UBERON:0003102: Difference between revisions
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|name=surface structure | |name=surface structure | ||
|namespace= | |namespace= | ||
|def="Organism subdivision that is the collection of anatomical structures on the body surface[ZFA]." [https://github.com/cmungall/uberon/issues/24, | |def="Organism subdivision that is the collection of anatomical structures on the body surface[ZFA]." [https://github.com/cmungall/uberon/issues/24, VSAO:0000001, Wikipedia:Surface_structure, ZFA:0000292] | ||
|xref=AAO:0010337;;AEO:0000010;;EHDAA2:0003010;;TAO:0000292;; | |xref=AAO:0010337;;AEO:0000010;;EHDAA2:0003010;;TAO:0000292;;VSAO:0000001;;XAO:0003028;;ZFA:0000292 | ||
|is_a=UBERON: | |is_a=UBERON:0000061 | ||
|synonym="anatomical surface feature" EXACT [EHDAA2:0003010] | |synonym="anatomical surface feature" EXACT [EHDAA2:0003010] | ||
|comment= | |comment= | ||
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|obo_creation_date= | |obo_creation_date= | ||
|subset=uberon_slim;;vertebrate_core | |subset=uberon_slim;;vertebrate_core | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
| Line 20: | Line 19: | ||
|located_in= | |located_in= | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Organism subdivision that is the collection of anatomical structures on the body surface.[AAO]" xsd:string;;UBPROP:0000001 "Organism subdivision which is the collection of anatomical structures on the body surface.[TAO]" xsd:string;;UBPROP:0000001 "Organism subdivision which is the collection of anatomical structures on the body surface.[VSAO]" xsd:string | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 17:03, 26 June 2012
| Name: | surface structure | ||
|---|---|---|---|
| Definition: | "Organism subdivision that is the collection of anatomical structures on the body surface[ZFA]." VSAO:0000001, Wikipedia:Surface_structure, ZFA:0000292 | ||
| Xrefs: |
| ||
| Synonyms: | "anatomical surface feature" EXACT [EHDAA2:0003010] | ||
| Alt_id: | UBERON:XAO_0003028-ZFA_0000292 | ||
| Subset: |
uberon_slim vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000061(anatomical structure) |
|---|
Children
| is a: | UBERON:0000931 (proctodeum),UBERON:0000964 (cornea),UBERON:0002199 (integument),UBERON:0004357 (paired limb/fin bud),UBERON:0007376 (outer epithelium),UBERON:0010188 (protuberance),UBERON:0010409 (eye surface),UBERON:3000961 (external integument structure) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10065-101I2 (skin, fetal, donor1)
- 10074-102A2 (skin, adult, donor1)
