UBERON:0000072: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 14: | Line 14: | ||
|obo_creation_date= | |obo_creation_date= | ||
|subset= | |subset= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 16:55, 26 June 2012
| Name: | segment of respiratory tract | ||
|---|---|---|---|
| Definition: | "An organ segment that is part of a respiratory tract [Obol]." [OBOL:automatic] | ||
| Xrefs: |
| ||
| Synonyms: | "respiratory tract" RELATED [MA:0000434] | ||
| Comments: | Note that MA:0000434 has subclasses upper and lower, so it corresponds to a segment of the tract, rather than the tract as a whole |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000063(organ segment),UBERON:0004119(endoderm-derived structure) |
|---|
Children
| is a: | UBERON:0001557 (upper respiratory tract),UBERON:0001558 (lower respiratory tract),UBERON:0002186 (bronchiole) |
|---|---|
| part of: | UBERON:0004802 (respiratory tract epithelium) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10029-101E2 (trachea, adult, pool1)
- 10058-101H4 (trachea, fetal, donor1)
- 10099-102C9
- 10275-104E5
- 10303-104H6
- 10331-105B7
- 10408-106B3 (lung adenocarcinoma cell line:PC-14)
- 10457-106G7 (squamous cell lung carcinoma cell line:LC-1F)
- 10462-106H3
- 10468-106H9
... further results Mouse (Mus musculus)
- 10029-101E2 (trachea, adult, pool1)
- 10058-101H4 (trachea, fetal, donor1)
- 10099-102C9
- 10275-104E5
- 10303-104H6
- 10331-105B7
- 10408-106B3 (lung adenocarcinoma cell line:PC-14)
- 10457-106G7 (squamous cell lung carcinoma cell line:LC-1F)
- 10462-106H3
- 10468-106H9
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000072 (segment of respiratory tract), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 6.59e-58 | FFCP PHASE2:Mm9::chr6:41483113..41483131,+#_5669da61545a854c3a0d12d74ce419c3 | p4@uc009bpa.1 |
| 6.59e-58 | FFCP PHASE1:Mm9::chr6:41483113..41483131,+#_5669da61545a854c3a0d12d74ce419c3 | p4@uc009bpa.1 |
| 4.47e-57 | FFCP PHASE1:Mm9::chr6:41483037..41483046,+#_5a405d23179773a8be9cdb73cbeb8831 | p8@uc009bpa.1 |
| 4.47e-57 | FFCP PHASE2:Mm9::chr6:41483037..41483046,+#_5a405d23179773a8be9cdb73cbeb8831 | p8@uc009bpa.1 |
| 1.73e-55 | FFCP PHASE2:Mm9::chr6:41485075..41485096,+#_efe78cfa36f93121935dd5deaa0af182 | p1@ENSMUST00000103288, p1@uc009bpl.1 |
| 1.73e-55 | FFCP PHASE1:Mm9::chr6:41485075..41485096,+#_efe78cfa36f93121935dd5deaa0af182 | p1@ENSMUST00000103288, p1@uc009bpl.1 |
| 1.82e-54 | FFCP PHASE2:Mm9::chr6:41491752..41491776,-#_fcf46c76edce8a88518945785d677c2f | p@chr6:41491752..41491776, - |
| 1.82e-54 | FFCP PHASE2:Mm9::chr12:108361918..108361930,-#_fcf46c76edce8a88518945785d677c2f | p@chr12:108361918..108361930, - |
