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|name=ear vesicle
|name=ear vesicle
|namespace=
|namespace=
|def="The saccular invagination of ectoderm from which the vertebrate inner ear develops[BTO]. Epithelial sac present beside the fifth rhombomere; forms the semicircular canals dorsally and the otolith organs ventrally, and houses the acoustico-vestibular sensory epithelia (maculae) of hair cells[ZFA]. epithelial sac of invaginated ectoderm formed from the otic placode that gives rise to the structures of the inner ear[MP]" [BTO:0002661, MP:0009806, Wikipedia:Auditory_vesicle, ZFIN:curator]
|def="The saccular invagination of ectoderm from which the vertebrate inner ear develops[BTO]. Epithelial sac present beside the fifth rhombomere; forms the semicircular canals dorsally and the otolith organs ventrally, and houses the acoustico-vestibular sensory epithelia (maculae) of hair cells[ZFA]. epithelial sac of invaginated ectoderm formed from the otic placode that gives rise to the structures of the inner ear[MP]" [BTO:0002661, MP:0009806, Wikipedia:Otic_vesicle, ZFIN:curator]
|xref=AAO:0011080;;BTO:0002661;;EHDAA2:0001342;;EMAPA:16669;;http://upload.wikimedia.org/wikipedia/commons/thumb/2/2d/Gray40.png/200px-Gray40.png;;ncithesaurus:Otic_Vesicle;;SCTID:308792006;;VHOG:0001148;;XAO:0000006;;ZFA:0000051
|xref=AAO:0011080;;BTO:0002661;;EHDAA2:0001342;;EMAPA:16669;;http://upload.wikimedia.org/wikipedia/commons/2/2d/Gray40.png;;http://upload.wikimedia.org/wikipedia/commons/thumb/2/2d/Gray40.png/200px-Gray40.png;;ncithesaurus:Otic_Vesicle;;SCTID:308792006;;TAO:0000051;;VHOG:0001148;;XAO:0000006;;ZFA:0000051
|is_a=UBERON:0004121;;UBERON:0005085;;UBERON:0005291;;UBERON:0005423;;UBERON:0007497
|is_a=UBERON:0005085;;UBERON:0005291;;UBERON:0007497;;UBERON:0010314;;UBERON:0010371
|synonym="auditory vesicle" RELATED [BTO:0002661];;"otic vesicle" EXACT [];;"otocyst" RELATED [];;"OV" RELATED []
|synonym="auditory vesicle" RELATED [BTO:0002661];;"otic vesicle" EXACT [];;"otocyst" RELATED [];;"OV" RELATED []
|comment=
|comment=
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|obo_creation_date=
|obo_creation_date=
|subset=vertebrate_core
|subset=vertebrate_core
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=UBERON:0009123
|develops_from=
|has_quality=
|has_quality=
|located_in=
|located_in=
|part_of=UBERON:0000922;;UBERON:0000924
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Epithelial sac present beside the fifth rhombomere; forms the semicircular canals dorsally and the otolith organs ventrally, and houses the acoustico-vestibular sensory epithelia (maculae) of hair cells. Kimmel et al, 1995. (Also see Anatomical Atlas entry for ear by T. Whitfield.)[TAO]" xsd:string
|is_obsolete=
|is_obsolete=
|preceded_by=
|preceded_by=
}}
}}

Revision as of 17:02, 26 June 2012

Name:ear vesicle
Definition:"The saccular invagination of ectoderm from which the vertebrate inner ear develops[BTO]. Epithelial sac present beside the fifth rhombomere; forms the semicircular canals dorsally and the otolith organs ventrally, and houses the acoustico-vestibular sensory epithelia (maculae) of hair cells[ZFA]. epithelial sac of invaginated ectoderm formed from the otic placode that gives rise to the structures of the inner ear[MP]" [BTO:0002661, MP:0009806, Wikipedia:Otic_vesicle, ZFIN:curator]
