FFCP PHASE1:Mm9::chr8:46593122..46593161,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=234214 | |EntrezGene=234214 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=13 | |||
|TSSclassifier=NA | |||
|UniProt=D3Z080,Q3UTJ2,E9Q8K9,B9EKP8,B7ZWM6 | |UniProt=D3Z080,Q3UTJ2,E9Q8K9,B9EKP8,B7ZWM6 | ||
|association_with_transcript=0bp_to_ENSMUST00000037085,ENSMUST00000067065,ENSMUST00000067107,ENSMUST00000098788,ENSMUST00000124544,ENSMUST00000138049,NM_001205219,NM_172752,uc009lpb.1,uc009lpc.1,uc009lpd.1,uc012gde.1,uc012gdf.1_5end | |association_with_transcript=0bp_to_ENSMUST00000037085,ENSMUST00000067065,ENSMUST00000067107,ENSMUST00000098788,ENSMUST00000124544,ENSMUST00000138049,NM_001205219,NM_172752,uc009lpb.1,uc009lpc.1,uc009lpd.1,uc012gde.1,uc012gdf.1_5end | ||
|cluster_id=chr8:46593122..46593161,+ | |||
|description=CAGE_peak_4_at_Sorbs2_5end | |description=CAGE_peak_4_at_Sorbs2_5end | ||
|id=chr8:46593122..46593161,+ | |id=chr8:46593122..46593161,+ | ||
|ontology_enrichment_celltype=CL:0000117!7.21e-12!23;CL:0000337!7.21e-12!23;CL:0000540!1.35e-10!33;CL:0000047!1.35e-10!33;CL:0000031!1.35e-10!33;CL:0000404!1.35e-10!33;CL:0000221!1.69e-09!44;CL:0000133!1.69e-09!44;CL:0002319!4.34e-09!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.63e-13,23;CL:0000337,2.63e-13,23;CL:0000540,1.43e-10,33;CL:0000047,1.43e-10,33;CL:0000031,1.43e-10,33;CL:0000404,1.43e-10,33;CL:0000221,1.94e-08,44;CL:0000133,1.94e-08,44;CL:0002319,5.18e-08,43;CL:0000393,3.38e-07,39;CL:0000211,3.38e-07,39 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!3.65e-24!102;UBERON:0000924!3.65e-24!102;UBERON:0006601!3.65e-24!102;UBERON:0002346!5.53e-24!71;UBERON:0003075!5.53e-24!71;UBERON:0007284!5.53e-24!71;UBERON:0001017!1.27e-22!73;UBERON:0005743!1.27e-22!73;UBERON:0000033!2.49e-22!63;UBERON:0003056!4.02e-22!49;UBERON:0000073!1.50e-21!75;UBERON:0001016!1.50e-21!75;UBERON:0001049!5.82e-20!52;UBERON:0005068!5.82e-20!52;UBERON:0006241!5.82e-20!52;UBERON:0007135!5.82e-20!52;UBERON:0002020!1.93e-19!34;UBERON:0000955!5.51e-19!50;UBERON:0006238!5.51e-19!50;UBERON:0002616!1.99e-18!49;UBERON:0003080!7.63e-18!40;UBERON:0002780!2.39e-17!39;UBERON:0001890!2.39e-17!39;UBERON:0006240!2.39e-17!39;UBERON:0002791!2.43e-17!29;UBERON:0003528!2.43e-17!29;UBERON:0001893!2.43e-17!29;UBERON:0000956!9.81e-14!21;UBERON:0001869!9.81e-14!21;UBERON:0000203!9.81e-14!21;UBERON:0002619!3.19e-11!17;UBERON:0000153!2.24e-09!94;UBERON:0000468!1.92e-08!333;UBERON:0007811!3.24e-08!86;UBERON:0002021!1.67e-07!10;UBERON:0000411!1.67e-07!10;UBERON:0001950!1.67e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.07e-26,64;UBERON:0003075,1.07e-26,64;UBERON:0007284,1.07e-26,64;UBERON:0010371,3.02e-25,73;UBERON:0003056,3.35e-24,49;UBERON:0004121,1.59e-23,95;UBERON:0000924,1.59e-23,95;UBERON:0006601,1.59e-23,95;UBERON:0000073,1.83e-22,54;UBERON:0001017,3.09e-22,73;UBERON:0002020,6.11e-22,34;UBERON:0001049,1.30e-21,52;UBERON:0005068,1.30e-21,52;UBERON:0006241,1.30e-21,52;UBERON:0007135,1.30e-21,52;UBERON:0001016,6.80e-21,75;UBERON:0003528,1.51e-19,29;UBERON:0002791,1.51e-19,29;UBERON:0001893,1.51e-19,29;UBERON:0003080,2.41e-19,40;UBERON:0000955,3.39e-19,47;UBERON:0006238,3.39e-19,47;UBERON:0002780,8.77e-19,39;UBERON:0001890,8.77e-19,39;UBERON:0006240,8.77e-19,39;UBERON:0002616,1.41e-18,46;UBERON:0010314,2.49e-16,92;UBERON:0000956,1.96e-15,21;UBERON:0001869,1.96e-15,21;UBERON:0000203,1.96e-15,21;UBERON:0002619,1.43e-12,17;UBERON:0002021,2.46e-08,10;UBERON:0000411,2.46e-08,10;UBERON:0001950,2.46e-08,10 | |||
