DOID:3095: Difference between revisions
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|name=germ cell and embryonal cancer | |name=germ cell and embryonal cancer | ||
|namespace=disease_ontology | |namespace=disease_ontology | ||
|def="A germ cell cancer that is derived_from a mixture of germs cells and embryonal cells." [url:http | |def="A germ cell cancer that is derived_from a mixture of germs cells and embryonal cells." [url:http://en.wikipedia.org/wiki/Germ_cell] | ||
|xref=MSH:D009373;;UMLS_CUI:C0027658 | |xref=MSH:D009373;;UMLS_CUI:C0027658 | ||
|is_a=DOID:2994 | |is_a=DOID:2994 | ||
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|obo_creation_date= | |obo_creation_date= | ||
|subset= | |subset= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
Revision as of 16:32, 26 June 2012
| Name: | germ cell and embryonal cancer | ||
|---|---|---|---|
| Namespace: | disease_ontology | ||
| Definition: | "A germ cell cancer that is derived_from a mixture of germs cells and embryonal cells." [url:http://en.wikipedia.org/wiki/Germ_cell] | ||
| Xrefs: |
| ||
| Synonyms: | "germ cell and embryonal neoplasm" RELATED [] |
Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | DOID:2994(germ cell cancer) |
|---|
Children
| is a: | FF:10590-108D5 (testicular germ cell embryonal carcinoma cell line:NEC8),FF:10591-108D6 (testicular germ cell embryonal carcinoma cell line:NEC14),FF:10593-108D8 (testicular germ cell embryonal carcinoma cell line:NEC15),FF:10786-110H3 (testicular germ cell embryonal carcinoma cell line:ITO-II),DOID:171 (neuroectodermal tumor),DOID:3307 (teratoma) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples
Human (Homo sapiens)
- 10423-106C9 (choriocarcinoma cell line:BeWo)
- 10458-106G8
- 10460-106H1
- 10461-106H2
- 10480-107A3
- 10507-107D3
- 10508-107D4 (neuroblastoma cell line:CHP-134)
- 10538-107G7
- 10539-107G8 (neuroblastoma cell line:NB-1)
- 10554-107I5
... further results Mouse (Mus musculus)
- 10423-106C9 (choriocarcinoma cell line:BeWo)
- 10458-106G8
- 10460-106H1
- 10461-106H2
- 10480-107A3
- 10507-107D3
- 10508-107D4 (neuroblastoma cell line:CHP-134)
- 10538-107G7
- 10539-107G8 (neuroblastoma cell line:NB-1)
- 10554-107I5
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:3095 (germ cell and embryonal cancer), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.32e-71 | FFCP PHASE1:Hg19::chr2:218875465..218875482,-#_196856cbe785a34018e01dee434966b2 | p@chr2:218875465..218875482, - |
| 2.32e-71 | FFCP PHASE2:Hg19::chr2:218875465..218875482,-#_196856cbe785a34018e01dee434966b2 | p@chr2:218875465..218875482, - |
| 7.16e-55 | FFCP PHASE2:Hg19::chr12:7863680..7863695,+#_9684b00420917aad306c11fc92d7cb80 | p3@DPPA3 |
| 7.16e-55 | FFCP PHASE1:Hg19::chr12:7863680..7863695,+#_9684b00420917aad306c11fc92d7cb80 | p3@DPPA3 |