| 1.82e-54 | FFCP PHASE1:Mm9::chr6:41491752..41491776,-#_fcf46c76edce8a88518945785d677c2f | p@chr6:41491752..41491776, - |
| 1.82e-54 | FFCP PHASE1:Mm9::chr12:108361918..108361930,-#_fcf46c76edce8a88518945785d677c2f | p@chr12:108361918..108361930, - |
| 2.68e-53 | FFCP PHASE1:Mm9::chr6:41483173..41483188,+#_b4c83541cfa3bae6d09d33e32ba86bf2 | p2@ENSMUST00000103283 |
| 2.68e-53 | FFCP PHASE2:Mm9::chr6:41483173..41483188,+#_b4c83541cfa3bae6d09d33e32ba86bf2 | p2@ENSMUST00000103283 |
| 3.26e-53 | FFCP PHASE1:Mm9::chr6:41484803..41484826,+#_aa81a274d688877b02964924f7d1d45a | p1@ENSMUST00000103287, p1@uc009bpi.1, p1@uc009bpj.1 |
| 3.26e-53 | FFCP PHASE2:Mm9::chr6:41484803..41484826,+#_aa81a274d688877b02964924f7d1d45a | p1@ENSMUST00000103287, p1@uc009bpi.1, p1@uc009bpj.1 |
| 3.39e-52 | FFCP PHASE1:Mm9::chr9:44807434..44807445,-#_18efd7303b8ff2fd249ab88e2529c37b | p@chr9:44807434..44807445, - |
| 3.39e-52 | FFCP PHASE2:Mm9::chr9:44807434..44807445,-#_18efd7303b8ff2fd249ab88e2529c37b | p@chr9:44807434..44807445, - |
| 3.7e-52 | FFCP PHASE1:Mm9::chr6:41494001..41494028,+#_759f4bd995e7d7fe5277120a3cb6c955 | p@chr6:41494001..41494028, + |
| 3.7e-52 | FFCP PHASE2:Mm9::chr6:41494001..41494028,+#_759f4bd995e7d7fe5277120a3cb6c955 | p@chr6:41494001..41494028, + |
| 8.3e-52 | FFCP PHASE2:Mm9::chr2:11093788..11093799,+#_c7b10129a875aeb77e16e4d941e9fcb3 | p11@Prkcq |
| 8.3e-52 | FFCP PHASE1:Mm9::chr2:11093788..11093799,+#_c7b10129a875aeb77e16e4d941e9fcb3 | p11@Prkcq |
| 8.95e-52 | FFCP PHASE1:Mm9::chr9:44809185..44809215,-#_6e1726dc5d6e5d6abd80d9d850ca4006 | p@chr9:44809185..44809215, - |
| 8.95e-52 | FFCP PHASE2:Mm9::chr9:44809185..44809215,-#_6e1726dc5d6e5d6abd80d9d850ca4006 | p@chr9:44809185..44809215, - |
| 1.93e-51 | FFCP PHASE1:Mm9::chr14:54791784..54791787,+#_11265b55649ac47443b59fe8c6713f8e | p@chr14:54791784..54791787, + |
| 1.93e-51 | FFCP PHASE2:Mm9::chr14:54791784..54791787,+#_11265b55649ac47443b59fe8c6713f8e | p@chr14:54791784..54791787, + |
| 3.14e-51 | FFCP PHASE2:Mm9::chr6:40997465..40997489,+#_48eddf473bd6825794d1a0e1fa59e069 | p1@ENSMUST00000103263 |
| 3.14e-51 | FFCP PHASE1:Mm9::chr6:40997465..40997489,+#_48eddf473bd6825794d1a0e1fa59e069 | p1@ENSMUST00000103263 |
| 6.04e-51 | FFCP PHASE2:Mm9::chr9:44793518..44793537,+#_f7f324a9c82132b285ffa061b3b0fae5 | p@chr9:44793518..44793537, + |
| 6.04e-51 | FFCP PHASE1:Mm9::chr9:44793518..44793537,+#_f7f324a9c82132b285ffa061b3b0fae5 | p@chr9:44793518..44793537, + |
| 6.18e-51 | FFCP PHASE1:Mm9::chr10:28388454..28388458,+#_f5fb80251d800a5272331523f344dc1c | p5@Themis |
| 6.18e-51 | FFCP PHASE2:Mm9::chr10:28388454..28388458,+#_f5fb80251d800a5272331523f344dc1c | p5@Themis |
| 7.06e-51 | FFCP PHASE1:Mm9::chr6:41482920..41482933,+#_e51e030da76eca5ac5cddf9927e8fad8 | p5@uc009bpa.1 |