|phase1_expression=11.8510146857548,0,0.909998478779072,0,0,0,0.467225281191051,0,0,0,0,0,0,0,0,2.02475267389826,0,0.157731082679119,0,0.42438965179803,6.97354979238772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436050312760893,12.7417985985994,14.1933826324227,0.979904951377538,1.43752564364972,0,0,0,0,0,0,36.8215958764468,39.1453324661304,26.6209189472595,0.677689064138264,0,0,0,0,0.898800331555214,3.07374644257244,42.8238098834013,25.1111045296945,32.1797190867615,8.85518051651791,9.93908434282261,42.0143441307292,40.6384797117322,32.1726575313507,7.70811166995721,15.3224805702225,16.4358990584181,37.5875920031052,38.6077856002169,44.7985498678814,4.4669279840221,6.75315132038016,7.94550888439413,21.2132581541041,25.4845308630394,35.975093044283,0.075726193333184,0.0755715601067855,2.6087803983151,0,0,0,0,0,1.12355536105401,0,0,0,17.8871143116384,0,0,0,0,0,0,1.25602267690966,0.776813650941515,27.7586800051222,0.173485326766136,0.304465478312141,0.461230994512117,1.95939432718409,3.05730638552832,7.6656620711102,2.22475470960936,0.289198713839823,0,0.485300549842228,0.220841518460394,0.484875253135222,1.86391761218122,3.51336956413857,4.1889341362691,0.255457055208591,0,0,0,19.472783122627,52.612569324142,40.5863557324552,46.0634448509533,46.0287823194595,27.0124457927428,33.5839414550258,14.6648683944455,6.71797641294502,20.4705434331277,2.52530227063769,17.0457780281142,18.1622662502444,21.0672691872259,23.5099515823715,27.0785266622285,36.3842965608973,25.6742725293657,15.0047955028629,1.07783996466421,5.10586416453112,15.4836989264275,7.23345917010997,11.1218899690239,3.83077383174383,4.52720700097476,5.17489093728082,0,0,0,0.621377317606506,1.40715635988658,0.180062061461015,1.42046841351126,0.590292695242212,0.308534225774757,0.465067889500816,0.804820204198858,1.05088808130453,0.16455984991348,0,0.0810688095458557,0.292399974850665,0,0.134206418760372,27.3376933133365,33.7527128604053,0,0.264450566663544,1.49301775374664,1.85789337488351,2.06187938115349,2.01683524623343,1.11189021922435,1.14135375667535,0,0.164698954724011,1.25667604400135,0.397912944082302,0.38992817423824,0.898819408654221,0.648414149624083,0.199141273254367,0.189667900953082,0.342745537829186,1.1270773567308,0.407302655690628,0.581857461502877,0.841629838683823,0.758838445491087,0.590440591918409,0,0.370191491765402,0,0.333690211432188,0,0,0,0,0,0,0.162135226775035,0,0,0,0,0.252578877947112,0,0,0.184753190166605,0.189491411770485,0.162964976442026,0.169745085775188,0,0,0,0.195133647857799,0.157635144106191,0,0.318909537314974,0.163863314715738,0.172684981865896,0,0,0,0,2.75936746304733,12.5229