| 7.16e-55 | FFCP PHASE1:Hg19::chr2:218875447..218875463,-#_9684b00420917aad306c11fc92d7cb80 | p@chr2:218875447..218875463, - |
| 7.16e-55 | FFCP PHASE2:Hg19::chr2:218875447..218875463,-#_9684b00420917aad306c11fc92d7cb80 | p@chr2:218875447..218875463, - |
| 6.24e-54 | FFCP PHASE1:Hg19::chr8:12808720..12808732,+#_50495cb259de7313ea7000165dd04810 | p19@KIAA1456 |
| 6.24e-54 | FFCP PHASE2:Hg19::chr8:12808720..12808732,+#_50495cb259de7313ea7000165dd04810 | p19@KIAA1456 |
| 6.24e-54 | FFCP PHASE1:Hg19::chr13:31590717..31590730,-#_50495cb259de7313ea7000165dd04810 | p@chr13:31590717..31590730, - |
| 6.24e-54 | FFCP PHASE2:Hg19::chr13:31590717..31590730,-#_50495cb259de7313ea7000165dd04810 | p@chr13:31590717..31590730, - |
| 5.21e-52 | FFCP PHASE2:Hg19::chr12:7864063..7864074,+#_d48b1ce421275662d8b863323e1cf81d | p2@DPPA3 |
| 5.21e-52 | FFCP PHASE1:Hg19::chr12:7864063..7864074,+#_d48b1ce421275662d8b863323e1cf81d | p2@DPPA3 |
| 2.88e-46 | FFCP PHASE1:Hg19::chr4:165953147..165953161,+#_3efff86990685a0ec2e8f31ebca3a8cf | p3@TRIM60 |
| 2.88e-46 | FFCP PHASE2:Hg19::chr4:165953147..165953161,+#_3efff86990685a0ec2e8f31ebca3a8cf | p3@TRIM60 |
| 3.12e-46 | FFCP PHASE1:Hg19::chr3:5932149..5932178,+#_ee8d7106f0835fe49f2f6e372a2ccba7 | p@chr3:5932149..5932178, + |
| 3.12e-46 | FFCP PHASE2:Hg19::chr3:5932149..5932178,+#_ee8d7106f0835fe49f2f6e372a2ccba7 | p@chr3:5932149..5932178, + |
| 3.12e-46 | FFCP PHASE1:Hg19::chrX:51361761..51361770,-#_ee8d7106f0835fe49f2f6e372a2ccba7 | p2@ENST00000417339 |
| 3.12e-46 | FFCP PHASE2:Hg19::chrX:51361761..51361770,-#_ee8d7106f0835fe49f2f6e372a2ccba7 | p2@ENST00000417339 |
| 3.37e-46 | FFCP PHASE1:Hg19::chr20:4228201..4228214,+#_f230e3494bd9a0f5b07607871d9e2a83 | p@chr20:4228201..4228214, + |
| 3.37e-46 | FFCP PHASE2:Hg19::chr20:4228201..4228214,+#_f230e3494bd9a0f5b07607871d9e2a83 | p@chr20:4228201..4228214, + |
| 3.37e-46 | FFCP PHASE2:Hg19::chr21:45681768..45681773,-#_f230e3494bd9a0f5b07607871d9e2a83 | p4@DNMT3L |
| 3.37e-46 | FFCP PHASE1:Hg19::chr21:45681768..45681773,-#_f230e3494bd9a0f5b07607871d9e2a83 | p4@DNMT3L |
| 3.65e-46 | FFCP PHASE2:Hg19::chr9:15883095..15883109,+#_1b942a63ff30fc81c2d43961190487c6 | p@chr9:15883095..15883109, + |
| 3.65e-46 | FFCP PHASE1:Hg19::chr9:15883095..15883109,+#_1b942a63ff30fc81c2d43961190487c6 | p@chr9:15883095..15883109, + |
| 3.65e-46 | FFCP PHASE2:Hg19::chr20:4228155..4228166,+#_1b942a63ff30fc81c2d43961190487c6 | p@chr20:4228155..4228166, + |
| 3.65e-46 | FFCP PHASE1:Hg19::chr20:4228155..4228166,+#_1b942a63ff30fc81c2d43961190487c6 | p@chr20:4228155..4228166, + |
| 3.95e-46 | FFCP PHASE2:Hg19::chr9:15883050..15883085,+#_be2aa6fc998329401e62b3751d9776e4 | p@chr9:15883050..15883085, + |
| 3.95e-46 | FFCP PHASE1:Hg19::chr9:15883050..15883085,+#_be2aa6fc998329401e62b3751d9776e4 | p@chr9:15883050..15883085, + |
