UBERON:0002075: Difference between revisions
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|obo_creation_date= | |obo_creation_date= | ||
|subset=organ_slim;;uberon_slim | |subset=organ_slim;;uberon_slim | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "An internal organ of the body; especially: one (as the heart, liver, or intestine) located in the great cavity of the trunk proper.[AAO]" xsd:string | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 17:01, 26 June 2012
| Name: | viscus | ||
|---|---|---|---|
| Definition: | "An organ that is located within the body cavity (or in its extension, in the scrotum); it consists of organ parts that are embryologically derived from endoderm, splanchnic mesoderm or intermediate mesoderm; together with other organs, the viscus constitutes the respiratory, gastrointestinal, urinary, reproductive and immune systems, or is the central organ of the cardiovascular system. Examples: heart, lung, esophagus, kidney, ovary, spleen. // An internal organ of the body; especially: one (as the heart, liver, or intestine) located in the great cavity of the trunk proper." [BTO:0001491, Wikipedia:Viscus] | ||
| Xrefs: |
| ||
| Synonyms: |
"viscera" RELATED [] "visceral organ" EXACT [RETIRED_EHDAA2:0002201] | ||
| Comments: | general anatomical term in FMA. Note that we place the MA class here temporarily, although properly systems should be distinguished from organs | ||
| Alt_id: | UBERON:FMA_7085-XAO_0003034 | ||
| Subset: |
organ_slim uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0005177(trunk region element) |
|---|
Children
| is a: | UBERON:0001255 (urinary bladder),UBERON:0001264 (pancreas),UBERON:0017672 (abdominal viscera) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10011-101C2 (bladder, adult, pool1)
- 10025-101D7 (spleen, adult, pool1)
- 10044-101F8 (spleen, fetal, pool1)
- 10049-101G4 (pancreas, adult, donor1)
- 10095-102C5
- 10198-103E9 (gall bladder, adult)
- 10415-106C1 (gall bladder carcinoma cell line:TGBC2TKB)
- 10418-106C4 (transitional-cell carcinoma cell line:5637)
- 10424-106D1 (splenic lymphoma with villous lymphocytes cell line:SLVL)
- 10438-106E6 (ductal cell carcinoma cell line:KLM-1)
... further results Mouse (Mus musculus)
- 10011-101C2 (bladder, adult, pool1)
- 10025-101D7 (spleen, adult, pool1)
- 10044-101F8 (spleen, fetal, pool1)
- 10049-101G4 (pancreas, adult, donor1)
- 10095-102C5
- 10198-103E9 (gall bladder, adult)
- 10415-106C1 (gall bladder carcinoma cell line:TGBC2TKB)
- 10418-106C4 (transitional-cell carcinoma cell line:5637)
- 10424-106D1 (splenic lymphoma with villous lymphocytes cell line:SLVL)
- 10438-106E6 (ductal cell carcinoma cell line:KLM-1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002075 (viscus), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.68e-54 | FFCP PHASE1:Mm9::chr19:58804381..58804392,+#_712128b96e943229b60e61e81d884966 | p@chr19:58804381..58804392, + |
| 1.68e-54 | FFCP PHASE2:Mm9::chr6:30494986..30494997,+#_712128b96e943229b60e61e81d884966 | p@chr6:30494986..30494997, + |