460190478,13.1277088983268,0,0,2.52406575533005,3.90438744296638,2.36965737506079,0.477937595905104,0.668396022247182,1.41538265394416,1.61924280669958,1.46127928955656,0.790575555893047,25.3843839973228,10.6455063906201,8.54714897602825,13.6825045857004,0.824850614862677,0,0.971122544619926,0.302323556964751,0.188605079755898,0,0.614870295887855,1.03371317267288,0.363533729477506,0.356497378384721,0,0,0,0.340439605753788,10.443543453816,2.8458910432206,2.35770738534752,4.78818630834139,3.21063871683727,3.29098041204242,0.304464949114599,8.91752490642099,7.62595455109753,2.64634077665954,2.80306630000516,0.807322133479528,0.603129249281559,1.19372344003136,1.96969079694074,0.291480836629851,13.9068976507882,2.05045056957423,4.12773735926445,9.4449208958553,5.65105371014073,5.19438065339896,5.49067615695654,0,0,0,0,3.16335993581135,3.45643094115643,0.972048067396211,1.46361807210128,0.87345025498471,0.809186078308924,0.909188012978695,0.26175594198403,0.129614973291793,0,0,1.34564891439581,2.48187735685646,5.05573089694524,5.55387240954244,6.25137664315879,6.80671984145373,4.9477666240701,1.8874681996628,1.20792060413003,0.288030006257865,0,0,0,0,0,0,0.240390899039938,0,0,0.0762068066549998,0,0,0,0,0,0,0,0,0.965947970160952,3.19060208267009,0.183151624267265,0,7.02200945649509,24.8490810751509,36.365693684067,28.0718801585304,24.4031518928036,42.4751162257798,37.769694869485,29.0259675099676,38.2773022740587,52.1113770331835,48.1517089929193,5.91587881229807,35.9122386060928,24.4149056228412,14.3432963070293,8.38452650511929,4.04455718590031,11.1123363900808,9.68364769022803,12.8367683836726,12.1294661646623,10.3926512954998,13.9583492625696,12.3606789860245,11.0763513660424,11.7742711359007,10.0021675169445,12.1678542242098,9.64546102318525,14.0109206273124,11.481515770483,9.94320831917705,9.9386451449229,10.4911923576821,8.43009216467505,9.78737556319438,9.98452373121783,12.6220301282213,11.3119975918272,11.1359373353607,15.1508413347589,7.71127617807132,7.88035859004508,9.00308294973317,9.76102099471586,11.1885834369062,23.7320049041049,5.6143586026898,7.52048689169044,4.01705497344571,1.76473135295612,2.55054619182464 | |phase1_expression=11.8510146857548,0,0.909998478779072,0,0,0,0.467225281191051,0,0,0,0,0,0,0,0,2.02475267389826,0,0.157731082679119,0,0.42438965179803,6.97354979238772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436050312760893,12.7417985985994,14.1933826324227,0.979904951377538,1.43752564364972,0,0,0,0,0,0,36.8215958764468,39.1453324661304,26.6209189472595,0.677689064138264,0,0,0,0,0.898800331555214,3.07374644257244,42.8238098834013,25.1111045296945,32.1797190867615,8.85518051651791,9.93908434282261,42.0143441307292,40.6384797117322,32.1726575313507,7.70811166995721,15.3224805702225,16.4358990584181,37.5875920031052,38.6077856002169,44.7985498678814,4.4669279840221,6.75315132038016,7.94550888439413,21.2132581541041,25.4845308630394,35.975093044283,0.075726193333184,0.0755715601067855,2.6087803983151,0,0,0,0,0,1.12355536105401,0,0,0,17.8871143116384,0,0,0,0,0,0,1.25602267690966,0.776