FFCP PHASE1:Mm9::chr4:84851321..84851399,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=20404 | |EntrezGene=20404 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=Q62420,Q8BXU5 | |UniProt=Q62420,Q8BXU5 | ||
|association_with_transcript=0bp_to_ENSMUST00000030212,ENSMUST00000107189,NM_019535,uc008tlo.1_5end | |association_with_transcript=0bp_to_ENSMUST00000030212,ENSMUST00000107189,NM_019535,uc008tlo.1_5end | ||
|cluster_id=chr4:84851321..84851399,+ | |||
|description=CAGE_peak_1_at_Sh3gl2_5end | |description=CAGE_peak_1_at_Sh3gl2_5end | ||
|id=chr4:84851321..84851399,+ | |id=chr4:84851321..84851399,+ | ||
|ontology_enrichment_celltype=CL:0000117!5.70e-12!23;CL:0000337!5.70e-12!23;CL:0000540!1.42e-08!33;CL:0000047!1.42e-08!33;CL:0000031!1.42e-08!33;CL:0000404!1.42e-08!33 | |ontology_enrichment_celltype=CL:0000117!5.70e-12!23;CL:0000337!5.70e-12!23;CL:0000540!1.42e-08!33;CL:0000047!1.42e-08!33;CL:0000031!1.42e-08!33;CL:0000404!1.42e-08!33 | ||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.89e-12,23;CL:0000337,2.89e-12,23;CL:0000540,8.99e-09,33;CL:0000047,8.99e-09,33;CL:0000031,8.99e-09,33;CL:0000404,8.99e-09,33 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!6.99e-21!52;UBERON:0005068!6.99e-21!52;UBERON:0006241!6.99e-21!52;UBERON:0007135!6.99e-21!52;UBERON:0002346!9.67e-21!71;UBERON:0003075!9.67e-21!71;UBERON:0007284!9.67e-21!71;UBERON:0000033!3.82e-20!63;UBERON:0000955!6.75e-20!50;UBERON:0006238!6.75e-20!50;UBERON:0002616!3.04e-19!49;UBERON:0001017!3.85e-19!73;UBERON:0005743!3.85e-19!73;UBERON:0000073!4.77e-18!75;UBERON:0001016!4.77e-18!75;UBERON:0003056!1.11e-17!49;UBERON:0004121!5.57e-17!102;UBERON:0000924!5.57e-17!102;UBERON:0006601!5.57e-17!102;UBERON:0003080!1.07e-16!40;UBERON:0002020!2.82e-16!34;UBERON:0002780!4.42e-16!39;UBERON:0001890!4.42e-16!39;UBERON:0006240!4.42e-16!39;UBERON:0002791!1.17e-13!29;UBERON:0003528!1.17e-13!29;UBERON:0001893!1.17e-13!29;UBERON:0000956!9.60e-10!21;UBERON:0001869!9.60e-10!21;UBERON:0000203!9.60e-10!21;UBERON:0002021!6.92e-08!10;UBERON:0000411!6.92e-08!10;UBERON:0001950!6.92e-08!10;UBERON:0002619!8.31e-08!17;UBERON:0007811!8.98e-08!86;UBERON:0000468!1.66e-07!333 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.55e-22,54;UBERON:0002346,1.83e-21,64;UBERON:0003075,1.83e-21,64;UBERON:0007284,1.83e-21,64;UBERON:0001049,3.90e-21,52;UBERON:0005068,3.90e-21,52;UBERON:0006241,3.90e-21,52;UBERON:0007135,3.90e-21,52;UBERON:0001017,2.54e-19,73;UBERON:0000955,2.71e-18,47;UBERON:0006238,2.71e-18,47;UBERON:0010371,2.73e-18,73;UBERON:0003056,5.99e-18,49;UBERON:0001016,8.33e-18,75;UBERON:0002616,1.22e-17,46;UBERON:0003080,6.27e-17,40;UBERON:0002020,1.75e-16,34;UBERON:0002780,2.70e-16,39;UBERON:0001890,2.70e-16,39;UBERON:0006240,2.70e-16,39;UBERON:0004121,3.82e-16,95;UBERON:0000924,3.82e-16,95;UBERON:0006601,3.82e-16,95;UBERON:0003528,8.57e-14,29;UBERON:0002791,8.57e-14,29;UBERON:0001893,8.57e-14,29;UBERON:0010314,3.28e-10,92;UBERON:0000956,8.86e-10,21;UBERON:0001869,8.86e-10,21;UBERON:0000203,8.86e-10,21;UBERON:0002021,4.57e-08,10;UBERON:0000411,4.57e-08,10;UBERON:0001950,4.57e-08,10;UBERON:0002619,8.57e-08,17 | |||
|phase1_expression=8.96833543786846,21.9854506812797,22.7499619694768,32.061206398524,33.5600139064053,17.1236857350128,14.4839837169226,0,0,0,0,0,0,0,0,0,0,0,0.137114433605739,0,63.1871645822448,0,0,14.3993180514066,11.4704640533585,10.9104073181854,16.3689558540448,12.7128027284675,21.0925995596575,16.3819584343955,9.3126814475228,0,0,0,16.1756907060714,12.6338330472454,15.1085323634153,0,0,0,0,0,0,0,0,0,0,0.436050312760893,0.878744730937887,0,0.419959264876088,0,0,0,0,0,0,0,48.5559506063035,59.2469896784677,44.3681982454325,1.0165335962074,0.889294796111139,0,0,0,1.79760066311043,1.15265491596466,51.3263580926964,42.5268705744826,46.6921414200068