| 7.06e-51 | FFCP PHASE2:Mm9::chr6:41482920..41482933,+#_e51e030da76eca5ac5cddf9927e8fad8 | p5@uc009bpa.1 |
| 7.52e-51 | FFCP PHASE1:Mm9::chr6:41071548..41071565,+#_408c46c282b0d6b80ccce60e98b15b2f | p@chr6:41071548..41071565, + |
| 7.52e-51 | FFCP PHASE2:Mm9::chr6:41071548..41071565,+#_408c46c282b0d6b80ccce60e98b15b2f | p@chr6:41071548..41071565, + |
| 1.56e-50 | FFCP PHASE1:Mm9::chr6:40997323..40997349,+#_21f81d16107905d27074f2b9d50d78ff | p2@uc009bnp.1, p2@uc012eki.1 |
| 1.56e-50 | FFCP PHASE2:Mm9::chr6:40997323..40997349,+#_21f81d16107905d27074f2b9d50d78ff | p2@uc009bnp.1, p2@uc012eki.1 |
| 8.48e-50 | FFCP PHASE2:Mm9::chr11:52095797..52095809,-#_c44e5d2b51538940984d6d0a25496991 | p5@Tcf7 |
| 8.48e-50 | FFCP PHASE1:Mm9::chr11:52095797..52095809,-#_c44e5d2b51538940984d6d0a25496991 | p5@Tcf7 |
| 2.7e-49 | FFCP PHASE2:Mm9::chr14:61328148..61328173,+#_39bf031cdd1fb91c484bcbda7f9b7741 | p@chr14:61328148..61328173, + |
| 2.7e-49 | FFCP PHASE1:Mm9::chr14:61328148..61328173,+#_39bf031cdd1fb91c484bcbda7f9b7741 | p@chr14:61328148..61328173, + |
| 4.69e-49 | FFCP PHASE1:Mm9::chr6:41483016..41483036,+#_b77f0179e46ff8c5141028037fb4e07e | p2@uc009bpa.1 |
| 4.69e-49 | FFCP PHASE2:Mm9::chr6:41483016..41483036,+#_b77f0179e46ff8c5141028037fb4e07e | p2@uc009bpa.1 |
| 5.29e-49 | FFCP PHASE1:Mm9::chrX:39855684..39855699,+#_6927434b0908a6ee766905b332821f23 | p2@Sh2d1a |
| 5.29e-49 | FFCP PHASE2:Mm9::chrX:39855684..39855699,+#_6927434b0908a6ee766905b332821f23 | p2@Sh2d1a |
| 6.55e-49 | FFCP PHASE1:Mm9::chr6:41128981..41128995,+#_9da35900742a31a2bff6a7915b0db52b | p1@uc012ekr.1 |
| 6.55e-49 | FFCP PHASE2:Mm9::chr6:41128981..41128995,+#_9da35900742a31a2bff6a7915b0db52b | p1@uc012ekr.1 |
| 8.0e-49 | FFCP PHASE1:Mm9::chr6:40841675..40841691,+#_3f53e9f298b45ade4dd161920a375ef1 | p2@1810009J06Rik |
| 8.0e-49 | FFCP PHASE2:Mm9::chr6:40841675..40841691,+#_3f53e9f298b45ade4dd161920a375ef1 | p2@1810009J06Rik |
| 1.12e-48 | FFCP PHASE2:Mm9::chr6:41066036..41066054,+#_ab5abc746789efa771f6e5a0c263a325 | p1@uc012ekk.1 |
| 1.12e-48 | FFCP PHASE1:Mm9::chr6:41066036..41066054,+#_ab5abc746789efa771f6e5a0c263a325 | p1@uc012ekk.1 |
| 1.27e-48 | FFCP PHASE2:Mm9::chr6:41491943..41491953,+#_fdedb34cd5f72a93b7e3e528d454675f | p3@uc009bpo.1, p3@uc009bpp.1 |
| 1.27e-48 | FFCP PHASE2:Mm9::chr6:41009432..41009454,+#_fdedb34cd5f72a93b7e3e528d454675f | p1@ENSMUST00000103265 |
| 1.27e-48 | FFCP PHASE1:Mm9::chr6:41009432..41009454,+#_fdedb34cd5f72a93b7e3e528d454675f | p1@ENSMUST00000103265 |
| 1.27e-48 | FFCP PHASE1:Mm9::chr6:41491943..41491953,+#_fdedb34cd5f72a93b7e3e528d454675f | p3@uc009bpo.1, p3@uc009bpp.1 |
