UBERON:0002316: Difference between revisions
From FANTOM5_SSTAR
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|def="Heterogeneous cluster of neurites in the brain and the spinal cord." [Wikipedia:White_matter] | |def="Heterogeneous cluster of neurites in the brain and the spinal cord." [Wikipedia:White_matter] | ||
|xref=AEO:0000139;;FMA:83929;;http://upload.wikimedia.org/wikipedia/commons/thumb/d/d2/Spinal_nerve.svg/200px-Spinal_nerve.svg.png;;MA:0001135;;ncithesaurus:White_Matter;;NIF_GrossAnatomy:Class_2;;OpenCyc:Mx4rwOAsDZwpEbGdrcN5Y29ycA;;ZFA:0001682 | |xref=AEO:0000139;;FMA:83929;;http://upload.wikimedia.org/wikipedia/commons/d/d7/Grey_matter_and_white_matter_-_very_high_mag.jpg;;http://upload.wikimedia.org/wikipedia/commons/thumb/d/d2/Spinal_nerve.svg/200px-Spinal_nerve.svg.png;;MA:0001135;;ncithesaurus:White_Matter;;NIF_GrossAnatomy:Class_2;;OpenCyc:Mx4rwOAsDZwpEbGdrcN5Y29ycA;;TAO:0000145;;TAO:0002142;;TAO:0002143;;ZFA:0001682 | ||
|is_a=UBERON:0000477;;UBERON:0004121 | |is_a=UBERON:0000477;;UBERON:0004121 | ||
|synonym="white matter of neuraxis" EXACT [FMA:83929];;"white substance" EXACT [] | |synonym="substantia alba" RELATED LATIN [Wikipedia:White_matter];;"white matter of neuraxis" EXACT [FMA:83929];;"white substance" EXACT [] | ||
|comment=This class was created automatically from a combination of ontologies | |comment=This class was created automatically from a combination of ontologies | ||
|alt_id=UBERON:FMA_83929-MA_0001135 | |alt_id=UBERON:FMA_83929-MA_0001135 | ||
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|obo_creation_date= | |obo_creation_date= | ||
|subset=uberon_slim;;vertebrate_core | |subset=uberon_slim;;vertebrate_core | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Multi-tissue structure comprised largely of myelinated axons.[TAO]" xsd:string | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 17:01, 26 June 2012
| Name: | white matter | ||
|---|---|---|---|
| Definition: | "Heterogeneous cluster of neurites in the brain and the spinal cord." [Wikipedia:White_matter] | ||
| Xrefs: |
| ||
| Synonyms: |
"substantia alba" RELATED LATIN [Wikipedia:White_matter] "white matter of neuraxis" EXACT [FMA:83929] "white substance" EXACT [] | ||
| Comments: | This class was created automatically from a combination of ontologies | ||
| Alt_id: | UBERON:FMA_83929-MA_0001135 | ||
| Subset: |
uberon_slim vertebrate_core |
200px-Spinal_nerve.svg.png]
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000477(anatomical cluster),UBERON:0004121(ectoderm-derived structure) |
|---|
Children
| is a: | UBERON:0003544 (brain white matter) |
|---|---|
| part of: | UBERON:0007702 (tract of brain) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10042-101F6 (corpus callosum, adult, pool1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002316 (white matter), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.42e-195 | FFCP PHASE1:Hg19::chr15:93827399..93827403,+#_1a93c31fc567e45f0646cde12c5cd4a8 | p@chr15:93827399..93827403, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr15:93827399..93827403,+#_1a93c31fc567e45f0646cde12c5cd4a8 | p@chr15:93827399..93827403, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr17:73689469..73689476,-#_1a93c31fc567e45f0646cde12c5cd4a8 | p@chr17:73689469..73689476, - |