Xrefs:
links:

AAO:0011080
BTO:0002661
EHDAA2:0001342
EMAPA:16669
[ Gray40.png Gray40.png]
[ 200px-Gray40.png 200px-Gray40.png]
ncithesaurus:Otic_Vesicle
SCTID:308792006
TAO:0000051
VHOG:0001148
XAO:0000006

ZFA:0000051
Synonyms: "auditory vesicle" RELATED [BTO:0002661]
"otic vesicle" EXACT []
"otocyst" RELATED []
"OV" RELATED []
Alt_id: UBERON:0004373
UBERON:XAO_0000006-ZFA_0000051
Subset: vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0005085(ectodermal placode),UBERON:0005291(embryonic tissue),UBERON:0007497(developing epithelial placode),UBERON:0010314(structure with developmental contribution from neural crest),UBERON:0010371(ecto-epithelium)



Children

develops from:UBERON:0001846 (internal ear),UBERON:0012175 (acoustico-facial VII-VIII ganglion complex)
part of:UBERON:0005641 (otocyst epithelium)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003051 (ear vesicle), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.87e-86FFCP PHASE1:Mm9::chr10:107349378..107349390,-#_75fc3970308be340c9f348f4c3017776p1@Otogl
1.87e-86FFCP PHASE2:Mm9::chr1:194818647..194818660,-#_75fc3970308be340c9f348f4c3017776p@chr1:194818647..194818660, -
1.87e-86FFCP PHASE1:Mm9::chr2:53464168..53464175,+#_75fc3970308be340c9f348f4c3017776p@chr2:53464168..53464175, +
1.87e-86FFCP PHASE2:Mm9::chr5:68423014..68423037,+#_75fc3970308be340c9f348f4c3017776p1@Grxcr1
1.87e-86FFCP PHASE1:Mm9::chr11:94371127..94371139,-#_75fc3970308be340c9f348f4c3017776p@chr11:94371127..94371139, -
1.87e-86FFCP PHASE2:Mm9::chr9:50968647..50968668,-#_75fc3970308be340c9f348f4c3017776p@chr9:50968647..50968668, -
1.87e-86FFCP PHASE1:Mm9::chr6:29428397..29428407,-#_75fc3970308be340c9f348f4c3017776p@chr6:29428397..29428407, -
1.87e-86FFCP PHASE1:Mm9::chr4:63079735..63079745,-#_75fc3970308be340c9f348f4c3017776p@chr4:63079735..63079745, -
1.87e-86FFCP PHASE1:Mm9::chr15:58022966..58022995,-#_75fc3970308be340c9f348f4c3017776p@chr15:58022966..58022995, -
1.87e-86FFCP PHASE1:Mm9::chr5:147854240..147854249,-#_75fc3970308be340c9f348f4c3017776p@chr5:147854240..147854249, -
1.87e-86FFCP PHASE2:Mm9::chr7:88068153..88068160,-#_75fc3970308be340c9f348f4c3017776p10@Sec11a
1.87e-86FFCP PHASE1:Mm9::chr18:42158627..42158630,-#_75fc3970308be340c9f348f4c3017776p@chr18:42158627..42158630, -
1.87e-86FFCP PHASE2:Mm9::chr5:30710455..30710464,-#_75fc3970308be340c9f348f4c3017776p9@Otof
1.87e-86FFCP PHASE1:Mm9::chr14:31283072..31283081,-#_75fc3970308be340c9f348f4c3017776p@chr14:31283072..31283081, -
1.87e-86FFCP PHASE2:Mm9::chr14:20649897..20649907,+#_75fc3970308be340c9f348f4c3017776p@chr14:20649897..20649907, +
1.87e-86FFCP PHASE2:Mm9::chr10:108316802..108316807,-#_75fc3970308be340c9f348f4c3017776p@chr10:108316802..108316807, -
1.87e-86FFCP PHASE1:Mm9::chr6:113251606..113251613,+#_75fc3970308be340c9f348f4c3017776p@chr6:113251606..113251613, +
