FFCP PHASE1:Mm9::chr4:148800482..148800502,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=63958 | |EntrezGene=63958 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=3466 | |||
|TSSclassifier=NA | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-157bp_to_ENSMUST00000173005_5end | |association_with_transcript=-157bp_to_ENSMUST00000173005_5end | ||
|cluster_id=chr4:148800482..148800502,- | |||
|description=CAGE_peak_3_at_Ube4b_5end | |description=CAGE_peak_3_at_Ube4b_5end | ||
|id=chr4:148800482..148800502,- | |id=chr4:148800482..148800502,- | ||
|ontology_enrichment_celltype=CL:0000221!3.64e-09!44;CL:0000133!3.64e-09!44;CL:0002319!4.37e-09!43;CL:0000540!1.15e-08!33;CL:0000047!1.15e-08!33;CL:0000031!1.15e-08!33;CL:0000404!1.15e-08!33;CL:0000055!1.45e-07!50;CL:0000393!6.04e-07!39;CL:0000211!6.04e-07!39 | |ontology_enrichment_celltype=CL:0000221!3.64e-09!44;CL:0000133!3.64e-09!44;CL:0002319!4.37e-09!43;CL:0000540!1.15e-08!33;CL:0000047!1.15e-08!33;CL:0000031!1.15e-08!33;CL:0000404!1.15e-08!33;CL:0000055!1.45e-07!50;CL:0000393!6.04e-07!39;CL:0000211!6.04e-07!39 | ||
|ontology_enrichment_celltype_v019_2=CL:0000221,2.62e-09,44;CL:0000133,2.62e-09,44;CL:0002319,3.20e-09,43;CL:0000540,4.34e-09,33;CL:0000047,4.34e-09,33;CL:0000031,4.34e-09,33;CL:0000404,4.34e-09,33;CL:0000393,5.21e-07,39;CL:0000211,5.21e-07,39 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!1.13e-11!102;UBERON:0000924!1.13e-11!102;UBERON:0006601!1.13e-11!102;UBERON:0001017!3.56e-11!73;UBERON:0005743!3.56e-11!73;UBERON:0002346!4.09e-11!71;UBERON:0003075!4.09e-11!71;UBERON:0007284!4.09e-11!71;UBERON:0000073!1.58e-10!75;UBERON:0001016!1.58e-10!75;UBERON:0003056!2.39e-07!49;UBERON:0000033!7.41e-07!63 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,5.79e-11,73;UBERON:0004121,2.65e-10,95;UBERON:0000924,2.65e-10,95;UBERON:0006601,2.65e-10,95;UBERON:0002346,3.35e-10,64;UBERON:0003075,3.35e-10,64;UBERON:0007284,3.35e-10,64;UBERON:0001016,4.95e-10,75;UBERON:0010371,5.58e-09,73;UBERON:0010314,3.20e-07,92;UBERON:0003056,5.65e-07,49 | |||
|phase1_expression=3.04282809499109,2.79180326111489,1.36499771816861,3.32710632437513,1.50268718983904,0.33575854382378,0.700837921786577,0.129123323441576,0.985521055061667,1.63845168425395,0.171217968225505,0.0797721589953364,0.171200729931206,0,0.333109761815663,0,0,0,0,0,0.510259740906419,0.595745707205312,0.522399578277871,0.639969691173627,0.22940928106717,1.72269589234506,1.29228598847722,1.50829862880122,0,0.504060259519861,0.886922042621219,0,0.61506478758457,0,0,0,0.204169356262369,0,0,0,0,0,0,1.38486499773135,1.31790010585369,2.0190142737785,2.34717403304412,5.01457859675027,3.07560655828261,2.91644848611425,2.2397827460058,1.43752564364972,0,0.725362142011344,2.01656279485478,0.514518872071894,0.573066879877513,0.515672092277442,2.83243045203437,4.7609188134483,1.90149421051854,3.04960078862219,4.4464739805557,0,0,0.7104801149461,1.79760066311043,2.68952813725088,3.31806759387129,1.62007125998029,1.89292465216244,4.57041575046086,2.20868540951614,2.69479758272899,3.25874601462004,1.83843757322004,2.20231761998777,1.65993539510744,1.99688493233117,4.74790635828698,3.20206752608434,4.68822033501084,0.558365998002762,2.25105044012672,1.22238598221448,4.12480019663135,2.98980529678116,3.72798891650601,0.757261933331841,0.529000920747499,0.289864488701678,1.72084775396277,10.1995700056163,0.539703191637817,0.649776417447669,2.68816132258401,0.842666520790511,0.340860645156116,0.519572009205738,1.41335829804136,2.11265129665021,1.28326477414318,2.54805239706646,0,0.649473123033642,0.253359865475099,0.505524445014783,1.37020655662872,0.517875767294343,0.742210695324124,3.64319186208885,3.34912026143355,2.7673859670727,1.50722640552623,3.52766121407114,0.628332956648377,1.23597483867187,2.02439099687876,0,1.13236794963186,0.220841518460394,0,0,