- 10233-103I8 (chicken leg buds, day03 (HH20))
- 10273-104E3
- 10283-104F4
- 10284-104F5
- 10285-104F6
- 10286-104F7 (Skin - palm, donor1)
- 10287-104F8
- 10288-104F9 (tongue epidermis (fungiform papillae), donor1)
... further results Mouse (Mus musculus)
- 10065-101I2 (skin, fetal, donor1)
- 10074-102A2 (skin, adult, donor1)
- 10233-103I8 (chicken leg buds, day03 (HH20))
- 10273-104E3
- 10283-104F4
- 10284-104F5
- 10285-104F6
- 10286-104F7 (Skin - palm, donor1)
- 10287-104F8
- 10288-104F9 (tongue epidermis (fungiform papillae), donor1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003102 (surface structure), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 8.9e-36 | FFCP PHASE1:Mm9::chr18:20273411..20273416,-#_a30a719ea36bb5046279110e48697a8d | p10@Dsc1 |
| 8.9e-36 | FFCP PHASE2:Mm9::chr18:20273411..20273416,-#_a30a719ea36bb5046279110e48697a8d | p10@Dsc1 |
| 8.9e-36 | FFCP PHASE1:Mm9::chr15:101540268..101540287,-#_a30a719ea36bb5046279110e48697a8d | p@chr15:101540268..101540287, - |
| 8.9e-36 | FFCP PHASE2:Mm9::chr15:101540268..101540287,-#_a30a719ea36bb5046279110e48697a8d | p@chr15:101540268..101540287, - |
| 1.75e-35 | FFCP PHASE2:Mm9::chr9:43128599..43128619,+#_e2be8c61b93946473bcabb5dc300df9b | p@chr9:43128599..43128619, + |
| 1.75e-35 | FFCP PHASE1:Mm9::chr2:9274095..9274107,+#_e2be8c61b93946473bcabb5dc300df9b | p2@ENSMUST00000144870, p2@uc008iha.1, p2@uc008ihb.1 |
| 1.75e-35 | FFCP PHASE2:Mm9::chr2:9274095..9274107,+#_e2be8c61b93946473bcabb5dc300df9b | p2@ENSMUST00000144870, p2@uc008iha.1, p2@uc008ihb.1 |
| 1.75e-35 | FFCP PHASE2:Mm9::chr2:120911571..120911582,-#_e2be8c61b93946473bcabb5dc300df9b | p3@Tgm5 |
| 1.75e-35 | FFCP PHASE1:Mm9::chr9:43128599..43128619,+#_e2be8c61b93946473bcabb5dc300df9b | p@chr9:43128599..43128619, + |
| 1.75e-35 | FFCP PHASE1:Mm9::chr2:120911571..120911582,-#_e2be8c61b93946473bcabb5dc300df9b | p3@Tgm5 |
| 3.5e-34 | FFCP PHASE2:Mm9::chr15:37162850..37162864,-#_4b63ea28dd621e0386682840497a48f2 | p2@ENSMUST00000159411, p3@uc011zsf.1 |
| 3.5e-34 | FFCP PHASE1:Mm9::chr15:37162850..37162864,-#_4b63ea28dd621e0386682840497a48f2 | p2@ENSMUST00000159411, p3@uc011zsf.1 |
| 3.26e-33 | FFCP PHASE1:Mm9::chrX:141783475..141783487,-#_12eda6836b804fdf3f1cd11aa4bd9d27 | p2@Lhfpl1 |
| 3.26e-33 | FFCP PHASE2:Mm9::chrX:141783475..141783487,-#_12eda6836b804fdf3f1cd11aa4bd9d27 | p2@Lhfpl1 |
| 3.78e-32 | FFCP PHASE2:Hg19::chr17:78808278..78808309,-#_be8c2d82d5728480401c77a791e28387 | p@chr17:78808278..78808309, - |