| 1.68e-54 | FFCP PHASE1:Mm9::chr6:30494986..30494997,+#_712128b96e943229b60e61e81d884966 | p@chr6:30494986..30494997, + |
| 1.68e-54 | FFCP PHASE2:Mm9::chr19:58804381..58804392,+#_712128b96e943229b60e61e81d884966 | p@chr19:58804381..58804392, + |
| 1.92e-50 | FFCP PHASE2:Mm9::chr19:58815004..58815018,+#_02472c280ceb326d732fa4cb123ab646 | p@chr19:58815004..58815018, + |
| 1.92e-50 | FFCP PHASE1:Mm9::chr19:58815004..58815018,+#_02472c280ceb326d732fa4cb123ab646 | p@chr19:58815004..58815018, + |
| 5.23e-50 | FFCP PHASE1:Mm9::chr8:114225711..114225718,+#_0d47e3e8cdc1c5d37b5263493d1de0f6 | p@chr8:114225711..114225718, + |
| 5.23e-50 | FFCP PHASE2:Mm9::chr8:114214659..114214665,-#_0d47e3e8cdc1c5d37b5263493d1de0f6 | p@chr8:114214659..114214665, - |
| 5.23e-50 | FFCP PHASE2:Mm9::chr2:19410182..19410200,+#_0d47e3e8cdc1c5d37b5263493d1de0f6 | p@chr2:19410182..19410200, + |
| 5.23e-50 | FFCP PHASE2:Mm9::chr15:52127064..52127100,+#_0d47e3e8cdc1c5d37b5263493d1de0f6 | p2@Slc30a8 |
| 5.23e-50 | FFCP PHASE1:Mm9::chr8:114214659..114214665,-#_0d47e3e8cdc1c5d37b5263493d1de0f6 | p@chr8:114214659..114214665, - |
| 5.23e-50 | FFCP PHASE2:Mm9::chr2:19374076..19374083,+#_0d47e3e8cdc1c5d37b5263493d1de0f6 | p2@ENSMUST00000149577 |
| 5.23e-50 | FFCP PHASE1:Mm9::chr15:52127064..52127100,+#_0d47e3e8cdc1c5d37b5263493d1de0f6 | p2@Slc30a8 |
| 5.23e-50 | FFCP PHASE1:Mm9::chr13:59680417..59680420,+#_0d47e3e8cdc1c5d37b5263493d1de0f6 | p@chr13:59680417..59680420, + |
| 5.23e-50 | FFCP PHASE1:Mm9::chr2:19374076..19374083,+#_0d47e3e8cdc1c5d37b5263493d1de0f6 | p2@ENSMUST00000149577 |
| 5.23e-50 | FFCP PHASE2:Mm9::chr8:114212440..114212443,-#_0d47e3e8cdc1c5d37b5263493d1de0f6 | p@chr8:114212440..114212443, - |
| 5.23e-50 | FFCP PHASE2:Mm9::chr5:54068360..54068364,+#_0d47e3e8cdc1c5d37b5263493d1de0f6 | p@chr5:54068360..54068364, + |
| 5.23e-50 | FFCP PHASE2:Mm9::chr13:59680417..59680420,+#_0d47e3e8cdc1c5d37b5263493d1de0f6 | p@chr13:59680417..59680420, + |
| 5.23e-50 | FFCP PHASE1:Mm9::chr8:114212440..114212443,-#_0d47e3e8cdc1c5d37b5263493d1de0f6 | p@chr8:114212440..114212443, - |
| 5.23e-50 | FFCP PHASE2:Mm9::chr8:114225711..114225718,+#_0d47e3e8cdc1c5d37b5263493d1de0f6 | p@chr8:114225711..114225718, + |
| 5.23e-50 | FFCP PHASE1:Mm9::chr2:19410182..19410200,+#_0d47e3e8cdc1c5d37b5263493d1de0f6 | p@chr2:19410182..19410200, + |
| 5.23e-50 | FFCP PHASE1:Mm9::chr5:54068360..54068364,+#_0d47e3e8cdc1c5d37b5263493d1de0f6 | p@chr5:54068360..54068364, + |
| 5.23e-50 | FFCP PHASE1:Mm9::chr9:60297477..60297496,-#_0d47e3e8cdc1c5d37b5263493d1de0f6 | p@chr9:60297477..60297496, - |
| 5.23e-50 | FFCP PHASE2:Mm9::chr9:60297477..60297496,-#_0d47e3e8cdc1c5d37b5263493d1de0f6 | p@chr9:60297477..60297496, - |
| 3.33e-48 | FFCP PHASE1:Mm9::chr9:69950924..69950949,-#_3bb6297dd5e294578a20ffbaa67f9c22 | p4@Fam81a |
| 3.33e-48 | FFCP PHASE2:Mm9::chr9:69950924..69950949,-#_3bb6297dd5e294578a20ffbaa67f9c22 | p4@Fam81a |
| 5.18e-48 | FFCP PHASE2:Mm9::chr6:30501460..30501464,+#_53b8e327613d2b3412f33c906b68ea36 | p3@Cpa2 |
