FFCP PHASE1:Mm9::chr14:37781955..37781979,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=72972 | |EntrezGene=72972 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=2906 | |||
|TSSclassifier=NA | |||
|UniProt=Q3UHI0 | |UniProt=Q3UHI0 | ||
|association_with_transcript=-5bp_to_ENSMUST00000090024,ENSMUST00000111893,NM_027045,uc007tbo.1_5end | |association_with_transcript=-5bp_to_ENSMUST00000090024,ENSMUST00000111893,NM_027045,uc007tbo.1_5end | ||
|cluster_id=chr14:37781955..37781979,- | |||
|description=CAGE_peak_3_at_Gcap14_5end | |description=CAGE_peak_3_at_Gcap14_5end | ||
|id=chr14:37781955..37781979,- | |id=chr14:37781955..37781979,- | ||
|ontology_enrichment_celltype=CL:0000117!4.73e-13!23;CL:0000337!4.73e-13!23;CL:0000540!2.40e-08!33;CL:0000047!2.40e-08!33;CL:0000031!2.40e-08!33;CL:0000404!2.40e-08!33 | |ontology_enrichment_celltype=CL:0000117!4.73e-13!23;CL:0000337!4.73e-13!23;CL:0000540!2.40e-08!33;CL:0000047!2.40e-08!33;CL:0000031!2.40e-08!33;CL:0000404!2.40e-08!33 | ||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.82e-13,23;CL:0000337,2.82e-13,23;CL:0000540,3.46e-08,33;CL:0000047,3.46e-08,33;CL:0000031,3.46e-08,33;CL:0000404,3.46e-08,33 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002020!1.84e-16!34;UBERON:0001049!6.51e-15!52;UBERON:0005068!6.51e-15!52;UBERON:0006241!6.51e-15!52;UBERON:0007135!6.51e-15!52;UBERON:0000955!4.22e-14!50;UBERON:0006238!4.22e-14!50;UBERON:0002791!1.02e-13!29;UBERON:0003528!1.02e-13!29;UBERON:0001893!1.02e-13!29;UBERON:0002616!1.55e-13!49;UBERON:0007811!1.96e-13!86;UBERON:0000033!3.04e-13!63;UBERON:0000153!1.15e-12!94;UBERON:0000073!1.36e-12!75;UBERON:0001016!1.36e-12!75;UBERON:0001017!1.96e-12!73;UBERON:0005743!1.96e-12!73;UBERON:0003080!1.88e-11!40;UBERON:0002780!5.90e-11!39;UBERON:0001890!5.90e-11!39;UBERON:0006240!5.90e-11!39;UBERON:0004121!7.20e-11!102;UBERON:0000924!7.20e-11!102;UBERON:0006601!7.20e-11!102;UBERON:0002346!7.25e-11!71;UBERON:0003075!7.25e-11!71;UBERON:0007284!7.25e-11!71;UBERON:0003056!2.98e-10!49;UBERON:0000956!1.80e-09!21;UBERON:0001869!1.80e-09!21;UBERON:0000203!1.80e-09!21;UBERON:0002619!1.85e-07!17 | |ontology_enrichment_uberon=UBERON:0002020!1.84e-16!34;UBERON:0001049!6.51e-15!52;UBERON:0005068!6.51e-15!52;UBERON:0006241!6.51e-15!52;UBERON:0007135!6.51e-15!52;UBERON:0000955!4.22e-14!50;UBERON:0006238!4.22e-14!50;UBERON:0002791!1.02e-13!29;UBERON:0003528!1.02e-13!29;UBERON:0001893!1.02e-13!29;UBERON:0002616!1.55e-13!49;UBERON:0007811!1.96e-13!86;UBERON:0000033!3.04e-13!63;UBERON:0000153!1.15e-12!94;UBERON:0000073!1.36e-12!75;UBERON:0001016!1.36e-12!75;UBERON:0001017!1.96e-12!73;UBERON:0005743!1.96e-12!73;UBERON:0003080!1.88e-11!40;UBERON:0002780!5.90e-11!39;UBERON:0001890!5.90e-11!39;UBERON:0006240!5.90e-11!39;UBERON:0004121!7.20e-11!102;UBERON:0000924!7.20e-11!102;UBERON:0006601!7.20e-11!102;UBERON:0002346!7.25e-11!71;UBERON:0003075!7.25e-11!71;UBERON:0007284!7.25e-11!71;UBERON:0003056!2.98e-10!49;UBERON:0000956!1.80e-09!21;UBERON:0001869!1.80e-09!21;UBERON:0000203!1.80e-09!21;UBERON:0002619!1.85e-07!17 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002020,7.87e-17,34;UBERON:0000073,8.17e-17,54;UBERON:0001049,1.66e-15,52;UBERON:0005068,1.66e-15,52;UBERON:0006241,1.66e-15,52;UBERON:0007135,1.66e-15,52;UBERON:0003528,5.00e-14,29;UBERON:0002791,5.00e-14,29;UBERON:0001893,5.00e-14,29;UBERON:0001016,4.52e-13,75;UBERON:0001017,6.58e-13,73;UBERON:0000955,8.48e-13,47;UBERON:0006238,8.48e-13,47;UBERON:0002616,3.07e-12,46;UBERON:0002346,3.11e-12,64;UBERON:0003075,3.11e-12,64;UBERON:0007284,3.11e-12,64;UBERON:0010371,4.49e-12,73;UBERON:0004121,6.72e-12,95;UBERON:0000924,6.72e-12,95;UBERON:0006601,6.72e-12,95;UBERON:0003080,9.01e-12,40;UBERON:0002780,2.91e-11,39;UBERON:0001890,2.91e-11,39;UBERON:0006240,2.91e-11,39;UBERON:0003056,2.07e-10,49;UBERON:0010314,8.46e-10,92;UBERON:0000956,1.07e-09,21;UBERON:0001869,1.07e-09,21;UBERON:0000203,1.07e-09,21;UBERON:0002619,1.22e-07,17;UBERON:0002021,8.58e-07,10;UBERON:0000411,8.58e-07,10;UBERON:0001950,8.58e-07,10 | |||