| 3.78e-32 | FFCP PHASE1:Hg19::chr17:78808278..78808309,-#_be8c2d82d5728480401c77a791e28387 | p@chr17:78808278..78808309, - |
| 5.65e-32 | FFCP PHASE2:Mm9::chr12:113969330..113969333,+#_848b2bffabc20576fba7d3f357b602bf | p@chr12:113969330..113969333, + |
| 5.65e-32 | FFCP PHASE1:Mm9::chr9:43119231..43119242,+#_848b2bffabc20576fba7d3f357b602bf | p@chr9:43119231..43119242, + |
| 5.65e-32 | FFCP PHASE1:Mm9::chr12:113969330..113969333,+#_848b2bffabc20576fba7d3f357b602bf | p@chr12:113969330..113969333, + |
| 5.65e-32 | FFCP PHASE2:Mm9::chr9:43119231..43119242,+#_848b2bffabc20576fba7d3f357b602bf | p@chr9:43119231..43119242, + |
| 6.14e-32 | FFCP PHASE2:Mm9::chr8:95425268..95425279,+#_c44cf0b54248633bec836f1b69da1bb7 | p4@Capns2 |
| 6.14e-32 | FFCP PHASE1:Mm9::chr8:95425268..95425279,+#_c44cf0b54248633bec836f1b69da1bb7 | p4@Capns2 |
| 7.26e-32 | FFCP PHASE1:Mm9::chr2:74505324..74505330,+#_92badfa7917d14339d5ccc0c479114be | p@chr2:74505324..74505330, + |
| 7.26e-32 | FFCP PHASE2:Mm9::chr2:74505324..74505330,+#_92badfa7917d14339d5ccc0c479114be | p@chr2:74505324..74505330, + |
| 8.57e-32 | FFCP PHASE2:Mm9::chr7:73888522..73888532,+#_dad0b8e74f626a76eba9c8c78ee6e84b | p1@Lass3 |
| 8.57e-32 | FFCP PHASE1:Mm9::chr7:73888522..73888532,+#_dad0b8e74f626a76eba9c8c78ee6e84b | p1@Lass3 |
| 1.1e-31 | FFCP PHASE1:Mm9::chr9:14467432..14467450,-#_dac88e30f3ca7fcf0578e8fcc120a249 | p@chr9:14467432..14467450, - |
| 1.1e-31 | FFCP PHASE2:Mm9::chr9:14467432..14467450,-#_dac88e30f3ca7fcf0578e8fcc120a249 | p@chr9:14467432..14467450, - |
| 1.11e-31 | FFCP PHASE2:Mm9::chr9:31923625..31923634,+#_7b04b43a06e4f6ea38f622aed7a703a7 | p11@Arhgap32 |
| 1.11e-31 | FFCP PHASE2:Mm9::chr7:148264069..148264080,+#_7b04b43a06e4f6ea38f622aed7a703a7 | p9@Pkp3 |
| 1.11e-31 | FFCP PHASE1:Mm9::chr7:148264069..148264080,+#_7b04b43a06e4f6ea38f622aed7a703a7 | p9@Pkp3 |
| 1.11e-31 | FFCP PHASE1:Mm9::chr9:31923625..31923634,+#_7b04b43a06e4f6ea38f622aed7a703a7 | p11@Arhgap32 |
| 1.29e-31 | FFCP PHASE2:Mm9::chr15:101538012..101538024,-#_2e0c0a19803d517ac5a65e6ad5c97d07 | p@chr15:101538012..101538024, - |
| 1.29e-31 | FFCP PHASE1:Mm9::chr15:101538012..101538024,-#_2e0c0a19803d517ac5a65e6ad5c97d07 | p@chr15:101538012..101538024, - |
| 5.26e-31 | FFCP PHASE1:Hg19::chr14:92413727..92413738,-#_54030ad243e94288553fa2c23ff0461b | p7@FBLN5 |
| 5.26e-31 | FFCP PHASE2:Hg19::chr14:92413727..92413738,-#_54030ad243e94288553fa2c23ff0461b | p7@FBLN5 |
| 5.4e-31 | FFCP PHASE2:Mm9::chr12:25257443..25257454,+#_cd28b777bf8a68444ead5881b3aed898 | p@chr12:25257443..25257454, + |
| 5.4e-31 | FFCP PHASE1:Mm9::chr12:25257443..25257454,+#_cd28b777bf8a68444ead5881b3aed898 | p@chr12:25257443..25257454, + |