,113.974742777118,99.3908434282261,24.7431414414207,22.3319947472491,32.1726575313507,138.74601005923,190.126446408845,183.867020307723,39.8296588945185,47.6650623168554,35.9430225684164,211.062347245044,123.245011596938,146.686317865738,91.334861496837,88.4128137762429,63.7486104722528,0.302904773332736,0.831287161174641,4.63783181922684,0,0,0.539703191637817,0,0,11.0951091904084,0,0,0,11.8308472612412,0,0,0,3.89683873820185,2.02687892380079,2.52762222507392,13.0169622879728,0,25.8289321972795,4.16364784238726,5.1759131313064,5.99600292865752,7.83757730873637,8.93674174231356,16.2109902815281,0.494389935468748,0.722996784599558,0,0.485300549842228,0,0,13.0474232852686,471.962644782614,472.092877157528,17.1156226989756,0,0,0,251.198902281888,146.857693504779,48.3769255634528,302.801965774946,334.987249102733,217.761870698419,211.724848303424,5.29564692021645,14.8044295026011,64.6970261590207,50.2956035568673,3.6433724029557,7.35686734187113,8.28285797104606,9.0422890701429,21.159351236063,18.7046031615881,24.3624483855295,122.884101101032,1.07783996466421,2.26927296201383,3.69497360744293,2.6303487891309,3.89266148915837,3.48252166522167,1.64625709126355,6.96619933864726,0,0,0,0.414251545071004,0.938104239924385,0.180062061461015,1.18372367792605,0.393528463494808,0.771335564436891,0.465067889500816,0.268273401399619,0.350296027101508,1.15191894939436,0.820837320395476,0.324275238183423,0.438599962275997,0.219550115291051,0.268412837520744,288.307519481418,96.4216217993895,34.0331346473312,14.2803305998314,2.77274725695804,6.0381534683714,9.79392706047909,12.5043785266472,12.008414367623,10.8428606884159,9.96511029243474,11.0348299665087,14.3261069016154,13.3300836267571,13.062593836981,17.0775687644302,12.752144942607,18.3209971394018,6.82804443431094,10.3966146474853,10.1436962105772,10.5898690479563,12.9948166402309,22.0927832654503,24.1563571814663,18.4512684974503,17.1128613347099,20.4839292110189,0,0.166845105716094,0.196558995113203,0.224862112384854,0.202860121388503,0,0.763877555344259,0,0.162135226775035,0.274561413188081,0,0.372140947668503,0.312037673114561,0.757736633841335,0,0,4.0645701836653,2.27389694124582,4.56301934037672,6.45031325945715,2.81628297946203,3.51763140627813,1.19021820443007,0.780534591431195,1.89162172927429,5.09368786192182,4.30527875375215,7.20998584749247,3.7990696010497,5.06271705035291,0,0,0.491764273019036,0.275936746304732,270.688294719417,245.910118470442,0,0.757412781613119,3.78609863299508,5.85658116444958,7.53981892064796,2.86762557543062,1.55959071857676,2.54768877709949,4.45291771842384,7.89090816360542,8.69633111482352,270.552548427162,8.51640511249612,3.91744328067962,5.21238269931443,14.6823409445557,0,6.5550771761845,5.13950046840077,4.71512699389745,2.95301892880773,5.53383266299069,6.46070732920553,6.90714086007261,6.41695281092498,5.37262488490887,3.16255825724996,3.09406629744561,87.4929786787235,8.46287141947158,8.27895576209629,13.2888961719587,20.2167866352192,21.0475204770443,24.517804069716,18.267896946876,1.40803024838226,0,23.8170669899359,10.7176064411962,5.00539722757307,3.37752379597673,2.98430860007841,3.61109979439135,13.4081184849731,271.462642143386,0.170870880797853,0.619160603889667,0,0.188368457004691,0,0.228778173206523,0,0,0,21.0027535963325,2.05618395827738,7.31950081656655,7.34436317588249,12.3362094648537,8.51613998610093,12.6772485601731,17.8531464366726,17.799404054914,20.2199358335197,1.86401793926078,19.1655599152625,11.6622905914303,11.0857188606255,14.1949367491155,11.2369046425626,12.8406655372991,20.8895884789442,41.9258119197519,56.0997492677553,28.5069262574687,19.0099804130191,0,2.8381530140623,4.00572732942826,1.29920822977795,2.14832034800978,0.79472541912506,0.480781798079875,0.295379054349154,0.302899349844443,0.381