| 5.18e-48 | FFCP PHASE1:Mm9::chr6:30501460..30501464,+#_53b8e327613d2b3412f33c906b68ea36 | p3@Cpa2 |
| 6.36e-47 | FFCP PHASE2:Mm9::chr7:31343792..31343804,-#_49f2045c2db0ec41dec863a6b3565cd2 | p@chr7:31343792..31343804, - |
| 6.36e-47 | FFCP PHASE1:Mm9::chr7:31343792..31343804,-#_49f2045c2db0ec41dec863a6b3565cd2 | p@chr7:31343792..31343804, - |
| 5.92e-46 | FFCP PHASE1:Mm9::chr5:54097752..54097764,-#_d92299b924780e2edd7318e1a60ba56d | p@chr5:54097752..54097764, - |
| 5.92e-46 | FFCP PHASE2:Mm9::chr5:54097752..54097764,-#_d92299b924780e2edd7318e1a60ba56d | p@chr5:54097752..54097764, - |
| 5.92e-46 | FFCP PHASE2:Mm9::chr19:58818563..58818576,-#_d92299b924780e2edd7318e1a60ba56d | p@chr19:58818563..58818576, - |
| 5.92e-46 | FFCP PHASE2:Mm9::chr15:52127197..52127209,+#_d92299b924780e2edd7318e1a60ba56d | p1@Slc30a8 |
| 5.92e-46 | FFCP PHASE1:Mm9::chr5:54098551..54098567,-#_d92299b924780e2edd7318e1a60ba56d | p4@Cckar |
| 5.92e-46 | FFCP PHASE1:Mm9::chr15:52127197..52127209,+#_d92299b924780e2edd7318e1a60ba56d | p1@Slc30a8 |
| 5.92e-46 | FFCP PHASE2:Mm9::chr5:54098551..54098567,-#_d92299b924780e2edd7318e1a60ba56d | p4@Cckar |
| 5.92e-46 | FFCP PHASE2:Mm9::chr8:114215028..114215041,-#_d92299b924780e2edd7318e1a60ba56d | p2@Ctrb1 |
| 5.92e-46 | FFCP PHASE1:Mm9::chr8:114215028..114215041,-#_d92299b924780e2edd7318e1a60ba56d | p2@Ctrb1 |
| 5.92e-46 | FFCP PHASE1:Mm9::chr19:58818563..58818576,-#_d92299b924780e2edd7318e1a60ba56d | p@chr19:58818563..58818576, - |
| 6.54e-46 | FFCP PHASE1:Mm9::chr17:46727416..46727433,-#_a7df30be2abc09149b37a0fbe37bea9a | p@chr17:46727416..46727433, - |
| 6.54e-46 | FFCP PHASE2:Mm9::chr17:46727416..46727433,-#_a7df30be2abc09149b37a0fbe37bea9a | p@chr17:46727416..46727433, - |
| 7.97e-46 | FFCP PHASE1:Mm9::chr18:34531496..34531499,-#_6aadd3980f26f6b07b9cc1eb6e3e45c8 | p@chr18:34531496..34531499, - |
| 7.97e-46 | FFCP PHASE2:Mm9::chr18:34531496..34531499,-#_6aadd3980f26f6b07b9cc1eb6e3e45c8 | p@chr18:34531496..34531499, - |
| 1.55e-45 | FFCP PHASE2:Mm9::chr15:37020111..37020125,+#_5275667342e59ed22478330b3ad2d823 | p@chr15:37020111..37020125, + |
| 1.55e-45 | FFCP PHASE1:Mm9::chr8:114210563..114210566,+#_5275667342e59ed22478330b3ad2d823 | p@chr8:114210563..114210566, + |
| 1.55e-45 | FFCP PHASE2:Mm9::chr19:58812793..58812802,+#_5275667342e59ed22478330b3ad2d823 | p@chr19:58812793..58812802, + |
| 1.55e-45 | FFCP PHASE2:Mm9::chr16:62881258..62881265,-#_5275667342e59ed22478330b3ad2d823 | p@chr16:62881258..62881265, - |
| 1.55e-45 | FFCP PHASE1:Mm9::chr7:31243262..31243273,+#_5275667342e59ed22478330b3ad2d823 | p6@Nphs1 |
| 1.55e-45 | FFCP PHASE1:Mm9::chr19:58813935..58813941,+#_5275667342e59ed22478330b3ad2d823 | p@chr19:58813935..58813941, + |
| 1.55e-45 | FFCP PHASE1:Mm9::chr7:130565024..130565035,+#_5275667342e59ed22478330b3ad2d823 | p2@Lcmt1 |
| 1.55e-45 | FFCP PHASE2:Mm9::chr6:51270916..51270924,-#_5275667342e59ed22478330b3ad2d823 | p@chr6:51270916..51270924, - |
| 1.55e-45 | FFCP PHASE1:Mm9::chr7:29325737..29325747,+#_5275667342e59ed22478330b3ad2d823 | p3@Sycn |