| 1.37e-30 | FFCP PHASE2:Mm9::chr2:113245288..113245314,+#_21bfefc8aeedfc32d88d819771cd2a04 | p6@Fmn1 |
| 1.37e-30 | FFCP PHASE1:Mm9::chr2:113245288..113245314,+#_21bfefc8aeedfc32d88d819771cd2a04 | p6@Fmn1 |
| 1.96e-30 | FFCP PHASE2:Hg19::chr2:239756536..239756564,-#_5f3088ff48da3cb1e3c05aa0ce3c0515 | p1@BC143627 |
| 1.96e-30 | FFCP PHASE1:Hg19::chr2:239756536..239756564,-#_5f3088ff48da3cb1e3c05aa0ce3c0515 | p1@BC143627 |
| 2.98e-30 | FFCP PHASE2:Mm9::chr1:135128602..135128627,+#_6055864b1cc8ea1bb9c1f3aaf37c0ef3 | p@chr1:135128602..135128627, + |
| 2.98e-30 | FFCP PHASE1:Mm9::chr1:135128602..135128627,+#_6055864b1cc8ea1bb9c1f3aaf37c0ef3 | p@chr1:135128602..135128627, + |
| 6.35e-30 | FFCP PHASE1:Hg19::chr6:106959780..106959802,+#_c91677a27ce1fbe6653d7f6823e55500 | p7@AIM1 |
| 6.35e-30 | FFCP PHASE2:Hg19::chr6:106959780..106959802,+#_c91677a27ce1fbe6653d7f6823e55500 | p7@AIM1 |
| 6.59e-30 | FFCP PHASE1:Mm9::chr11:101031641..101031648,-#_3d009c09e3b8d0c9c9a4fd1f5d6567e1 | p6@Plekhh3 |
| 6.59e-30 | FFCP PHASE2:Mm9::chr11:101031641..101031648,-#_3d009c09e3b8d0c9c9a4fd1f5d6567e1 | p6@Plekhh3 |
| 8.97e-30 | FFCP PHASE2:Hg19::chr6:106959718..106959736,+#_54ad17e272462d3ed1add74907c154e3 | p11@AIM1 |
| 8.97e-30 | FFCP PHASE1:Hg19::chr6:106959718..106959736,+#_54ad17e272462d3ed1add74907c154e3 | p11@AIM1 |
| 1.53e-29 | FFCP PHASE1:Mm9::chr10:8747093..8747133,-#_2ee649ac458eb9d73be3ec4e7845cbc3 | p@chr10:8747093..8747133, - |
| 1.53e-29 | FFCP PHASE2:Mm9::chr10:8747093..8747133,-#_2ee649ac458eb9d73be3ec4e7845cbc3 | p@chr10:8747093..8747133, - |
| 1.64e-29 | FFCP PHASE1:Mm9::chr17:42829251..42829271,-#_c87bcbb75619bb266622845de12d3824 | p3@Gpr115 |
| 1.64e-29 | FFCP PHASE2:Mm9::chr17:42829251..42829271,-#_c87bcbb75619bb266622845de12d3824 | p3@Gpr115 |
| 2.31e-29 | FFCP PHASE2:Hg19::chr13:45289884..45289918,-#_d1bca99c7934192b03cf751f2c9cf02c | p@chr13:45289884..45289918, - |
| 2.31e-29 | FFCP PHASE1:Hg19::chr13:45289884..45289918,-#_d1bca99c7934192b03cf751f2c9cf02c | p@chr13:45289884..45289918, - |
| 4.21e-29 | FFCP PHASE1:Mm9::chr15:102552581..102552593,-#_1ea448627fb9e8c61534ad73e6e73b6e | p3@Calcoco1 |
| 4.21e-29 | FFCP PHASE1:Mm9::chr17:72130582..72130593,+#_1ea448627fb9e8c61534ad73e6e73b6e | p4@Clip4 |
| 4.21e-29 | FFCP PHASE2:Mm9::chr17:72130582..72130593,+#_1ea448627fb9e8c61534ad73e6e73b6e | p4@Clip4 |
| 4.21e-29 | FFCP PHASE2:Mm9::chr15:102552581..102552593,-#_1ea448627fb9e8c61534ad73e6e73b6e | p3@Calcoco1 |