| 3.09e-45 | FFCP PHASE2:Hg19::chr2:218876066..218876078,-#_4be113b14f99a964bb256c967baa6fb8 | p@chr2:218876066..218876078, - |
| 3.09e-45 | FFCP PHASE1:Hg19::chr11:83436107..83436115,-#_4be113b14f99a964bb256c967baa6fb8 | p46@DLG2 |
| 3.09e-45 | FFCP PHASE1:Hg19::chr17:31618260..31618271,+#_4be113b14f99a964bb256c967baa6fb8 | p@chr17:31618260..31618271, + |
| 3.09e-45 | FFCP PHASE2:Hg19::chr19:50016671..50016675,+#_4be113b14f99a964bb256c967baa6fb8 | p22@FCGRT |
| 3.09e-45 | FFCP PHASE2:Hg19::chr17:31618260..31618271,+#_4be113b14f99a964bb256c967baa6fb8 | p@chr17:31618260..31618271, + |
| 3.09e-45 | FFCP PHASE2:Hg19::chr3:8407443..8407453,-#_4be113b14f99a964bb256c967baa6fb8 | p@chr3:8407443..8407453, - |
| 3.09e-45 | FFCP PHASE1:Hg19::chr19:50016671..50016675,+#_4be113b14f99a964bb256c967baa6fb8 | p22@FCGRT |
| 3.09e-45 | FFCP PHASE1:Hg19::chr3:8407443..8407453,-#_4be113b14f99a964bb256c967baa6fb8 | p@chr3:8407443..8407453, - |
| 3.09e-45 | FFCP PHASE2:Hg19::chr1:155804376..155804383,-#_4be113b14f99a964bb256c967baa6fb8 | p@chr1:155804376..155804383, - |
| 3.09e-45 | FFCP PHASE1:Hg19::chr5:133764015..133764029,+#_4be113b14f99a964bb256c967baa6fb8 | p@chr5:133764015..133764029, + |
| 3.09e-45 | FFCP PHASE2:Hg19::chr11:83436107..83436115,-#_4be113b14f99a964bb256c967baa6fb8 | p46@DLG2 |
| 3.09e-45 | FFCP PHASE1:Hg19::chr11:18665025..18665064,+#_4be113b14f99a964bb256c967baa6fb8 | p@chr11:18665025..18665064, + |
| 3.09e-45 | FFCP PHASE1:Hg19::chr1:155804376..155804383,-#_4be113b14f99a964bb256c967baa6fb8 | p@chr1:155804376..155804383, - |
| 3.09e-45 | FFCP PHASE2:Hg19::chr12:8983864..8983875,-#_4be113b14f99a964bb256c967baa6fb8 | p2@A2ML1-AS1 |
| 3.09e-45 | FFCP PHASE2:Hg19::chr5:133764015..133764029,+#_4be113b14f99a964bb256c967baa6fb8 | p@chr5:133764015..133764029, + |
| 3.09e-45 | FFCP PHASE1:Hg19::chr1:27385778..27385789,+#_4be113b14f99a964bb256c967baa6fb8 | p@chr1:27385778..27385789, + |
| 3.09e-45 | FFCP PHASE1:Hg19::chr12:8983864..8983875,-#_4be113b14f99a964bb256c967baa6fb8 | p2@A2ML1-AS1 |
| 3.09e-45 | FFCP PHASE2:Hg19::chr1:27385778..27385789,+#_4be113b14f99a964bb256c967baa6fb8 | p@chr1:27385778..27385789, + |
| 3.09e-45 | FFCP PHASE2:Hg19::chr11:18665025..18665064,+#_4be113b14f99a964bb256c967baa6fb8 | p@chr11:18665025..18665064, + |
| 3.09e-45 | FFCP PHASE1:Hg19::chr2:218876066..218876078,-#_4be113b14f99a964bb256c967baa6fb8 | p@chr2:218876066..218876078, - |
| 6.61e-44 | FFCP PHASE2:Hg19::chr21:45681737..45681760,-#_150616f2c68123c48d7926a72a3662a6 | p2@DNMT3L |
| 6.61e-44 | FFCP PHASE1:Hg19::chr21:45681737..45681760,-#_150616f2c68123c48d7926a72a3662a6 | p2@DNMT3L |
| 1.63e-40 | FFCP PHASE1:Hg19::chr1:60314016..60314043,+#_c076f90fc260939ad3cdbad776061897 | p@chr1:60314016..60314043, + |
| 1.63e-40 | FFCP PHASE1:Hg19::chr8:12808701..12808712,+#_c076f90fc260939ad3cdbad776061897 | p16@KIAA1456 |