1.87e-86FFCP PHASE1:Mm9::chr4:130461150..130461185,+#_75fc3970308be340c9f348f4c3017776p@chr4:130461150..130461185, +
1.87e-86FFCP PHASE2:Mm9::chr10:80806047..80806059,-#_75fc3970308be340c9f348f4c3017776p4@Gipc3
1.87e-86FFCP PHASE1:Mm9::chr17:13983095..13983100,+#_75fc3970308be340c9f348f4c3017776p@chr17:13983095..13983100, +
1.87e-86FFCP PHASE2:Mm9::chr9:92087926..92087938,+#_75fc3970308be340c9f348f4c3017776p2@Plscr5
1.87e-86FFCP PHASE1:Mm9::chr8:13425469..13425503,+#_75fc3970308be340c9f348f4c3017776p@chr8:13425469..13425503, +
1.87e-86FFCP PHASE2:Mm9::chr5:3909290..3909299,+#_75fc3970308be340c9f348f4c3017776p@chr5:3909290..3909299, +
1.87e-86FFCP PHASE1:Mm9::chr19:55255289..55255299,+#_75fc3970308be340c9f348f4c3017776p2@Tectb
1.87e-86FFCP PHASE1:Mm9::chr13:78257518..78257522,+#_75fc3970308be340c9f348f4c3017776p@chr13:78257518..78257522, +
1.87e-86FFCP PHASE1:Mm9::chr11:102123535..102123544,+#_75fc3970308be340c9f348f4c3017776p5@BC030867
1.87e-86FFCP PHASE1:Mm9::chr15:97806034..97806061,+#_75fc3970308be340c9f348f4c3017776p@chr15:97806034..97806061, +
1.87e-86FFCP PHASE2:Mm9::chr4:130461150..130461185,+#_75fc3970308be340c9f348f4c3017776p@chr4:130461150..130461185, +
1.87e-86FFCP PHASE2:Mm9::chr3:100724698..100724706,+#_75fc3970308be340c9f348f4c3017776p@chr3:100724698..100724706, +
1.87e-86FFCP PHASE2:Mm9::chr17:13983102..13983126,+#_75fc3970308be340c9f348f4c3017776p@chr17:13983102..13983126, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207852..42207876,-#_75fc3970308be340c9f348f4c3017776p2@Tecta
1.87e-86FFCP PHASE2:Mm9::chr6:30619378..30619412,-#_75fc3970308be340c9f348f4c3017776p11@Tsga14
1.87e-86FFCP PHASE1:Mm9::chr7:29733825..29733837,-#_75fc3970308be340c9f348f4c3017776p@chr7:29733825..29733837, -
1.87e-86FFCP PHASE1:Mm9::chr1:93235228..93235249,+#_75fc3970308be340c9f348f4c3017776p@chr1:93235228..93235249, +
1.87e-86FFCP PHASE2:Mm9::chr19:10536797..10536802,-#_75fc3970308be340c9f348f4c3017776p@chr19:10536797..10536802, -
1.87e-86FFCP PHASE2:Mm9::chr9:56208792..56208814,-#_75fc3970308be340c9f348f4c3017776p@chr9:56208792..56208814, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207887..42207960,-#_75fc3970308be340c9f348f4c3017776p1@Tecta
1.87e-86FFCP PHASE1:Mm9::chr15:85334335..85334353,+#_75fc3970308be340c9f348f4c3017776p@chr15:85334335..85334353, +
1.87e-86FFCP PHASE2:Mm9::chr1:172843813..172843834,-#_75fc3970308be340c9f348f4c3017776p@chr1:172843813..172843834, -
1.87e-86FFCP PHASE2:Mm9::chr3:69811606..69811616,+#_75fc3970308be340c9f348f4c3017776p2@Otol1
1.87e-86FFCP PHASE1:Mm9::chr5:28035962..28035983,+#_75fc3970308be340c9f348f4c3017776p@chr5:28035962..28035983, +
1.87e-86FFCP PHASE1:Mm9::chr4:101908153..101908163,+#_75fc3970308be340c9f348f4c3017776p@chr4:101908153..101908163, +
1.87e-86FFCP PHASE2:Mm9::chr3:35012425..35012439,+#_75fc3970308be340c9f348f4c3017776p@chr3:35012425..35012439, +
1.87e-86FFCP PHASE1:Mm9::chr9:42206730..42206739,-#_75fc3970308be340c9f348f4c3017776p@chr9:42206730..42206739, -
1.87e-86FFCP PHASE2:Mm9::chr4:115556989..115556997,+#_75fc3970308be340c9f348f4c3017776p1@Kncn
1.87e-86FFCP PHASE1:Mm9::chr1:63733478..63733491,-#_75fc3970308be340c9f348f4c3017776p1@Dytn