| 4.54e-29 | FFCP PHASE1:Mm9::chr3:99044251..99044260,+#_3352e06cbbeed7b6672832e387baf59a | p8@Tbx15 |
| 4.54e-29 | FFCP PHASE2:Mm9::chr3:99044251..99044260,+#_3352e06cbbeed7b6672832e387baf59a | p8@Tbx15 |
| 4.9e-29 | FFCP PHASE1:Mm9::chr2:120911469..120911480,-#_212e6025f3fe4ffe85eb09585cfdd6b8 | p2@Tgm5 |
| 4.9e-29 | FFCP PHASE2:Mm9::chr2:120911469..120911480,-#_212e6025f3fe4ffe85eb09585cfdd6b8 | p2@Tgm5 |
| 5.71e-29 | FFCP PHASE1:Mm9::chr11:36246385..36246397,-#_923975b88d09054f50e53a6fe7005050 | p@chr11:36246385..36246397, - |
| 5.71e-29 | FFCP PHASE2:Mm9::chr11:36246385..36246397,-#_923975b88d09054f50e53a6fe7005050 | p@chr11:36246385..36246397, - |
| 6.65e-29 | FFCP PHASE2:Mm9::chr7:134623366..134623379,+#_ea6d285179b8743dfe1b26621d07c6c4 | p@chr7:134623366..134623379, + |
| 6.65e-29 | FFCP PHASE1:Mm9::chr7:134623366..134623379,+#_ea6d285179b8743dfe1b26621d07c6c4 | p@chr7:134623366..134623379, + |
| 8.35e-29 | FFCP PHASE2:Mm9::chr1:182312336..182312359,+#_76b0cbedff74320cbeda3c534fe79091 | p@chr1:182312336..182312359, + |
| 8.35e-29 | FFCP PHASE1:Mm9::chr1:182312336..182312359,+#_76b0cbedff74320cbeda3c534fe79091 | p@chr1:182312336..182312359, + |
| 3.38e-28 | FFCP PHASE1:Mm9::chr19:47766518..47766523,-#_e28ce588b2793a3722c1744a76ae7f21 | p6@Col17a1 |
| 3.38e-28 | FFCP PHASE1:Mm9::chr14:76354818..76354823,+#_e28ce588b2793a3722c1744a76ae7f21 | p2@Kctd4 |
| 3.38e-28 | FFCP PHASE2:Mm9::chr14:76354818..76354823,+#_e28ce588b2793a3722c1744a76ae7f21 | p2@Kctd4 |
| 3.38e-28 | FFCP PHASE2:Mm9::chr19:47766518..47766523,-#_e28ce588b2793a3722c1744a76ae7f21 | p6@Col17a1 |
| 3.67e-28 | FFCP PHASE1:Mm9::chr11:68702096..68702107,+#_7e209a1c7a6013a4ebea0da79ce35a3f | p3@Rnf222 |
| 3.67e-28 | FFCP PHASE2:Mm9::chr11:68702096..68702107,+#_7e209a1c7a6013a4ebea0da79ce35a3f | p3@Rnf222 |
| 3.67e-28 | FFCP PHASE1:Mm9::chr19:47755977..47755988,-#_7e209a1c7a6013a4ebea0da79ce35a3f | p@chr19:47755977..47755988, - |
| 3.67e-28 | FFCP PHASE2:Mm9::chr19:47755977..47755988,-#_7e209a1c7a6013a4ebea0da79ce35a3f | p@chr19:47755977..47755988, - |
| 3.85e-28 | FFCP PHASE1:Hg19::chr4:77560669..77560712,+#_64c371a0011f8eda78493320128d2829 | p@chr4:77560669..77560712, + |
| 3.85e-28 | FFCP PHASE2:Hg19::chr4:77560669..77560712,+#_64c371a0011f8eda78493320128d2829 | p@chr4:77560669..77560712, + |
| 3.99e-28 | FFCP PHASE1:Mm9::chr13:56710594..56710618,+#_09987ab994f4e8903520bb85a7fb0230 | p5@Tgfbi |
| 3.99e-28 | FFCP PHASE1:Mm9::chr13:38241368..38241382,+#_09987ab994f4e8903520bb85a7fb0230 | p@chr13:38241368..38241382, + |