| 1.63e-40 | FFCP PHASE2:Hg19::chr1:60314016..60314043,+#_c076f90fc260939ad3cdbad776061897 | p@chr1:60314016..60314043, + |
| 1.63e-40 | FFCP PHASE2:Hg19::chr8:12808701..12808712,+#_c076f90fc260939ad3cdbad776061897 | p16@KIAA1456 |
| 1.87e-40 | FFCP PHASE2:Hg19::chr2:230804505..230804520,-#_2bae812bba9c016377d02a1f63bdda5a | p@chr2:230804505..230804520, - |
| 1.87e-40 | FFCP PHASE1:Hg19::chr2:230804505..230804520,-#_2bae812bba9c016377d02a1f63bdda5a | p@chr2:230804505..230804520, - |
| 5.93e-40 | FFCP PHASE2:Hg19::chr21:45681774..45681821,-#_4fe6e9a18ce542a2b96c571fb125aaea | p1@DNMT3L |
| 5.93e-40 | FFCP PHASE1:Hg19::chr21:45681774..45681821,-#_4fe6e9a18ce542a2b96c571fb125aaea | p1@DNMT3L |
| 7.05e-38 | FFCP PHASE1:Hg19::chr2:207068264..207068271,+#_46d7de680486c4edf504f12656a99899 | p@chr2:207068264..207068271, + |
| 7.05e-38 | FFCP PHASE2:Hg19::chr2:207068264..207068271,+#_46d7de680486c4edf504f12656a99899 | p@chr2:207068264..207068271, + |
| 8.52e-38 | FFCP PHASE1:Hg19::chr12:8983894..8983910,-#_17e8ab6e793acb3652556dfdfd1022d6 | p1@A2ML1-AS1 |
| 8.52e-38 | FFCP PHASE1:Hg19::chr12:4128088..4128115,+#_17e8ab6e793acb3652556dfdfd1022d6 | p@chr12:4128088..4128115, + |
| 8.52e-38 | FFCP PHASE2:Hg19::chrX:19141065..19141080,-#_17e8ab6e793acb3652556dfdfd1022d6 | p3@GPR64 |
| 8.52e-38 | FFCP PHASE1:Hg19::chrX:19141065..19141080,-#_17e8ab6e793acb3652556dfdfd1022d6 | p3@GPR64 |
| 8.52e-38 | FFCP PHASE2:Hg19::chr5:36596685..36596706,+#_17e8ab6e793acb3652556dfdfd1022d6 | p@chr5:36596685..36596706, + |
| 8.52e-38 | FFCP PHASE1:Hg19::chr5:36596685..36596706,+#_17e8ab6e793acb3652556dfdfd1022d6 | p@chr5:36596685..36596706, + |
| 8.52e-38 | FFCP PHASE2:Hg19::chr12:4128088..4128115,+#_17e8ab6e793acb3652556dfdfd1022d6 | p@chr12:4128088..4128115, + |
| 8.52e-38 | FFCP PHASE2:Hg19::chr12:8983894..8983910,-#_17e8ab6e793acb3652556dfdfd1022d6 | p1@A2ML1-AS1 |
| 9.2e-38 | FFCP PHASE2:Hg19::chr2:216410925..216410936,+#_5d7c79602fdf362eece5f42c0e16ff24 | p1@ENST00000417485 |
| 9.2e-38 | FFCP PHASE2:Hg19::chr19:49714057..49714062,+#_5d7c79602fdf362eece5f42c0e16ff24 | p@chr19:49714057..49714062, + |
| 9.2e-38 | FFCP PHASE1:Hg19::chr19:49714057..49714062,+#_5d7c79602fdf362eece5f42c0e16ff24 | p@chr19:49714057..49714062, + |
| 9.2e-38 | FFCP PHASE1:Hg19::chr4:165953174..165953189,+#_5d7c79602fdf362eece5f42c0e16ff24 | p1@TRIM60 |
| 9.2e-38 | FFCP PHASE1:Hg19::chr6:123318989..123318999,+#_5d7c79602fdf362eece5f42c0e16ff24 | p@chr6:123318989..123318999, + |
| 9.2e-38 | FFCP PHASE2:Hg19::chr4:165953174..165953189,+#_5d7c79602fdf362eece5f42c0e16ff24 | p1@TRIM60 |
| 9.2e-38 | FFCP PHASE2:Hg19::chr6:123318989..123318999,+#_5d7c79602fdf362eece5f42c0e16ff24 | p@chr6:123318989..123318999, + |
| 9.2e-38 | FFCP PHASE2:Hg19::chr8:27046735..27046767,-#_5d7c79602fdf362eece5f42c0e16ff24 | p@chr8:27046735..27046767, - |