| 5.42e-195 | FFCP PHASE2:Hg19::chr14:36462819..36462832,+#_1a93c31fc567e45f0646cde12c5cd4a8 | p@chr14:36462819..36462832, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr14:36462819..36462832,+#_1a93c31fc567e45f0646cde12c5cd4a8 | p@chr14:36462819..36462832, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr17:73689469..73689476,-#_1a93c31fc567e45f0646cde12c5cd4a8 | p@chr17:73689469..73689476, - |
| 5.42e-195 | FFCP PHASE2:Hg19::chr5:60927228..60927236,-#_1a93c31fc567e45f0646cde12c5cd4a8 | p3@BC032909, p3@BC032910 |
| 5.42e-195 | FFCP PHASE1:Hg19::chr5:60927228..60927236,-#_1a93c31fc567e45f0646cde12c5cd4a8 | p3@BC032909, p3@BC032910 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:232548018..232548022,-#_dc5393366f83dc734cadc22cd25c7319 | p@chr2:232548018..232548022, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr11:110248322..110248329,-#_dc5393366f83dc734cadc22cd25c7319 | p@chr11:110248322..110248329, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr14:33926303..33926307,-#_dc5393366f83dc734cadc22cd25c7319 | p@chr14:33926303..33926307, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr14:33926303..33926307,-#_dc5393366f83dc734cadc22cd25c7319 | p@chr14:33926303..33926307, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr12:78359873..78359882,+#_dc5393366f83dc734cadc22cd25c7319 | p41@NAV3 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr12:78359873..78359882,+#_dc5393366f83dc734cadc22cd25c7319 | p41@NAV3 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr11:110248322..110248329,-#_dc5393366f83dc734cadc22cd25c7319 | p@chr11:110248322..110248329, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:232548018..232548022,-#_dc5393366f83dc734cadc22cd25c7319 | p@chr2:232548018..232548022, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr19:35788742..35788752,+#_bb20359b6ca1dd422c0492d0d6bc330a | p@chr19:35788742..35788752, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr19:35788742..35788752,+#_bb20359b6ca1dd422c0492d0d6bc330a | p@chr19:35788742..35788752, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr3:15374659..15374696,-#_bb20359b6ca1dd422c0492d0d6bc330a | p10@SH3BP5 |
| 2.55e-98 | FFCP PHASE1:Hg19::chr3:15374659..15374696,-#_bb20359b6ca1dd422c0492d0d6bc330a | p10@SH3BP5 |
| 1.23e-66 | FFCP PHASE1:Hg19::chr7:124391226..124391235,-#_737825bdb78baf7d2024c0b749a810a9 | p@chr7:124391226..124391235, - |
| 1.23e-66 | FFCP PHASE2:Hg19::chr10:73479518..73479527,-#_737825bdb78baf7d2024c0b749a810a9 | p5@C10orf105 |
| 1.23e-66 | FFCP PHASE1:Hg19::chr12:78359680..78359686,+#_737825bdb78baf7d2024c0b749a810a9 | p32@NAV3 |
| 1.23e-66 | FFCP PHASE2:Hg19::chr12:78359680..78359686,+#_737825bdb78baf7d2024c0b749a810a9 | p32@NAV3 |
| 1.23e-66 | FFCP PHASE1:Hg19::chr17:72823919..72823924,-#_737825bdb78baf7d2024c0b749a810a9 | p@chr17:72823919..72823924, - |