| 2.25e-48 | FFCP PHASE1:Mm9::chr7:133512043..133512060,-#_2808e1f26efae3cb6fac2b2103c6088c | p@chr7:133512043..133512060, - |
| 2.25e-48 | FFCP PHASE2:Mm9::chr7:133512043..133512060,-#_2808e1f26efae3cb6fac2b2103c6088c | p@chr7:133512043..133512060, - |
| 3.02e-48 | FFCP PHASE2:Mm9::chr6:41128837..41128859,+#_3758c3433bb095111de1ee0fe9250216 | p2@Gm5409 |
| 3.02e-48 | FFCP PHASE1:Mm9::chr6:41128837..41128859,+#_3758c3433bb095111de1ee0fe9250216 | p2@Gm5409 |
| 3.92e-48 | FFCP PHASE2:Mm9::chr16:48772258..48772270,-#_6067b8630a3ad4cfb39050242233c50a | p5@Trat1 |
| 3.92e-48 | FFCP PHASE1:Mm9::chr16:48772258..48772270,-#_6067b8630a3ad4cfb39050242233c50a | p5@Trat1 |
| 4.8e-48 | FFCP PHASE1:Mm9::chr6:41489240..41489252,+#_c8c097b2e797f16f6cbaf677b32164b3 | p@chr6:41489240..41489252, + |
| 4.8e-48 | FFCP PHASE2:Mm9::chr6:41489240..41489252,+#_c8c097b2e797f16f6cbaf677b32164b3 | p@chr6:41489240..41489252, + |
| 5.53e-48 | FFCP PHASE2:Mm9::chr16:48772215..48772256,-#_44bc7f8e2ae27f0001fe0f03234d712d | p4@Trat1 |
| 5.53e-48 | FFCP PHASE1:Mm9::chr16:48772215..48772256,-#_44bc7f8e2ae27f0001fe0f03234d712d | p4@Trat1 |
| 7.84e-48 | FFCP PHASE1:Mm9::chr6:41494376..41494389,-#_f4b3a1cf828658ccc1caf1194e45f4d4 | p@chr6:41494376..41494389, - |
| 7.84e-48 | FFCP PHASE2:Mm9::chr6:41494376..41494389,-#_f4b3a1cf828658ccc1caf1194e45f4d4 | p@chr6:41494376..41494389, - |
| 7.84e-48 | FFCP PHASE1:Mm9::chr6:41231266..41231303,+#_f4b3a1cf828658ccc1caf1194e45f4d4 | p1@ENSMUST00000103282 |
| 7.84e-48 | FFCP PHASE2:Mm9::chr6:41231266..41231303,+#_f4b3a1cf828658ccc1caf1194e45f4d4 | p1@ENSMUST00000103282 |
| 8.51e-48 | FFCP PHASE2:Mm9::chr14:54794540..54794554,+#_eb3e27494570edbf46747b4ebe312150 | p@chr14:54794540..54794554, + |
| 8.51e-48 | FFCP PHASE1:Mm9::chr14:54794540..54794554,+#_eb3e27494570edbf46747b4ebe312150 | p@chr14:54794540..54794554, + |
| 9.15e-48 | FFCP PHASE2:Mm9::chr14:54496363..54496388,+#_ffb36df6b721a7f1f3f466cd092d750c | p@chr14:54496363..54496388, + |
| 9.15e-48 | FFCP PHASE1:Mm9::chr6:41491801..41491815,-#_ffb36df6b721a7f1f3f466cd092d750c | p@chr6:41491801..41491815, - |
| 9.15e-48 | FFCP PHASE1:Mm9::chr14:54496363..54496388,+#_ffb36df6b721a7f1f3f466cd092d750c | p@chr14:54496363..54496388, + |
| 9.15e-48 | FFCP PHASE2:Mm9::chr6:41491801..41491815,-#_ffb36df6b721a7f1f3f466cd092d750c | p@chr6:41491801..41491815, - |
| 1.12e-47 | FFCP PHASE2:Mm9::chr6:41484314..41484337,+#_5e75c5648f9cfaf8b9bc4e5889eb9652 | p1@ENSMUST00000103286, p1@uc009bpg.1, p1@uc009bph.1 |
| 1.12e-47 | FFCP PHASE1:Mm9::chr6:41484314..41484337,+#_5e75c5648f9cfaf8b9bc4e5889eb9652 | p1@ENSMUST00000103286, p1@uc009bpg.1, p1@uc009bph.1 |
| 1.14e-47 | FFCP PHASE1:Mm9::chr7:133512914..133512925,-#_113554b6854a5329924912782b9b109e | p7@Lat |