1.87e-86FFCP PHASE2:Mm9::chr9:42206745..42206774,-#_75fc3970308be340c9f348f4c3017776p@chr9:42206745..42206774, -
1.87e-86FFCP PHASE2:Mm9::chr19:55255206..55255223,+#_75fc3970308be340c9f348f4c3017776p1@Tectb
1.87e-86FFCP PHASE1:Mm9::chr10:81091447..81091464,+#_75fc3970308be340c9f348f4c3017776p9@Ankrd24
1.87e-86FFCP PHASE2:Mm9::chr3:106986057..106986062,+#_75fc3970308be340c9f348f4c3017776p1@Kcna10
1.87e-86FFCP PHASE1:Mm9::chr7:109052262..109052291,-#_75fc3970308be340c9f348f4c3017776p1@Tomt
1.87e-86FFCP PHASE1:Mm9::chr2:152453066..152453075,-#_75fc3970308be340c9f348f4c3017776p@chr2:152453066..152453075, -
1.87e-86FFCP PHASE2:Mm9::chr11:102123535..102123544,+#_75fc3970308be340c9f348f4c3017776p5@BC030867
1.87e-86FFCP PHASE1:Mm9::chr2:29935952..29935993,+#_75fc3970308be340c9f348f4c3017776p7@Pkn3
1.87e-86FFCP PHASE2:Mm9::chr4:151505798..151505818,-#_75fc3970308be340c9f348f4c3017776p21@Espn
1.87e-86FFCP PHASE2:Mm9::chr1:93218694..93218705,+#_75fc3970308be340c9f348f4c3017776p1@Espnl
1.87e-86FFCP PHASE2:Mm9::chr18:42158627..42158630,-#_75fc3970308be340c9f348f4c3017776p@chr18:42158627..42158630, -
1.87e-86FFCP PHASE1:Mm9::chr3:106986057..106986062,+#_75fc3970308be340c9f348f4c3017776p1@Kcna10
1.87e-86FFCP PHASE2:Mm9::chr13:78257491..78257498,+#_75fc3970308be340c9f348f4c3017776p@chr13:78257491..78257498, +
1.87e-86FFCP PHASE1:Mm9::chr6:86746562..86746579,-#_75fc3970308be340c9f348f4c3017776p@chr6:86746562..86746579, -
1.87e-86FFCP PHASE1:Mm9::chrX:154140781..154140788,+#_75fc3970308be340c9f348f4c3017776p@chrX:154140781..154140788, +
1.87e-86FFCP PHASE1:Mm9::chr3:69811606..69811616,+#_75fc3970308be340c9f348f4c3017776p2@Otol1
1.87e-86FFCP PHASE1:Mm9::chr10:107156949..107156956,-#_75fc3970308be340c9f348f4c3017776p3@Ptprq
1.87e-86FFCP PHASE1:Mm9::chr1:172843885..172843890,-#_75fc3970308be340c9f348f4c3017776p@chr1:172843885..172843890, -
1.87e-86FFCP PHASE2:Mm9::chr10:107349418..107349423,-#_75fc3970308be340c9f348f4c3017776p5@Otogl
1.87e-86FFCP PHASE2:Mm9::chr12:13508046..13508055,+#_75fc3970308be340c9f348f4c3017776p@chr12:13508046..13508055, +
1.87e-86FFCP PHASE2:Mm9::chr14:47293487..47293493,-#_75fc3970308be340c9f348f4c3017776p@chr14:47293487..47293493, -
1.87e-86FFCP PHASE1:Mm9::chr9:42208023..42208043,-#_75fc3970308be340c9f348f4c3017776p4@Tecta
1.87e-86FFCP PHASE2:Mm9::chr3:154693281..154693317,-#_75fc3970308be340c9f348f4c3017776p@chr3:154693281..154693317, -
1.87e-86FFCP PHASE1:Mm9::chr2:121206695..121206711,-#_75fc3970308be340c9f348f4c3017776p1@Strc
1.87e-86FFCP PHASE2:Mm9::chr9:42208142..42208157,-#_75fc3970308be340c9f348f4c3017776p10@Tecta
1.87e-86FFCP PHASE1:Mm9::chr5:3909290..3909299,+#_75fc3970308be340c9f348f4c3017776p@chr5:3909290..3909299, +
1.87e-86FFCP PHASE2:Mm9::chr4:63079735..63079745,-#_75fc3970308be340c9f348f4c3017776p@chr4:63079735..63079745, -
1.87e-86FFCP PHASE1:Mm9::chr4:115556939..115556945,+#_75fc3970308be340c9f348f4c3017776p4@Kncn
1.87e-86FFCP PHASE1:Mm9::chr9:42207697..42207705,-#_75fc3970308be340c9f348f4c3017776p@chr9:42207697..42207705, -
1.87e-86FFCP PHASE1:Mm9::chr7:27964761..27964768,+#_75fc3970308be340c9f348f4c3017776p@chr7:27964761..27964768, +