| 1.55e-45 | FFCP PHASE2:Mm9::chr19:58812844..58812855,+#_5275667342e59ed22478330b3ad2d823 | p@chr19:58812844..58812855, + |
| 1.55e-45 | FFCP PHASE1:Mm9::chr19:58812762..58812772,+#_5275667342e59ed22478330b3ad2d823 | p@chr19:58812762..58812772, + |
| 1.55e-45 | FFCP PHASE2:Mm9::chr7:31243262..31243273,+#_5275667342e59ed22478330b3ad2d823 | p6@Nphs1 |
| 1.55e-45 | FFCP PHASE1:Mm9::chr6:51270916..51270924,-#_5275667342e59ed22478330b3ad2d823 | p@chr6:51270916..51270924, - |
| 1.55e-45 | FFCP PHASE2:Mm9::chr8:114210563..114210566,+#_5275667342e59ed22478330b3ad2d823 | p@chr8:114210563..114210566, + |
| 1.55e-45 | FFCP PHASE1:Mm9::chr16:62881258..62881265,-#_5275667342e59ed22478330b3ad2d823 | p@chr16:62881258..62881265, - |
| 1.55e-45 | FFCP PHASE1:Mm9::chr4:141378178..141378181,-#_5275667342e59ed22478330b3ad2d823 | p@chr4:141378178..141378181, - |
| 1.55e-45 | FFCP PHASE2:Mm9::chr19:58813935..58813941,+#_5275667342e59ed22478330b3ad2d823 | p@chr19:58813935..58813941, + |
| 1.55e-45 | FFCP PHASE2:Mm9::chr8:114214342..114214354,-#_5275667342e59ed22478330b3ad2d823 | p@chr8:114214342..114214354, - |
| 1.55e-45 | FFCP PHASE2:Mm9::chr11:104162667..104162680,-#_5275667342e59ed22478330b3ad2d823 | p@chr11:104162667..104162680, - |
| 1.55e-45 | FFCP PHASE1:Mm9::chr19:58812793..58812802,+#_5275667342e59ed22478330b3ad2d823 | p@chr19:58812793..58812802, + |
| 1.55e-45 | FFCP PHASE1:Mm9::chr11:104162667..104162680,-#_5275667342e59ed22478330b3ad2d823 | p@chr11:104162667..104162680, - |
| 1.55e-45 | FFCP PHASE2:Mm9::chr4:141378178..141378181,-#_5275667342e59ed22478330b3ad2d823 | p@chr4:141378178..141378181, - |
| 1.55e-45 | FFCP PHASE2:Mm9::chr7:29325737..29325747,+#_5275667342e59ed22478330b3ad2d823 | p3@Sycn |
| 1.55e-45 | FFCP PHASE1:Mm9::chr18:39522574..39522590,+#_5275667342e59ed22478330b3ad2d823 | p@chr18:39522574..39522590, + |
| 1.55e-45 | FFCP PHASE1:Mm9::chr5:43495214..43495226,+#_5275667342e59ed22478330b3ad2d823 | p@chr5:43495214..43495226, + |
| 1.55e-45 | FFCP PHASE1:Mm9::chr8:114214342..114214354,-#_5275667342e59ed22478330b3ad2d823 | p@chr8:114214342..114214354, - |
| 1.55e-45 | FFCP PHASE2:Mm9::chr18:39522574..39522590,+#_5275667342e59ed22478330b3ad2d823 | p@chr18:39522574..39522590, + |
| 1.55e-45 | FFCP PHASE1:Mm9::chr18:17942879..17942880,-#_5275667342e59ed22478330b3ad2d823 | p@chr18:17942879..17942880, - |
| 1.55e-45 | FFCP PHASE2:Mm9::chr19:58812762..58812772,+#_5275667342e59ed22478330b3ad2d823 | p@chr19:58812762..58812772, + |
| 1.55e-45 | FFCP PHASE2:Mm9::chr5:43495214..43495226,+#_5275667342e59ed22478330b3ad2d823 | p@chr5:43495214..43495226, + |
| 1.55e-45 | FFCP PHASE1:Mm9::chr15:37020111..37020125,+#_5275667342e59ed22478330b3ad2d823 | p@chr15:37020111..37020125, + |
| 1.55e-45 | FFCP PHASE1:Mm9::chr19:58812844..58812855,+#_5275667342e59ed22478330b3ad2d823 | p@chr19:58812844..58812855, + |
| 1.55e-45 | FFCP PHASE2:Mm9::chr18:17942879..17942880,-#_5275667342e59ed22478330b3ad2d823 | p@chr18:17942879..17942880, - |