| 9.2e-38 | FFCP PHASE1:Hg19::chr8:27046735..27046767,-#_5d7c79602fdf362eece5f42c0e16ff24 | p@chr8:27046735..27046767, - |
| 9.2e-38 | FFCP PHASE1:Hg19::chr2:216410925..216410936,+#_5d7c79602fdf362eece5f42c0e16ff24 | p1@ENST00000417485 |
| 9.92e-38 | FFCP PHASE1:Hg19::chr4:165953213..165953229,+#_e2478132068f7cc036c4213cb6347cdb | p2@TRIM60 |
| 9.92e-38 | FFCP PHASE2:Hg19::chr4:165953213..165953229,+#_e2478132068f7cc036c4213cb6347cdb | p2@TRIM60 |
| 1.07e-37 | FFCP PHASE2:Hg19::chr9:15883133..15883144,+#_8ce24e5c4e3df6f8d4eed6aa77fbc8ce | p@chr9:15883133..15883144, + |
| 1.07e-37 | FFCP PHASE1:Hg19::chr9:15883133..15883144,+#_8ce24e5c4e3df6f8d4eed6aa77fbc8ce | p@chr9:15883133..15883144, + |
| 1.07e-37 | FFCP PHASE2:Hg19::chr3:99982282..99982305,+#_8ce24e5c4e3df6f8d4eed6aa77fbc8ce | p@chr3:99982282..99982305, + |
| 1.07e-37 | FFCP PHASE1:Hg19::chr3:99982282..99982305,+#_8ce24e5c4e3df6f8d4eed6aa77fbc8ce | p@chr3:99982282..99982305, + |
| 1.07e-37 | FFCP PHASE2:Hg19::chr3:9895464..9895477,-#_8ce24e5c4e3df6f8d4eed6aa77fbc8ce | p@chr3:9895464..9895477, - |
| 1.07e-37 | FFCP PHASE1:Hg19::chr3:9895464..9895477,-#_8ce24e5c4e3df6f8d4eed6aa77fbc8ce | p@chr3:9895464..9895477, - |
| 1.16e-37 | FFCP PHASE2:Hg19::chr4:8068231..8068247,+#_0ab722df1c7737afd63de1868dc439b5 | p1@ENST00000510640 |
| 1.16e-37 | FFCP PHASE1:Hg19::chr4:8068231..8068247,+#_0ab722df1c7737afd63de1868dc439b5 | p1@ENST00000510640 |
| 1.49e-36 | FFCP PHASE2:Hg19::chr2:71755221..71755234,+#_299b237c91a58560df578a261ec29545 | p@chr2:71755221..71755234, + |
| 1.49e-36 | FFCP PHASE2:Hg19::chr4:779349..779383,+#_299b237c91a58560df578a261ec29545 | p@chr4:779349..779383, + |
| 1.49e-36 | FFCP PHASE2:Hg19::chr16:24506473..24506474,-#_299b237c91a58560df578a261ec29545 | p2@BX538205 |
| 1.49e-36 | FFCP PHASE2:Hg19::chr19:51883915..51883934,-#_299b237c91a58560df578a261ec29545 | p@chr19:51883915..51883934, - |
| 1.49e-36 | FFCP PHASE1:Hg19::chr10:71812102..71812136,+#_299b237c91a58560df578a261ec29545 | p3@H2AFY2 |
| 1.49e-36 | FFCP PHASE1:Hg19::chr2:71755221..71755234,+#_299b237c91a58560df578a261ec29545 | p@chr2:71755221..71755234, + |
| 1.49e-36 | FFCP PHASE2:Hg19::chr6:73935150..73935162,-#_299b237c91a58560df578a261ec29545 | p3@KHDC1L |
| 1.49e-36 | FFCP PHASE1:Hg19::chr10:48320905..48320918,+#_299b237c91a58560df578a261ec29545 | p@chr10:48320905..48320918, + |
| 1.49e-36 | FFCP PHASE1:Hg19::chr4:779349..779383,+#_299b237c91a58560df578a261ec29545 | p@chr4:779349..779383, + |
| 1.49e-36 | FFCP PHASE2:Hg19::chr16:8627066..8627076,+#_299b237c91a58560df578a261ec29545 | p@chr16:8627066..8627076, + |
| 1.49e-36 | FFCP PHASE1:Hg19::chr19:51883915..51883934,-#_299b237c91a58560df578a261ec29545 | p@chr19:51883915..51883934, - |
| 1.49e-36 | FFCP PHASE1:Hg19::chr12:8045030..8045044,+#_299b237c91a58560df578a261ec29545 | p5@NANOGP1 |