| 3.99e-28 | FFCP PHASE2:Mm9::chr13:38241368..38241382,+#_09987ab994f4e8903520bb85a7fb0230 | p@chr13:38241368..38241382, + |
| 3.99e-28 | FFCP PHASE2:Mm9::chr13:56710594..56710618,+#_09987ab994f4e8903520bb85a7fb0230 | p5@Tgfbi |
| 4.72e-28 | FFCP PHASE2:Mm9::chr15:74615291..74615309,-#_53ae202863bd8346f1639051e14fb584 | p@chr15:74615291..74615309, - |
| 4.72e-28 | FFCP PHASE1:Mm9::chr15:74615291..74615309,-#_53ae202863bd8346f1639051e14fb584 | p@chr15:74615291..74615309, - |
| 6.4e-28 | FFCP PHASE1:Hg19::chr6:106959806..106959835,+#_57314e9caf70c8e51913a799ac5d1671 | p13@AIM1 |
| 6.4e-28 | FFCP PHASE2:Hg19::chr6:106959806..106959835,+#_57314e9caf70c8e51913a799ac5d1671 | p13@AIM1 |
| 6.73e-28 | FFCP PHASE2:Mm9::chr1:133646958..133646963,+#_a5f783eb3b81e626435f42a37cb26ab6 | p4@Slc26a9 |
| 6.73e-28 | FFCP PHASE1:Mm9::chr16:25862430..25862438,+#_a5f783eb3b81e626435f42a37cb26ab6 | p@chr16:25862430..25862438, + |
| 6.73e-28 | FFCP PHASE2:Mm9::chr4:3946815..3946822,-#_a5f783eb3b81e626435f42a37cb26ab6 | p9@Sdr16c5 |
| 6.73e-28 | FFCP PHASE2:Mm9::chrX:109811959..109811982,-#_a5f783eb3b81e626435f42a37cb26ab6 | p@chrX:109811959..109811982, - |
| 6.73e-28 | FFCP PHASE2:Mm9::chr19:5808574..5808583,+#_a5f783eb3b81e626435f42a37cb26ab6 | p@chr19:5808574..5808583, + |
| 6.73e-28 | FFCP PHASE1:Mm9::chr4:57351873..57351881,-#_a5f783eb3b81e626435f42a37cb26ab6 | p@chr4:57351873..57351881, - |
| 6.73e-28 | FFCP PHASE2:Mm9::chr8:98013921..98013958,-#_a5f783eb3b81e626435f42a37cb26ab6 | p@chr8:98013921..98013958, - |
| 6.73e-28 | FFCP PHASE1:Mm9::chr4:3946815..3946822,-#_a5f783eb3b81e626435f42a37cb26ab6 | p9@Sdr16c5 |
| 6.73e-28 | FFCP PHASE1:Mm9::chr19:5808574..5808583,+#_a5f783eb3b81e626435f42a37cb26ab6 | p@chr19:5808574..5808583, + |
| 6.73e-28 | FFCP PHASE1:Mm9::chrX:109811959..109811982,-#_a5f783eb3b81e626435f42a37cb26ab6 | p@chrX:109811959..109811982, - |
| 6.73e-28 | FFCP PHASE1:Mm9::chr12:105290936..105290965,+#_a5f783eb3b81e626435f42a37cb26ab6 | p@chr12:105290936..105290965, + |
| 6.73e-28 | FFCP PHASE2:Mm9::chr4:57351873..57351881,-#_a5f783eb3b81e626435f42a37cb26ab6 | p@chr4:57351873..57351881, - |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Organism subdivision that is the collection of anatomical structures on the body surface.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "Organism subdivision which is the collection of anatomical structures on the body surface.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "Organism subdivision which is the collection of anatomical structures on the body surface.[VSAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