1.87e-86FFCP PHASE2:Mm9::chr17:31335903..31335921,-#_75fc3970308be340c9f348f4c3017776p2@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr6:86746562..86746579,-#_75fc3970308be340c9f348f4c3017776p@chr6:86746562..86746579, -
1.87e-86FFCP PHASE2:Mm9::chr15:58480061..58480066,+#_75fc3970308be340c9f348f4c3017776p5@Fer1l6
1.87e-86FFCP PHASE2:Mm9::chr9:42207777..42207789,-#_75fc3970308be340c9f348f4c3017776p7@Tecta
1.87e-86FFCP PHASE1:Mm9::chr3:154693281..154693317,-#_75fc3970308be340c9f348f4c3017776p@chr3:154693281..154693317, -
1.87e-86FFCP PHASE1:Mm9::chr13:43699188..43699216,+#_75fc3970308be340c9f348f4c3017776p@chr13:43699188..43699216, +
1.87e-86FFCP PHASE1:Mm9::chr7:109265277..109265288,-#_75fc3970308be340c9f348f4c3017776p4@Chrna10
1.87e-86FFCP PHASE1:Mm9::chr10:107349392..107349413,-#_75fc3970308be340c9f348f4c3017776p2@Otogl
1.87e-86FFCP PHASE1:Mm9::chr9:41495920..41495928,-#_75fc3970308be340c9f348f4c3017776p@chr9:41495920..41495928, -
1.87e-86FFCP PHASE2:Mm9::chr8:13414266..13414279,+#_75fc3970308be340c9f348f4c3017776p@chr8:13414266..13414279, +
1.87e-86FFCP PHASE1:Mm9::chr2:53464178..53464186,+#_75fc3970308be340c9f348f4c3017776p@chr2:53464178..53464186, +
1.87e-86FFCP PHASE2:Mm9::chr2:53464168..53464175,+#_75fc3970308be340c9f348f4c3017776p@chr2:53464168..53464175, +
1.87e-86FFCP PHASE2:Mm9::chr5:72652660..72652667,+#_75fc3970308be340c9f348f4c3017776p@chr5:72652660..72652667, +
1.87e-86FFCP PHASE1:Mm9::chr4:151505798..151505818,-#_75fc3970308be340c9f348f4c3017776p21@Espn
1.87e-86FFCP PHASE1:Mm9::chr10:80806020..80806031,-#_75fc3970308be340c9f348f4c3017776p3@Gipc3
1.87e-86FFCP PHASE2:Mm9::chr3:58626291..58626298,-#_75fc3970308be340c9f348f4c3017776p@chr3:58626291..58626298, -
1.87e-86FFCP PHASE1:Mm9::chr9:56208792..56208814,-#_75fc3970308be340c9f348f4c3017776p@chr9:56208792..56208814, -
1.87e-86FFCP PHASE1:Mm9::chr15:58480061..58480066,+#_75fc3970308be340c9f348f4c3017776p5@Fer1l6
1.87e-86FFCP PHASE2:Mm9::chr11:114603036..114603048,+#_75fc3970308be340c9f348f4c3017776p@chr11:114603036..114603048, +
1.87e-86FFCP PHASE1:Mm9::chr5:150945209..150945220,+#_75fc3970308be340c9f348f4c3017776p@chr5:150945209..150945220, +
1.87e-86FFCP PHASE2:Mm9::chr1:154246932..154246939,+#_75fc3970308be340c9f348f4c3017776p7@Glt25d2
1.87e-86FFCP PHASE1:Mm9::chr1:182528371..182528385,+#_75fc3970308be340c9f348f4c3017776p@chr1:182528371..182528385, +
1.87e-86FFCP PHASE1:Mm9::chr14:31283085..31283097,-#_75fc3970308be340c9f348f4c3017776p@chr14:31283085..31283097, -
1.87e-86FFCP PHASE1:Mm9::chr11:75421384..75421397,+#_75fc3970308be340c9f348f4c3017776p@chr11:75421384..75421397, +










Property "Property value" (as page type) with input value "UBPROP:0000001 "Epithelial sac present beside the fifth rhombomere; forms the semicircular canals dorsally and the otolith organs ventrally, and houses the acoustico-vestibular sensory epithelia (maculae) of hair cells. Kimmel et al, 1995. (Also see Anatomical Atlas entry for ear by T. Whitfield.)[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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