0.585561594023094,2.51336048176146,1.27728527604296,0.11981512450592,0,0.254140454146129,0.898743836428936,0.915001205637253,2.76439574648302,2.08589184230732,0.767146371990992,1.87009240103604,1.29793010454206,3.36069900706044,0.248813941220186,0,0.420883711772948,5.85541993332167,7.35686734187113,6.12211241338187,6.0281927134286,5.91917542616552,3.97152532883034,5.24729657534481,0.776110112217047,5.82033580918674,5.10586416453112,4.92663147659057,5.91828477554452,1.66828349535359,2.43776516565517,1.85203922767149,3.58261680273288,0.702213187313235,0,0,5.59239585845855,3.98694301967864,1.62055855314913,1.89395788468168,1.77087808572663,1.85120535464854,0.930135779001631,0.804820204198858,2.10177616260905,0.658239399653922,0.820837320395476,0.324275238183423,0,0,0.805238512562231,2.10289948564127,3.08713837137853,1.32167513193519,1.05780226665418,5.75878276445132,5.10920678092965,2.57734922644187,2.62188582010345,1.77902435075896,1.52180500890047,0.474529061544512,1.97638745668813,1.00534083520108,0.596869416123452,0.38992817423824,0,0.648414149624083,0.597423819763102,3.79335801906163,2.62771579002376,2.25415471346161,1.83286195060783,2.13347735884388,2.94570443539338,1.70738650235495,0.442830443938806,0.31399745568275,0.493588655687202,0.296452627087149,2.00214126859313,0.786235980452812,0,0.608580364165509,0.482354319504834,0,0.287696137450811,2.43202840162553,1.37280706594041,0,1.86070473834252,1.5601883655728,0,0.179397413521912,0.482443521363367,0,4.16881105895066,3.91115943460862,2.37643120085263,1.17345124144251,0.670025029767263,0.714130922658041,0.975668239288994,0.472905432318573,0.44292937929755,0.478364305972461,0.327726629431476,0.172684981865896,0,0,0.54390568381871,0.491764273019036,2.20749397043786,1.12385412991454,1.99259867206745,3.77050374366353,0.757412781613119,7.2566890465739,5.0757036758563,4.09304455692318,2.86762557543062,3.7875774594007,3.67999490025482,4.04810701674894,3.79932615284705,4.74345333535828,0.642642632843614,1.27746076687442,4.27357448801413,5.21238269931443,0.494910368917606,1.32745138339963,2.91336763385978,3.62788268357701,2.26326095707078,2.95301892880773,0.307435147943927,2.84271122485043,1.09060118843252,1.42598951353889,0.632073515871632,0,0,2.7235168460303,4.86164953884538,5.17434735131018,5.14408884075822,4.61084607469911,3.74574516964348,3.45552943264454,7.30715877875038,0.469343416127421,0.63549621259146,0,0.49465875882444,1.61464426695906,1.14594557363496,1.07435109602823,0.984845398470368,0.291480836629851,1.66882771809459,0.170870880797853,4.12773735926445,1.29636169158798,0.188368457004691,0.136694227721025,0,0.509935289981566,0.419854356970974,0.276399947608848,0,7.75023184273782,4.67634774391752,3.13215488383224,3.3454127362315,0.87345025498471,1.07891477107857,1.23980183588004,0.26175594198403,0,0,1.12738587736838,2.24274819065968,1.82004339502807,6.22243802700952,4.90807329215378,2.87225413334323,3.0512882047896,1.95306577265925,2.20204623293993,1.44950472495604,0.864090018773596,0.948033361884535,3.44632865993279,1.64337531463724,0.389762468933385,1.43221356533985,0.993406773906324,0.480781798079875,0.738447635872886,1.11063094942962,0.609654453239999,0.504130925684203,0.877120926657772,0.673482891482306,1.28564592399726,0.226730383615211,3.32978930061097,2.06341870201794,1.67884616364078,0.579568782096571,0.375364950902364,1.09890974560359,0.857473516316263,0.501572104035363,2.82375921308533,2.30162618253588,2.29158205375759,2.40594455281163,2.05524755931193,0,0.675022500231806,1.35096360967266,0.453142408984205,0.51776031175182,7.16132698330819,9.97562183502578,4.09760653809922,3.16038732188782,3.5634237646757,3.67687016900028,1.33348036680969,4.12070114477788,2.56735367673452,2.77966932940177,1.52087579934144,2.26351609663291,1.77918864192777,2.30490548657529,2.23998328926892,1.90517476513229,2.31768651889711,3.08654752741928,2.47251540481984,1.47198920134397,2.40008476669791,2.12970967391205,1.43061713968393,2.18019624948493,1.97629698872194,1.4384483341585,2.37806364734604,0.789209134313529,1.49384525230448,2.24456908663095,2.01679530811096,2.06859412988683,4.09231043169689,2.01417893541756,2.3148793317737,3.2475375131933,1.87145286756327,1.93383948643468,3.06061331310149,0.882365676478062,0.231867835620421 | |phase1_expression=3.04282809499109,2.79180326111489,1.36499771816861,3.32710632437513,1.50268718983904,0.33575854382378,0.700837921786577,0.129123323441576,0.985521055061667,1.63845168425395,0.171217968225505,0.0797721589953364,0.171200729931206,0,0.333109761815663,0,0,0,0,0,0.510259740906419,0.595745707205312,0.522399578277871,0.639969691173627,0.22940928106717,1.72269589234506,1.29228598847722,1.50829862880122,0,0.504060259519861,0.886922042621219,0,0.61506478758457,0,0,0,0.204169356262369,0,0,0,0,0,0,1.38486499773135,1.31790010585369,2.0190142737785,2.34717403304412,5.01457859675027,3.07560655828261,2.91644848611425,2.2397827460058,1.43752564364972,0,0.725362142011344,2.01656279485478,0.514518872071894,0.573066879877513,0.515672092277442,2.83243045203437,4.7609188134483,1.90149421051854,3.04960078862219,4.4464739805557,0,0,0.7104801149461,1.79760066311043,2.68952813725088,3.31806759387129,1.62007125998029,1.89292465216244,4.57041575046086,2.20868540951614,2.69479758272899,3.25874601462004,1.83843757322004,2.20231761998777,1.65993539510744,1.99688493233117,4.74790635828698,3.20206752608434,4.68822033501084,0.558365998002762,2.25105044012672,1.22238598221448,4.12480019663135,2.98980529678116,3.72798891650601,0.757261933331841,0.529000920747499,0.289864488701678,1.72084775396277,10.1995700056163,0.539703191637817,0.649776417447669,2.68816132258401,0.842666520790511,0.340860645156116,0.519572009205738,1.41335829804136,2.11265129665021,1.28326477414318,2.54805239706646,0,0.649473123033642,0.253359865475099,0.505524445014783,1.37020655662872,0.517875767294343,0.742210695324124,3.64319186208885,3.34912026143355,2.7673859670727,1.50722640552623,3.52766121407114,0.628332956648377,1.23597483867187,2.02439099687876,0,1.13236794963186,0.220841518460394,0,0,0.585561594023094,2.51336048176146,1.27728527604296,0.11981512450592,0,0.254140454146129,0.898743836428936,0.915001205637253,2.76439574648302,2.08589184230732,0.767146371990992,1.87009240103604,1.29793010454206,3.36069900706044,0.248813941220186,0,0.420883711772948,5.85541993332167,7.35686734187113,6.12211241338187,6.0281927134286,5.91917542616552,3.97152532883034,5.24729657534481,0.776110112217047,5.82033580918674,5.10586416453112,4.92663147659057,5.91828477554452,1.66828349535359,2.43776516565517,1.85203922767149,3.58261680273288,0.702213187313235,0,0,5.59239585845855,3.98694301967864,1.62055855314913,1.89395788468168,1.77087808572663,1.85120535464854,0.930135779001631,0.804820204198858,2.10177616260905,0.658239399653922,0.820837320395476,0.324275238183423,0,0,0.805238512562231,2.10289948564127,3.08713837137853,1.32167513193519,1.05780226665418,5.75878276445132,5.10920678092965,2.57734922644187,2.62188582010345,1.77902435075896,1.52180500890047,0.474529061544512,1.97638745668813,1.00534083520108,0.596869416123452,0.38992817423824,0,0.648414149624083,0.597423819763102,3.79335801906163,2.62771579002376,2.25415471346161,1.83286195060783,2.13347735884388,2.94570443539338,1.70738650235495,0.442830443938806,0.31399745568275,0.493588655687202,0.296452627087149,2.00214126859313,0.786235980452812,0,0.608580364165509,0.482354319504834,0,0.287696137450811,2.43202840162553,1.37280706594041,0,1.86070473834252,1.5601883655728,0,0.179397413521912,0.482443521363367,0,4.16881105895066,3.91115943460862,2.37643120085263,1.17345124144251,0.670025029767263,0.714130922658041,0.975668239288994,0.472905432318573,0