| 1.23e-66 | FFCP PHASE2:Hg19::chr8:42037488..42037504,+#_737825bdb78baf7d2024c0b749a810a9 | p@chr8:42037488..42037504, + |
| 1.23e-66 | FFCP PHASE1:Hg19::chr8:42037488..42037504,+#_737825bdb78baf7d2024c0b749a810a9 | p@chr8:42037488..42037504, + |
| 1.23e-66 | FFCP PHASE1:Hg19::chr10:73479518..73479527,-#_737825bdb78baf7d2024c0b749a810a9 | p5@C10orf105 |
| 1.23e-66 | FFCP PHASE2:Hg19::chr7:124391226..124391235,-#_737825bdb78baf7d2024c0b749a810a9 | p@chr7:124391226..124391235, - |
| 1.23e-66 | FFCP PHASE2:Hg19::chr17:72823919..72823924,-#_737825bdb78baf7d2024c0b749a810a9 | p@chr17:72823919..72823924, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr10:61043452..61043467,-#_6c6a09313f0d665f0739ddab9e612ed3 | p16@FAM13C |
| 2.39e-66 | FFCP PHASE2:Hg19::chr10:25012236..25012245,-#_6c6a09313f0d665f0739ddab9e612ed3 | p24@ARHGAP21 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr6:163681762..163681767,+#_6c6a09313f0d665f0739ddab9e612ed3 | p@chr6:163681762..163681767, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr10:61043452..61043467,-#_6c6a09313f0d665f0739ddab9e612ed3 | p16@FAM13C |
| 2.39e-66 | FFCP PHASE1:Hg19::chr10:25012236..25012245,-#_6c6a09313f0d665f0739ddab9e612ed3 | p24@ARHGAP21 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr6:163681762..163681767,+#_6c6a09313f0d665f0739ddab9e612ed3 | p@chr6:163681762..163681767, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr5:35089799..35089804,-#_c8c7fd5d1cc4cab712fc1f984566fd30 | p20@PRLR |
| 4.66e-66 | FFCP PHASE1:Hg19::chr8:101522298..101522305,-#_c8c7fd5d1cc4cab712fc1f984566fd30 | p@chr8:101522298..101522305, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr7:129015806..129015815,+#_c8c7fd5d1cc4cab712fc1f984566fd30 | p@chr7:129015806..129015815, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr5:35089799..35089804,-#_c8c7fd5d1cc4cab712fc1f984566fd30 | p20@PRLR |
| 4.66e-66 | FFCP PHASE2:Hg19::chr5:35089832..35089839,-#_c8c7fd5d1cc4cab712fc1f984566fd30 | p26@PRLR |
| 4.66e-66 | FFCP PHASE2:Hg19::chr17:40120071..40120085,+#_c8c7fd5d1cc4cab712fc1f984566fd30 | p15@CNP |
| 4.66e-66 | FFCP PHASE2:Hg19::chr7:129012882..129012891,-#_c8c7fd5d1cc4cab712fc1f984566fd30 | p@chr7:129012882..129012891, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr5:35089832..35089839,-#_c8c7fd5d1cc4cab712fc1f984566fd30 | p26@PRLR |
| 4.66e-66 | FFCP PHASE1:Hg19::chr17:40120071..40120085,+#_c8c7fd5d1cc4cab712fc1f984566fd30 | p15@CNP |
| 4.66e-66 | FFCP PHASE1:Hg19::chr7:129015806..129015815,+#_c8c7fd5d1cc4cab712fc1f984566fd30 | p@chr7:129015806..129015815, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr4:174293011..174293022,-#_c8c7fd5d1cc4cab712fc1f984566fd30 | p@chr4:174293011..174293022, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr7:129012882..129012891,-#_c8c7fd5d1cc4cab712fc1f984566fd30 | p@chr7:129012882..129012891, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr4:645709..645712,+#_c8c7fd5d1cc4cab712fc1f984566fd30 | p15@PDE6B |