| 1.14e-47 | FFCP PHASE2:Mm9::chr7:133512914..133512925,-#_113554b6854a5329924912782b9b109e | p7@Lat |
| 1.19e-47 | FFCP PHASE1:Mm9::chr11:53448200..53448205,-#_56144a0bfb92d9e4870804a696dece2d | p1@Il13 |
| 1.19e-47 | FFCP PHASE2:Mm9::chr11:53448200..53448205,-#_56144a0bfb92d9e4870804a696dece2d | p1@Il13 |
| 1.22e-47 | FFCP PHASE2:Mm9::chr6:41138311..41138333,+#_0bc82459fb262abf2469c77364377734 | p@chr6:41138311..41138333, + |
| 1.22e-47 | FFCP PHASE1:Mm9::chr6:41138311..41138333,+#_0bc82459fb262abf2469c77364377734 | p@chr6:41138311..41138333, + |
| 1.42e-47 | FFCP PHASE2:Mm9::chr6:41493801..41493826,+#_d99f7af26d9a0c5bf80d4fcf89f18983 | p1@ENSMUST00000103298, p1@uc009bpy.1 |
| 1.42e-47 | FFCP PHASE1:Mm9::chr6:41493801..41493826,+#_d99f7af26d9a0c5bf80d4fcf89f18983 | p1@ENSMUST00000103298, p1@uc009bpy.1 |
| 1.49e-47 | FFCP PHASE2:Mm9::chr4:125978325..125978339,-#_0a802cd1389d808af7e5a94a5be398c9 | p@chr4:125978325..125978339, - |
| 1.49e-47 | FFCP PHASE2:Mm9::chr7:133512935..133512936,-#_0a802cd1389d808af7e5a94a5be398c9 | p8@Lat |
| 1.49e-47 | FFCP PHASE2:Mm9::chr6:41483146..41483158,+#_0a802cd1389d808af7e5a94a5be398c9 | p6@uc009bpa.1 |
| 1.49e-47 | FFCP PHASE1:Mm9::chr7:133512935..133512936,-#_0a802cd1389d808af7e5a94a5be398c9 | p8@Lat |
| 1.49e-47 | FFCP PHASE1:Mm9::chr4:125978325..125978339,-#_0a802cd1389d808af7e5a94a5be398c9 | p@chr4:125978325..125978339, - |
| 1.49e-47 | FFCP PHASE1:Mm9::chr6:41483146..41483158,+#_0a802cd1389d808af7e5a94a5be398c9 | p6@uc009bpa.1 |
| 1.52e-47 | FFCP PHASE1:Mm9::chr6:40996879..40996890,+#_c8fcb6c6b3fa4df9aae3a1972a80d46e | p5@uc009bnp.1, p5@uc012eki.1 |
| 1.52e-47 | FFCP PHASE2:Mm9::chr6:40996879..40996890,+#_c8fcb6c6b3fa4df9aae3a1972a80d46e | p5@uc009bnp.1, p5@uc012eki.1 |
| 1.6e-47 | FFCP PHASE2:Mm9::chr6:41492643..41492662,+#_1f27b30c87f148f4c3b6a8c143756d72 | p@chr6:41492643..41492662, + |
| 1.6e-47 | FFCP PHASE1:Mm9::chr6:41492643..41492662,+#_1f27b30c87f148f4c3b6a8c143756d72 | p@chr6:41492643..41492662, + |
| 1.9e-47 | FFCP PHASE1:Mm9::chr6:41492605..41492621,+#_9eed44d9ad8d66b99c33e54bec3d1764 | p@chr6:41492605..41492621, + |
| 1.9e-47 | FFCP PHASE2:Mm9::chr6:41492605..41492621,+#_9eed44d9ad8d66b99c33e54bec3d1764 | p@chr6:41492605..41492621, + |
| 1.49e-46 | FFCP PHASE1:Mm9::chr19:10904535..10904553,-#_d9ede8f053ec35dbbee23867683ba1cb | p2@Cd6 |
| 1.49e-46 | FFCP PHASE2:Mm9::chr19:10904535..10904553,-#_d9ede8f053ec35dbbee23867683ba1cb | p2@Cd6 |
| 1.59e-46 | FFCP PHASE2:Mm9::chr11:52075039..52075066,+#_5c17ebc8827aeb3893c6d24411a6eafd | p@chr11:52075039..52075066, + |
| 1.59e-46 | FFCP PHASE1:Mm9::chr11:52075039..52075066,+#_5c17ebc8827aeb3893c6d24411a6eafd | p@chr11:52075039..52075066, + |