.44292937929755,0.478364305972461,0.327726629431476,0.172684981865896,0,0,0.54390568381871,0.491764273019036,2.20749397043786,1.12385412991454,1.99259867206745,3.77050374366353,0.757412781613119,7.2566890465739,5.0757036758563,4.09304455692318,2.86762557543062,3.7875774594007,3.67999490025482,4.04810701674894,3.79932615284705,4.74345333535828,0.642642632843614,1.27746076687442,4.27357448801413,5.21238269931443,0.494910368917606,1.32745138339963,2.91336763385978,3.62788268357701,2.26326095707078,2.95301892880773,0.307435147943927,2.84271122485043,1.09060118843252,1.42598951353889,0.632073515871632,0,0,2.7235168460303,4.86164953884538,5.17434735131018,5.14408884075822,4.61084607469911,3.74574516964348,3.45552943264454,7.30715877875038,0.469343416127421,0.63549621259146,0,0.49465875882444,1.61464426695906,1.14594557363496,1.07435109602823,0.984845398470368,0.291480836629851,1.66882771809459,0.170870880797853,4.12773735926445,1.29636169158798,0.188368457004691,0.136694227721025,0,0.509935289981566,0.419854356970974,0.276399947608848,0,7.75023184273782,4.67634774391752,3.13215488383224,3.3454127362315,0.87345025498471,1.07891477107857,1.23980183588004,0.26175594198403,0,0,1.12738587736838,2.24274819065968,1.82004339502807,6.22243802700952,4.90807329215378,2.87225413334323,3.0512882047896,1.95306577265925,2.20204623293993,1.44950472495604,0.864090018773596,0.948033361884535,3.44632865993279,1.64337531463724,0.389762468933385,1.43221356533985,0.993406773906324,0.480781798079875,0.738447635872886,1.11063094942962,0.609654453239999,0.504130925684203,0.877120926657772,0.673482891482306,1.28564592399726,0.226730383615211,3.32978930061097,2.06341870201794,1.67884616364078,0.579568782096571,0.375364950902364,1.09890974560359,0.857473516316263,0.501572104035363,2.82375921308533,2.30162618253588,2.29158205375759,2.40594455281163,2.05524755931193,0,0.675022500231806,1.35096360967266,0.453142408984205,0.51776031175182,7.16132698330819,9.97562183502578,4.09760653809922,3.16038732188782,3.5634237646757,3.67687016900028,1.33348036680969,4.12070114477788,2.56735367673452,2.77966932940177,1.52087579934144,2.26351609663291,1.77918864192777,2.30490548657529,2.23998328926892,1.90517476513229,2.31768651889711,3.08654752741928,2.47251540481984,1.47198920134397,2.40008476669791,2.12970967391205,1.43061713968393,2.18019624948493,1.97629698872194,1.4384483341585,2.37806364734604,0.789209134313529,1.49384525230448,2.24456908663095,2.01679530811096,2.06859412988683,4.09231043169689,2.01417893541756,2.3148793317737,3.2475375131933,1.87145286756327,1.93383948643468,3.06061331310149,0.882365676478062,0.231867835620421 | ||
|short_description=p3@Ube4b | |short_description=p3@Ube4b | ||
}} | }} |
Latest revision as of 17:37, 26 September 2015
Short description: | p3@Ube4b |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Ube4b_5end |
Coexpression cluster: | MCL_coexpression_mm9:3466 |
Association with transcript: | -157bp_to_ENSMUST00000173005_5end |
EntrezGene: | Ube4b |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 2.62e-09 | 44 |
neurectodermal cell | 2.62e-09 | 44 |
neural cell | 3.20e-09 | 43 |
neuron | 4.34e-09 | 33 |
neuronal stem cell | 4.34e-09 | 33 |
neuroblast | 4.34e-09 | 33 |
electrically signaling cell | 4.34e-09 | 33 |
electrically responsive cell | 5.21e-07 | 39 |
electrically active cell | 5.21e-07 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 5.79e-11 | 73 |
ectoderm-derived structure | 2.65e-10 | 95 |
ectoderm | 2.65e-10 | 95 |
presumptive ectoderm | 2.65e-10 | 95 |
neurectoderm | 3.35e-10 | 64 |
neural plate | 3.35e-10 | 64 |
presumptive neural plate | 3.35e-10 | 64 |
nervous system | 4.95e-10 | 75 |
ecto-epithelium | 5.58e-09 | 73 |
structure with developmental contribution from neural crest | 3.20e-07 | 92 |
pre-chordal neural plate | 5.65e-07 | 49 |