| 4.66e-66 | FFCP PHASE1:Hg19::chr13:99135698..99135706,+#_c8c7fd5d1cc4cab712fc1f984566fd30 | p@chr13:99135698..99135706, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr13:99135698..99135706,+#_c8c7fd5d1cc4cab712fc1f984566fd30 | p@chr13:99135698..99135706, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr14:91199850..91199861,-#_c8c7fd5d1cc4cab712fc1f984566fd30 | p@chr14:91199850..91199861, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr14:91199850..91199861,-#_c8c7fd5d1cc4cab712fc1f984566fd30 | p@chr14:91199850..91199861, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr4:174293011..174293022,-#_c8c7fd5d1cc4cab712fc1f984566fd30 | p@chr4:174293011..174293022, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr8:101522298..101522305,-#_c8c7fd5d1cc4cab712fc1f984566fd30 | p@chr8:101522298..101522305, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr4:645709..645712,+#_c8c7fd5d1cc4cab712fc1f984566fd30 | p15@PDE6B |
| 1.46e-50 | FFCP PHASE2:Hg19::chr6:170571770..170571782,-#_2b45ff122e9e5b95239fec2eafcab881 | p2@LOC154449 |
| 1.46e-50 | FFCP PHASE1:Hg19::chr6:170571770..170571782,-#_2b45ff122e9e5b95239fec2eafcab881 | p2@LOC154449 |
| 2.42e-50 | FFCP PHASE1:Hg19::chr12:106697974..106697990,-#_5d9a20992abb66a75c037553ed0539aa | p31@CKAP4 |
| 2.42e-50 | FFCP PHASE1:Hg19::chr7:30202318..30202329,+#_5d9a20992abb66a75c037553ed0539aa | p@chr7:30202318..30202329, + |
| 2.42e-50 | FFCP PHASE1:Hg19::chr4:74005833..74005844,-#_5d9a20992abb66a75c037553ed0539aa | p@chr4:74005833..74005844, - |
| 2.42e-50 | FFCP PHASE1:Hg19::chr11:133996343..133996351,+#_5d9a20992abb66a75c037553ed0539aa | p8@JAM3 |
| 2.42e-50 | FFCP PHASE2:Hg19::chr10:7454514..7454525,-#_5d9a20992abb66a75c037553ed0539aa | p@chr10:7454514..7454525, - |
| 2.42e-50 | FFCP PHASE2:Hg19::chrX:103031196..103031205,-#_5d9a20992abb66a75c037553ed0539aa | p@chrX:103031196..103031205, - |
| 2.42e-50 | FFCP PHASE2:Hg19::chr12:106697974..106697990,-#_5d9a20992abb66a75c037553ed0539aa | p31@CKAP4 |
| 2.42e-50 | FFCP PHASE2:Hg19::chr19:15751984..15751994,+#_5d9a20992abb66a75c037553ed0539aa | p6@CYP4F3 |
| 2.42e-50 | FFCP PHASE1:Hg19::chr10:7454514..7454525,-#_5d9a20992abb66a75c037553ed0539aa | p@chr10:7454514..7454525, - |
| 2.42e-50 | FFCP PHASE1:Hg19::chrX:103031196..103031205,-#_5d9a20992abb66a75c037553ed0539aa | p@chrX:103031196..103031205, - |
| 2.42e-50 | FFCP PHASE2:Hg19::chr7:30202318..30202329,+#_5d9a20992abb66a75c037553ed0539aa | p@chr7:30202318..30202329, + |
| 2.42e-50 | FFCP PHASE1:Hg19::chr19:15751984..15751994,+#_5d9a20992abb66a75c037553ed0539aa | p6@CYP4F3 |
| 2.42e-50 | FFCP PHASE2:Hg19::chr4:74005833..74005844,-#_5d9a20992abb66a75c037553ed0539aa | p@chr4:74005833..74005844, - |
| 2.42e-50 | FFCP PHASE2:Hg19::chr11:133996343..133996351,+#_5d9a20992abb66a75c037553ed0539aa | p8@JAM3 |
| 3.99e-50 | FFCP PHASE1:Hg19::chr9:20927844..20927855,+#_1f60058f4d6e52b5f6b994ab299952f6 | p@chr9:20927844..20927855, + |
| 3.99e-50 | FFCP PHASE2:Hg19::chr17:36726052..36726061,-#_1f60058f4d6e52b5f6b994ab299952f6 | p@chr17:36726052..36726061, - |
| 3.99e-50 | FFCP PHASE1:Hg19::chr17:36726052..36726061,-#_1f60058f4d6e52b5f6b994ab299952f6 | p@chr17:36726052..36726061, - |