034033274999,0.403304740547362,0.194915761479505,0.384847366561318,0,6.57518112484113,1.10992976687032,0,0.503653849092235,168.074946808006,8.25802891985201,21.2455884150028,7.28852488868824,31.0974704501925,306.09549869845,296.449452310622,273.844055424032,264.482047626935,280.883833105963,288.560468802866,271.359045093186,276.046897576447,286.839144887002,253.18479244664,2.49089634202024,9.97562183502578,7.17081144167364,11.4260157022098,10.4806581313991,11.5821410323509,17.1129980407244,13.8043488350059,17.9714757371417,15.1618327058278,18.7574681918777,18.485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| |phase1_expression=8.96833543786846,21.9854506812797,22.7499619694768,32.061206398524,33.5600139064053,17.1236857350128,14.4839837169226,0,0,0,0,0,0,0,0,0,0,0,0.137114433605739,0,63.1871645822448,0,0,14.3993180514066,11.4704640533585,10.9104073181854,16.3689558540448,12.7128027284675,21.0925995596575,16.3819584343955,9.3126814475228,0,0,0,16.1756907060714,12.6338330472454,15.1085323634153,0,0,0,0,0,0,0,0,0,0,0.436050312760893,0.878744730937887,0,0.419959264876088,0,0,0,0,0,0,0,48.5559506063035,59.2469896784677,44.3681982454325,1.0165335962074,0.889294796111139,0,0,0,1.79760066311043,1.15265491596466,51.3263580926964,42.5268705744826,46.6921414200068,113.974742777118,99.3908434282261,24.7431414414207,22.3319947472491,32.1726575313507,138.74601005923,190.126446408845,183.867020307723,39.8296588945185,47.6650623168554,35.9430225684164,211.062347245044,123.245011596938,146.686317865738,91.334861496837,88.4128137762429,63.7486104722528,0.302904773332736,0.831287161174641,4.63783181922684,0,0,0.539703191637817,0,0,11.0951091904084,0,0,0,11.8308472612412,0,0,0,3.89683873820185,2.02687892380079,2.52762222507392,13.0169622879728,0,25.8289321972795,4.16364784238726,5.1759131313064,5.99600292865752,7.83757730873637,8.93674174231356,16.2109902815281,0.494389935468748,0.722996784599558,0,0.485300549842228,0,0,13.0474232852686,471.962644782614,472.092877157528,17.1156226989756,0,0,0,251.198902281888,146.857693504779,48.3769255634528,302.801965774946,334.987249102733,217.761870698419,211.724848303424,5.29564692021645,14.8044295026011,64.6970261590207,50.2956035568673,3.6433724029557,7.35686734187113,8.28285797104606,9.0422890701429,21.159351236063,18.7046031615881,24.3624483855295,122.884101101032,1.07783996466421,2.26927296201383,3.69497360744293,2.6303487891309,3.89266148915837,3.48252166522167,1.64625709126355,6.96619933864726,0,0,0,0.414251545071004,0.938104239924385,0.180062061461015,1.18372367792605,0.393528463494808,0.771335564436891,0.465067889500816,0.268273401399619,0.350296027101508,1.15191894939436,0.820837320395476,0.324275238183423,0.438599962275997,0.219550115291051,0.268412837520744,288.307519481418,96.4216217993895,34.0331346473312,14.2803305998314,2.77274725695804,6.0381534683714,9.79392706047909,12.5043785266472,12.008414367623,10.8428606884159,9.96511029243474,11.0348299665087,14.3261069016154,13.3300836267571,13.062593836981,17.0775687644302,12.752144942607,18.3209971394018,6.82804443431094,10.3966146474853,10.1436962105772,10.5898690479563,12.9948166402309,22.0927832654503,24.1563571814663,18.4512684974503,17.1128613347099,20.4839292110189,0,0.166845105716094,0.196558995113203,0.224862112384854,0.202860121388503,0,0.763877555344259,0,0.162135226775035,0.274561413188081,0,0.372140947668503,0.312037673114561,0.757736633841335,0,0,4.0645701836653,2.27389694124582,4.56301934037672,6.45031325945715,2.81628297946203,3.51763140627813,1.19021820443007,0.780534591431195,1.89162172927429,5.09368786192182,4.30527875375215,7.20998584749247,3.7990696010497,5.06271705035291,0,0,0.491764273019036,0.275936746304732,270.688294719417,245.910118470442,0,0.757412781613119,3.78609863299508,5.85658116444958,