813650941515,27.7586800051222,0.173485326766136,0.304465478312141,0.461230994512117,1.95939432718409,3.05730638552832,7.6656620711102,2.22475470960936,0.289198713839823,0,0.485300549842228,0.220841518460394,0.484875253135222,1.86391761218122,3.51336956413857,4.1889341362691,0.255457055208591,0,0,0,19.472783122627,52.612569324142,40.5863557324552,46.0634448509533,46.0287823194595,27.0124457927428,33.5839414550258,14.6648683944455,6.71797641294502,20.4705434331277,2.52530227063769,17.0457780281142,18.1622662502444,21.0672691872259,23.5099515823715,27.0785266622285,36.3842965608973,25.6742725293657,15.0047955028629,1.07783996466421,5.10586416453112,15.4836989264275,7.23345917010997,11.1218899690239,3.83077383174383,4.52720700097476,5.17489093728082,0,0,0,0.621377317606506,1.40715635988658,0.180062061461015,1.42046841351126,0.590292695242212,0.308534225774757,0.465067889500816,0.804820204198858,1.05088808130453,0.16455984991348,0,0.0810688095458557,0.292399974850665,0,0.134206418760372,27.3376933133365,33.7527128604053,0,0.264450566663544,1.49301775374664,1.85789337488351,2.06187938115349,2.01683524623343,1.11189021922435,1.14135375667535,0,0.164698954724011,1.25667604400135,0.397912944082302,0.38992817423824,0.898819408654221,0.648414149624083,0.199141273254367,0.189667900953082,0.342745537829186,1.1270773567308,0.407302655690628,0.581857461502877,0.841629838683823,0.758838445491087,0.590440591918409,0,0.370191491765402,0,0.333690211432188,0,0,0,0,0,0,0.162135226775035,0,0,0,0,0.252578877947112,0,0,0.184753190166605,0.189491411770485,0.162964976442026,0.169745085775188,0,0,0,0.195133647857799,0.157635144106191,0,0.318909537314974,0.163863314715738,0.172684981865896,0,0,0,0,2.75936746304733,12.5229460190478,13.1277088983268,0,0,2.52406575533005,3.90438744296638,2.36965737506079,0.477937595905104,0.668396022247182,1.41538265394416,1.61924280669958,1.46127928955656,0.790575555893047,25.3843839973228,10.6455063906201,8.54714897602825,13.6825045857004,0.824850614862677,0,0.971122544619926,0.302323556964751,0.188605079755898,0,0.614870295887855,1.03371317267288,0.363533729477506,0.356497378384721,0,0,0,0.340439605753788,10.443543453816,2.8458910432206,2.35770738534752,4.78818630834139,3.21063871683727,3.29098041204242,0.304464949114599,8.91752490642099,7.62595455109753,2.64634077665954,2.80306630000516,0.807322133479528,0.603129249281559,1.19372344003136,1.96969079694074,0.291480836629851,13.9068976507882,2.05045056957423,4.12773735926445,9.4449208958553,5.65105371014073,5.19438065339896,5.49067615695654,0,0,0,0,3.16335993581135,3.45643094115643,0.972048067396211,1.46361807210128,0.87345025498471,0.809186078308924,0.909188012978695,0.26175594198403,0.129614973291793,0,0,1.34564891439581,2.48187735685646,5.05573089694524,5.55387240954244,6.25137664315879,6.80671984145373,4.9477666240701,1.8874681996628,1.20792060413003,0.288030006257865,0,0,0,0,0,0,0.240390899039938,0,0,0.0762068066549998,0,0,0,0,0,0,0,0,0.965947970160952,3.19060208267009,0.183151624267265,0,7.02200945649509,24.8490810751509,36.365693684067,28.0718801