| 1.55e-45 | FFCP PHASE2:Mm9::chr7:130565024..130565035,+#_5275667342e59ed22478330b3ad2d823 | p2@Lcmt1 |
| 2.02e-45 | FFCP PHASE2:Mm9::chr4:136454147..136454172,-#_3ab11a11e212747460b1742f88639622 | p@chr4:136454147..136454172, - |
| 2.02e-45 | FFCP PHASE1:Mm9::chr4:136454147..136454172,-#_3ab11a11e212747460b1742f88639622 | p@chr4:136454147..136454172, - |
| 6.03e-44 | FFCP PHASE1:Mm9::chr2:19353621..19353653,-#_c1cca4588da98dbbe759adb6d468797f | p1@ENSMUST00000137714 |
| 6.03e-44 | FFCP PHASE2:Mm9::chr2:28335694..28335705,+#_c1cca4588da98dbbe759adb6d468797f | p@chr2:28335694..28335705, + |
| 6.03e-44 | FFCP PHASE1:Mm9::chr2:28335694..28335705,+#_c1cca4588da98dbbe759adb6d468797f | p@chr2:28335694..28335705, + |
| 6.03e-44 | FFCP PHASE2:Mm9::chr2:19353621..19353653,-#_c1cca4588da98dbbe759adb6d468797f | p1@ENSMUST00000137714 |
| 6.58e-44 | FFCP PHASE2:Mm9::chr7:31343761..31343766,-#_59dad32c9773462881bbb3d02c4f7fd0 | p@chr7:31343761..31343766, - |
| 6.58e-44 | FFCP PHASE1:Mm9::chr7:31343761..31343766,-#_59dad32c9773462881bbb3d02c4f7fd0 | p@chr7:31343761..31343766, - |
| 7.83e-44 | FFCP PHASE2:Mm9::chr1:133735373..133735386,+#_cc6e1d99d1bd70c7b7899f683f91b861 | p@chr1:133735373..133735386, + |
| 7.83e-44 | FFCP PHASE1:Mm9::chr1:133735373..133735386,+#_cc6e1d99d1bd70c7b7899f683f91b861 | p@chr1:133735373..133735386, + |
| 7.61e-43 | FFCP PHASE2:Mm9::chr6:30590915..30590951,-#_7720690762f09999a4288dacd6477417 | p@chr6:30590915..30590951, - |
| 7.61e-43 | FFCP PHASE1:Mm9::chr6:30590915..30590951,-#_7720690762f09999a4288dacd6477417 | p@chr6:30590915..30590951, - |
| 1.6e-42 | FFCP PHASE2:Mm9::chr19:58811529..58811552,-#_3a052b07e85702dc316448b5a64dabf7 | p@chr19:58811529..58811552, - |
| 1.6e-42 | FFCP PHASE2:Mm9::chr8:114214263..114214282,-#_3a052b07e85702dc316448b5a64dabf7 | p@chr8:114214263..114214282, - |
| 1.6e-42 | FFCP PHASE1:Mm9::chr8:114214263..114214282,-#_3a052b07e85702dc316448b5a64dabf7 | p@chr8:114214263..114214282, - |
| 1.6e-42 | FFCP PHASE2:Mm9::chr3:112959660..112959680,-#_3a052b07e85702dc316448b5a64dabf7 | p1@Amy2b |
| 1.6e-42 | FFCP PHASE1:Mm9::chr19:58811529..58811552,-#_3a052b07e85702dc316448b5a64dabf7 | p@chr19:58811529..58811552, - |
| 1.6e-42 | FFCP PHASE2:Mm9::chr8:114214598..114214609,-#_3a052b07e85702dc316448b5a64dabf7 | p@chr8:114214598..114214609, - |
| 1.6e-42 | FFCP PHASE1:Mm9::chr3:112959660..112959680,-#_3a052b07e85702dc316448b5a64dabf7 | p1@Amy2b |
| 1.6e-42 | FFCP PHASE1:Mm9::chr8:114214598..114214609,-#_3a052b07e85702dc316448b5a64dabf7 | p@chr8:114214598..114214609, - |
| 1.75e-42 | FFCP PHASE1:Mm9::chr6:51270886..51270895,-#_a1df8df620dd9c67d6a644b6c39a6afa | p@chr6:51270886..51270895, - |
| 1.75e-42 | FFCP PHASE2:Mm9::chr6:51270886..51270895,-#_a1df8df620dd9c67d6a644b6c39a6afa | p@chr6:51270886..51270895, - |
Property "Property value" (as page type) with input value "UBPROP:0000001 "An internal organ of the body; especially: one (as the heart, liver, or intestine) located in the great cavity of the trunk proper.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
