2:Hg19::chr5:141060389..141060439,-#_b37fd78c0b513822d2f2a83f75392dc8 | p3@ARAP3 |
| 2.65e-37 | FFCP PHASE2:Hg19::chr1:21606132..21606156,-#_5a13c1f11a604de7a5d80f95658cd6d1 | p9@ECE1 |
| 2.65e-37 | FFCP PHASE1:Hg19::chr1:21606132..21606156,-#_5a13c1f11a604de7a5d80f95658cd6d1 | p9@ECE1 |
| 4.85e-37 | FFCP PHASE2:Hg19::chr5:54281535..54281547,-#_bbc3a8122d1af3291c08872918d0689c | p2@ESM1 |
| 4.85e-37 | FFCP PHASE1:Hg19::chr5:54281535..54281547,-#_bbc3a8122d1af3291c08872918d0689c | p2@ESM1 |
| 5.04e-37 | FFCP PHASE2:Hg19::chr3:149258838..149258848,-#_b2023c8d298fee9650bf9dea8777ba55 | p24@WWTR1 |
| 5.04e-37 | FFCP PHASE1:Hg19::chr3:149258838..149258848,-#_b2023c8d298fee9650bf9dea8777ba55 | p24@WWTR1 |
| 7.31e-37 | FFCP PHASE1:Hg19::chr14:63671393..63671437,+#_c12a75ded1bcb85291f2c606e2eed032 | p2@RHOJ |
| 7.31e-37 | FFCP PHASE2:Hg19::chr14:63671393..63671437,+#_c12a75ded1bcb85291f2c606e2eed032 | p2@RHOJ |
| 1.08e-36 | FFCP PHASE1:Hg19::chr1:153581416..153581458,-#_2f8da64615069469ee719bcbc0f2eb05 | p4@S100A16 |
| 1.08e-36 | FFCP PHASE2:Hg19::chr1:153581416..153581458,-#_2f8da64615069469ee719bcbc0f2eb05 | p4@S100A16 |
| 1.96e-36 | FFCP PHASE2:Hg19::chr11:86649508..86649546,-#_1682f415210a7b39e1e51e37441a48a7 | p@chr11:86649508..86649546, - |
| 1.96e-36 | FFCP PHASE1:Hg19::chr11:86649508..86649546,-#_1682f415210a7b39e1e51e37441a48a7 | p@chr11:86649508..86649546, - |
| 2.31e-36 | FFCP PHASE1:Hg19::chr6:153019023..153019043,+#_27acff20429c79e552cece31e19668a6 | p2@MYCT1 |
| 2.31e-36 | FFCP PHASE2:Hg19::chr6:153019023..153019043,+#_27acff20429c79e552cece31e19668a6 | p2@MYCT1 |
| 3.32e-36 | FFCP PHASE2:Hg19::chr7:93551017..93551029,+#_6881dfe572980326df2f9a829e3ca55e | p7@GNG11 |
| 3.32e-36 | FFCP PHASE1:Hg19::chr7:93551017..93551029,+#_6881dfe572980326df2f9a829e3ca55e | p7@GNG11 |
| 3.53e-36 | FFCP PHASE1:Hg19::chr22:21138313..21138336,+#_8ea19c4b1442e8ba2c4087c9512591c7 | p@chr22:21138313..21138336, + |
| 3.53e-36 | FFCP PHASE2:Hg19::chr22:21138313..21138336,+#_8ea19c4b1442e8ba2c4087c9512591c7 | p@chr22:21138313..21138336, + |
| 4.83e-36 | FFCP PHASE1:Mm9::chr14:63989446..63989459,+#_692e3ed80c0563f34329c07778ae579c | p@chr14:63989446..63989459, + |
| 4.83e-36 | FFCP PHASE2:Mm9::chr14:63989446..63989459,+#_692e3ed80c0563f34329c07778ae579c | p@chr14:63989446..63989459, + |
| 8.11e-36 | FFCP PHASE1:Hg19::chr5:54281512..54281517,-#_fed52e7845d0725665b49a16e2f2853e | p4@ESM1 |
| 8.11e-36 | FFCP PHASE2:Hg19::chr5:54281512..54281517,-#_fed52e7845d0725665b49a16e2f2853e | p4@ESM1 |
| 8.77e-36 | FFCP PHASE2:Hg19::chr20:36793663..36793735,-#_ec2503678ac3d3956b9f3ef99f67ba97 | p1@TGM2 |
| 8.77e-36 | FFCP PHASE1:Hg19::chr20:36793663..36793735,-#_ec2503678ac3d3956b9f3ef99f67ba97 | p1@TGM2 |
| 9.74e-36 | FFCP PHASE1:Hg19::chr11:102668200..102668228,-#_58c73d33db0d6874d2beb7f6a8bf7441 | p4@MMP1 |