585304,24.4031518928036,42.4751162257798,37.769694869485,29.0259675099676,38.2773022740587,52.1113770331835,48.1517089929193,5.91587881229807,35.9122386060928,24.4149056228412,14.3432963070293,8.38452650511929,4.04455718590031,11.1123363900808,9.68364769022803,12.8367683836726,12.1294661646623,10.3926512954998,13.9583492625696,12.3606789860245,11.0763513660424,11.7742711359007,10.0021675169445,12.1678542242098,9.64546102318525,14.0109206273124,11.481515770483,9.94320831917705,9.9386451449229,10.4911923576821,8.43009216467505,9.78737556319438,9.98452373121783,12.6220301282213,11.3119975918272,11.1359373353607,15.1508413347589,7.71127617807132,7.88035859004508,9.00308294973317,9.76102099471586,11.1885834369062,23.7320049041049,5.6143586026898,7.52048689169044,4.01705497344571,1.76473135295612,2.55054619182464 | ||
|short_description=p4@Sorbs2 | |short_description=p4@Sorbs2 | ||
}} | }} |
Latest revision as of 14:00, 25 September 2015
Short description: | p4@Sorbs2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Sorbs2_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | 0bp_to_ENSMUST00000037085, ENSMUST00000067065, ENSMUST00000067107, ENSMUST00000098788, ENSMUST00000124544, ENSMUST00000138049, NM_001205219, NM_172752, uc009lpb.1, uc009lpc.1, uc009lpd.1, uc012gde.1, uc012gdf.1_5end |
EntrezGene: | Sorbs2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.63e-13 | 23 |
neuroblast (sensu Vertebrata) | 2.63e-13 | 23 |
neuron | 1.43e-10 | 33 |
neuronal stem cell | 1.43e-10 | 33 |
neuroblast | 1.43e-10 | 33 |
electrically signaling cell | 1.43e-10 | 33 |
ectodermal cell | 1.94e-08 | 44 |
neurectodermal cell | 1.94e-08 | 44 |
neural cell | 5.18e-08 | 43 |
electrically responsive cell | 3.38e-07 | 39 |
electrically active cell | 3.38e-07 | 39 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 1.07e-26 | 64 |
neural plate | 1.07e-26 | 64 |
presumptive neural plate | 1.07e-26 | 64 |
ecto-epithelium | 3.02e-25 | 73 |
pre-chordal neural plate | 3.35e-24 | 49 |
ectoderm-derived structure | 1.59e-23 | 95 |
ectoderm | 1.59e-23 | 95 |
presumptive ectoderm | 1.59e-23 | 95 |
regional part of nervous system | 1.83e-22 | 54 |
central nervous system | 3.09e-22 | 73 |
gray matter | 6.11e-22 | 34 |
neural tube | 1.30e-21 | 52 |
neural rod | 1.30e-21 | 52 |
future spinal cord | 1.30e-21 | 52 |
neural keel | 1.30e-21 | 52 |
nervous system | 6.80e-21 | 75 |
brain grey matter | 1.51e-19 | 29 |
regional part of telencephalon | 1.51e-19 | 29 |
telencephalon | 1.51e-19 | 29 |
anterior neural tube | 2.41e-19 | 40 |
brain | 3.39e-19 | 47 |
future brain | 3.39e-19 | 47 |
regional part of forebrain | 8.77e-19 | 39 |
forebrain | 8.77e-19 | 39 |
future forebrain | 8.77e-19 | 39 |
regional part of brain | 1.41e-18 | 46 |
structure with developmental contribution from neural crest | 2.49e-16 | 92 |
cerebral cortex | 1.96e-15 | 21 |
cerebral hemisphere | 1.96e-15 | 21 |
pallium | 1.96e-15 | 21 |
regional part of cerebral cortex | 1.43e-12 | 17 |
occipital lobe | 2.46e-08 | 10 |
visual cortex | 2.46e-08 | 10 |
neocortex | 2.46e-08 | 10 |