| 3.99e-50 | FFCP PHASE2:Hg19::chr11:45922629..45922637,+#_1f60058f4d6e52b5f6b994ab299952f6 | p@chr11:45922629..45922637, + |
| 3.99e-50 | FFCP PHASE2:Hg19::chr3:160203278..160203289,-#_1f60058f4d6e52b5f6b994ab299952f6 | p8@TRIM59 |
| 3.99e-50 | FFCP PHASE2:Hg19::chr6:164364681..164364684,-#_1f60058f4d6e52b5f6b994ab299952f6 | p@chr6:164364681..164364684, - |
| 3.99e-50 | FFCP PHASE1:Hg19::chr3:160203278..160203289,-#_1f60058f4d6e52b5f6b994ab299952f6 | p8@TRIM59 |
| 3.99e-50 | FFCP PHASE1:Hg19::chr6:164364681..164364684,-#_1f60058f4d6e52b5f6b994ab299952f6 | p@chr6:164364681..164364684, - |
| 3.99e-50 | FFCP PHASE2:Hg19::chr9:20927844..20927855,+#_1f60058f4d6e52b5f6b994ab299952f6 | p@chr9:20927844..20927855, + |
| 3.99e-50 | FFCP PHASE1:Hg19::chr11:45922629..45922637,+#_1f60058f4d6e52b5f6b994ab299952f6 | p@chr11:45922629..45922637, + |
| 6.58e-50 | FFCP PHASE2:Hg19::chr6:133119649..133119655,-#_5b42d5b45a0bedf494a97b335180eb2d | p6@C6orf192 |
| 6.58e-50 | FFCP PHASE1:Hg19::chr2:219610931..219610941,+#_5b42d5b45a0bedf494a97b335180eb2d | p13@TTLL4 |
| 6.58e-50 | FFCP PHASE2:Hg19::chr12:99288459..99288464,-#_5b42d5b45a0bedf494a97b335180eb2d | p38@ANKS1B |
| 6.58e-50 | FFCP PHASE1:Hg19::chr12:99288459..99288464,-#_5b42d5b45a0bedf494a97b335180eb2d | p38@ANKS1B |
| 6.58e-50 | FFCP PHASE2:Hg19::chr4:7412700..7412704,+#_5b42d5b45a0bedf494a97b335180eb2d | p@chr4:7412700..7412704, + |
| 6.58e-50 | FFCP PHASE1:Hg19::chr6:133119649..133119655,-#_5b42d5b45a0bedf494a97b335180eb2d | p6@C6orf192 |
| 6.58e-50 | FFCP PHASE2:Hg19::chr3:190578500..190578506,-#_5b42d5b45a0bedf494a97b335180eb2d | p@chr3:190578500..190578506, - |
| 6.58e-50 | FFCP PHASE1:Hg19::chr11:67190503..67190512,+#_5b42d5b45a0bedf494a97b335180eb2d | p8@CARNS1 |
| 6.58e-50 | FFCP PHASE1:Hg19::chr11:117585539..117585541,-#_5b42d5b45a0bedf494a97b335180eb2d | p@chr11:117585539..117585541, - |
| 6.58e-50 | FFCP PHASE1:Hg19::chr4:7412700..7412704,+#_5b42d5b45a0bedf494a97b335180eb2d | p@chr4:7412700..7412704, + |
| 6.58e-50 | FFCP PHASE2:Hg19::chr3:10706167..10706179,-#_5b42d5b45a0bedf494a97b335180eb2d | p@chr3:10706167..10706179, - |
| 6.58e-50 | FFCP PHASE2:Hg19::chrX:28605300..28605301,+#_5b42d5b45a0bedf494a97b335180eb2d | p8@IL1RAPL1 |
| 6.58e-50 | FFCP PHASE1:Hg19::chr3:190578500..190578506,-#_5b42d5b45a0bedf494a97b335180eb2d | p@chr3:190578500..190578506, - |
| 6.58e-50 | FFCP PHASE1:Hg19::chr3:10706167..10706179,-#_5b42d5b45a0bedf494a97b335180eb2d | p@chr3:10706167..10706179, - |
| 6.58e-50 | FFCP PHASE1:Hg19::chrX:28605300..28605301,+#_5b42d5b45a0bedf494a97b335180eb2d | p8@IL1RAPL1 |
| 6.58e-50 | FFCP PHASE2:Hg19::chr9:112191163..112191174,-#_5b42d5b45a0bedf494a97b335180eb2d | p10@PTPN3 |
| 6.58e-50 | FFCP PHASE2:Hg19::chr11:67190503..67190512,+#_5b42d5b45a0bedf494a97b335180eb2d | p8@CARNS1 |
| 6.58e-50 | FFCP PHASE2:Hg19::chr2:219610931..219610941,+#_5b42d5b45a0bedf494a97b335180eb2d | p13@TTLL4 |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Multi-tissue structure comprised largely of myelinated axons.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