| 9.74e-36 | FFCP PHASE2:Hg19::chr11:102668200..102668228,-#_58c73d33db0d6874d2beb7f6a8bf7441 | p4@MMP1 |
| 1.25e-35 | FFCP PHASE2:Hg19::chr7:100771879..100771926,-#_c89247b789c8448939b132fdab011743 | p@chr7:100771879..100771926, - |
| 1.25e-35 | FFCP PHASE1:Hg19::chr7:100771879..100771926,-#_c89247b789c8448939b132fdab011743 | p@chr7:100771879..100771926, - |
| 2.08e-35 | FFCP PHASE2:Mm9::chr13:30437397..30437427,+#_5278a283befb1e6f89cd76c043c03d8e | p@chr13:30437397..30437427, + |
| 2.08e-35 | FFCP PHASE1:Mm9::chr13:30437397..30437427,+#_5278a283befb1e6f89cd76c043c03d8e | p@chr13:30437397..30437427, + |
| 2.57e-35 | FFCP PHASE2:Hg19::chr7:100771725..100771774,+#_5f06cb1e0eed6d29a666c7b904ed9ca6 | p7@SERPINE1 |
| 2.57e-35 | FFCP PHASE1:Hg19::chr7:100771725..100771774,+#_5f06cb1e0eed6d29a666c7b904ed9ca6 | p7@SERPINE1 |
| 2.76e-35 | FFCP PHASE1:Hg19::chr18:47088419..47088437,+#_cfd4c8f557c23d3bf5bdf38e93be232d | p1@LIPG |
| 2.76e-35 | FFCP PHASE2:Hg19::chr18:47088419..47088437,+#_cfd4c8f557c23d3bf5bdf38e93be232d | p1@LIPG |
| 3.8e-35 | FFCP PHASE2:Hg19::chr11:102667477..102667490,-#_f27b2241979949f42b6202130bfe0bde | p@chr11:102667477..102667490, - |
| 3.8e-35 | FFCP PHASE1:Hg19::chr11:102667477..102667490,-#_f27b2241979949f42b6202130bfe0bde | p@chr11:102667477..102667490, - |
| 4.82e-35 | FFCP PHASE2:Mm9::chr6:87378980..87378994,+#_ee6ac9b42be5ee075534aa13481c2f2e | p1@Bmp10 |
| 4.82e-35 | FFCP PHASE1:Mm9::chr6:87378980..87378994,+#_ee6ac9b42be5ee075534aa13481c2f2e | p1@Bmp10 |
| 5.87e-35 | FFCP PHASE2:Hg19::chr4:145567356..145567368,+#_024a8fdfe88a798e3f311c9ae7befc8e | p7@HHIP |
| 5.87e-35 | FFCP PHASE1:Hg19::chr4:145567356..145567368,+#_024a8fdfe88a798e3f311c9ae7befc8e | p7@HHIP |
| 9.97e-35 | FFCP PHASE1:Hg19::chr6:112575917..112575931,-#_7e3783a1e2e5081cd8c57ae14d3cf565 | p4@LAMA4 |
| 9.97e-35 | FFCP PHASE2:Hg19::chr6:112575917..112575931,-#_7e3783a1e2e5081cd8c57ae14d3cf565 | p4@LAMA4 |
| 1.43e-34 | FFCP PHASE1:Hg19::chr4:7846444..7846449,-#_60eb5e321f7a9746ff34a33ae8dbb55d | p@chr4:7846444..7846449, - |
| 1.43e-34 | FFCP PHASE2:Hg19::chr4:7846444..7846449,-#_60eb5e321f7a9746ff34a33ae8dbb55d | p@chr4:7846444..7846449, - |
| 1.7e-34 | FFCP PHASE2:Hg19::chr1:21671968..21672009,-#_c5850ed7a5b34493e03cffdb26d8e6ee | p1@ECE1 |
| 1.7e-34 | FFCP PHASE1:Hg19::chr1:21671968..21672009,-#_c5850ed7a5b34493e03cffdb26d8e6ee | p1@ECE1 |
| 2.16e-34 | FFCP PHASE1:Hg19::chr11:128563283..128563297,-#_69432ad4aa5dfd3cd854750ef8f78ac1 | p@chr11:128563283..128563297, - |
| 2.16e-34 | FFCP PHASE2:Hg19::chr11:128563283..128563297,-#_69432ad4aa5dfd3cd854750ef8f78ac1 | p@chr11:128563283..128563297, - |
| 2.21e-34 | FFCP PHASE1:Hg19::chr7:100773780..100773795,+#_04224f19202e051c73f4998142814861 | p@chr7:100773780..100773795, + |
| 2.21e-34 | FFCP PHASE2:Hg19::chr7:100773780..100773795,+#_04224f19202e051c73f4998142814861 | p@chr7:100773780..100773795, + |