7.53981892064796,2.86762557543062,1.55959071857676,2.54768877709949,4.45291771842384,7.89090816360542,8.69633111482352,270.552548427162,8.51640511249612,3.91744328067962,5.21238269931443,14.6823409445557,0,6.5550771761845,5.13950046840077,4.71512699389745,2.95301892880773,5.53383266299069,6.46070732920553,6.90714086007261,6.41695281092498,5.37262488490887,3.16255825724996,3.09406629744561,87.4929786787235,8.46287141947158,8.27895576209629,13.2888961719587,20.2167866352192,21.0475204770443,24.517804069716,18.267896946876,1.40803024838226,0,23.8170669899359,10.7176064411962,5.00539722757307,3.37752379597673,2.98430860007841,3.61109979439135,13.4081184849731,271.462642143386,0.170870880797853,0.619160603889667,0,0.188368457004691,0,0.228778173206523,0,0,0,21.0027535963325,2.05618395827738,7.31950081656655,7.34436317588249,12.3362094648537,8.51613998610093,12.6772485601731,17.8531464366726,17.799404054914,20.2199358335197,1.86401793926078,19.1655599152625,11.6622905914303,11.0857188606255,14.1949367491155,11.2369046425626,12.8406655372991,20.8895884789442,41.9258119197519,56.0997492677553,28.5069262574687,19.0099804130191,0,2.8381530140623,4.00572732942826,1.29920822977795,2.14832034800978,0.79472541912506,0.480781798079875,0.295379054349154,0.302899349844443,0.381034033274999,0.403304740547362,0.194915761479505,0.384847366561318,0,6.57518112484113,1.10992976687032,0,0.503653849092235,168.074946808006,8.25802891985201,21.2455884150028,7.28852488868824,31.0974704501925,306.09549869845,296.449452310622,273.844055424032,264.482047626935,280.883833105963,288.560468802866,271.359045093186,276.046897576447,286.839144887002,253.18479244664,2.49089634202024,9.97562183502578,7.17081144167364,11.4260157022098,10.4806581313991,11.5821410323509,17.1129980407244,13.8043488350059,17.9714757371417,15.1618327058278,18.7574681918777,18.485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| ||
|short_description=p1@Sh3gl2 | |short_description=p1@Sh3gl2 | ||
}} | }} |
Latest revision as of 06:13, 27 September 2015
Short description: | p1@Sh3gl2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Sh3gl2_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000030212, ENSMUST00000107189, NM_019535, uc008tlo.1_5end |
EntrezGene: | Sh3gl2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.89e-12 | 23 |
neuroblast (sensu Vertebrata) | 2.89e-12 | 23 |
neuron | 8.99e-09 | 33 |
neuronal stem cell | 8.99e-09 | 33 |
neuroblast | 8.99e-09 | 33 |
electrically signaling cell | 8.99e-09 | 33 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 2.55e-22 | 54 |
neurectoderm | 1.83e-21 | 64 |
neural plate | 1.83e-21 | 64 |
presumptive neural plate | 1.83e-21 | 64 |
neural tube | 3.90e-21 | 52 |
neural rod | 3.90e-21 | 52 |
future spinal cord | 3.90e-21 | 52 |
neural keel | 3.90e-21 | 52 |
central nervous system | 2.54e-19 | 73 |
brain | 2.71e-18 | 47 |
future brain | 2.71e-18 | 47 |
ecto-epithelium | 2.73e-18 | 73 |
pre-chordal neural plate | 5.99e-18 | 49 |
nervous system | 8.33e-18 | 75 |
regional part of brain | 1.22e-17 | 46 |
anterior neural tube | 6.27e-17 | 40 |
gray matter | 1.75e-16 | 34 |
regional part of forebrain | 2.70e-16 | 39 |
forebrain | 2.70e-16 | 39 |
future forebrain | 2.70e-16 | 39 |
ectoderm-derived structure | 3.82e-16 | 95 |
ectoderm | 3.82e-16 | 95 |
presumptive ectoderm | 3.82e-16 | 95 |
brain grey matter | 8.57e-14 | 29 |
regional part of telencephalon | 8.57e-14 | 29 |
telencephalon | 8.57e-14 | 29 |
structure with developmental contribution from neural crest | 3.28e-10 | 92 |
cerebral cortex | 8.86e-10 | 21 |
cerebral hemisphere | 8.86e-10 | 21 |
pallium | 8.86e-10 | 21 |
occipital lobe | 4.57e-08 | 10 |
visual cortex | 4.57e-08 | 10 |
neocortex | 4.57e-08 | 10 |
regional part of cerebral cortex | 8.57e-08 | 17 |