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|phase1_expression=2.08193501236232,2.09385244583617,5.45999087267443,0.90739263392049,3.00537437967808,1.6787927191189,0.700837921786577,2.45334314538995,0.422366166455,1.63845168425395,1.19852577757853,0.319088635981346,4.79362043807376,2.44777126773193,0.999329285446988,0,0.699561878128147,2.05050407482854,2.74228867211478,3.39511721438424,6.12311689087702,0.794327609607082,1.30599894569468,0.799962113967033,0.68822784320151,2.8711598205751,1.7230479846363,1.50829862880122,1.14014051673824,1.00812051903972,0,0,0,0,1.1554064790051,0.831173226792462,0.408338712524738,1.67412652294763,0,1.57057123192139,2.94115744015507,0,0.485510353031154,0.881277725829041,0.912392380975631,0.734187008646726,0,1.09012578190223,0.439372365468944,1.55543919259427,0.699932108126813,0,2.85230430298152,3.62681071005672,4.7053131879945,0,2.0057340795713,1.03134418455488,5.26022798234954,4.23192783417626,6.97214543856797,0.338844532069132,0,0.449949858640699,0,0.7104801149461,0.299600110518405,0.384218305321555,6.947204024668,5.8052553482627,4.6271491497304,4.85606673486466,4.41737081903227,5.75706756310284,5.36734637702124,3.67687514644008,13.2139057199266,8.55505165170758,9.36999852863085,4.48413378282659,6.31264740856627,3.64639359389732,8.93385596804419,5.6276261003168,8.86229837105499,8.83885756421003,7.97281412474976,7.26957838718672,2.04460721999597,1.96486056277642,1.44932244350839,2.58127163094416,0,0.539703191637817,1.94932925234301,0,1.54488862144927,0.511290967734173,1.03914401841148,1.06001872353102,2.67602497575693,3.84979432242953,10.1922095882658,14.2213340630666,0.216491041011214,0.760079596425296,1.51657333504435,1.37020655662872,4.66088190564909,1.63286352971307,1.38788261412909,1.21786191324856,1.15307748628029,1.3565037649736,1.76383060703557,1.75933227861546,0.988779870937496,1.87979163995885,0.884610551949874,1.94120219936891,1.32504911076236,1.93950101254089,0,3.51336956413857,5.65506108396329,1.27728527604296,2.03685711660064,1.79970819298022,1.01656181658452,6.29120685500255,5.94750783664214,13.6963243803022,8.16974304903699,5.8814555185976,6.64921742590592,6.97637431191358,1.73126918545538,1.11966273549084,2.0217820674694,1.26265113531884,0.910843100738926,0.459804208866946,2.34080768746954,1.65775299619287,2.78949646520444,2.94661556655154,3.46696380870997,1.29351685369508,0.646703978798527,1.89106080167819,2.63926686245923,0.657587197282725,2.22437799380478,1.0447564995665,1.4404749548556,1.59227413454795,0.702213187313235,0.51469581422943,1.13665399758237,0.621377317606506,1.87620847984877,1.62055855314913,0.710234206755631,1.77087808572663,1.07986979021165,2.79040733700489,1.60964040839772,2.56883753207773,1.31647879930784,1.47750717671186,2.51313309592153,2.77779976108131,1.75640092232841,1.47627060636409,7.57043814830858,8.64398743985989,1.32167513193519,1.05780226665418,1.06644125267617,1.62565670302307,0.902072229254653,0.80673409849337,0.22237804384487,1.14135375667535,2.37264530772256,0.658795818896044,1.75934646160189,1.1937388322469,1.36474860983384,1.79763881730844,0.864552199498777,1.59313018603494,1.13800740571849,1.37098215131675,1.1270773567308,1.22190796707189,1.93952487167626,1.19230893813542,1.89709611372772,2.06654207171443,1.56998727841375,1.60416313098341,0.592905254174298,0.500535317148282,0.786235980452812,0.224862112384854,0.202860121388503,0.964708639009667,0.25462585178142,0,0.162135226775035,1.37280706594041,1.43768206527355,1.48856379067401,0.936113019343682,0.757736633841335,1.25578189465339,0.964887042726734,1.29327233116623,1.70542270593436,0.977789858652155,0.678980343100753,1.40814148973101,1.67506257441816,0.952174563544055,0.975668239288994,1.89162172927429,0.8858587585951,2.55127629851979,1.96635977658886,2.76295970985433,2.16973587872267,0,1.08781136763742,0.491764273019036,1.65562047782839,6.58257418949947,5.27452589664914,0.655739781506702,2.01976741763498,0.94652465824877,0.780877488593277,1.07711698866399,1.91175038362042,1.33679204449436,3.11384183867716,0.404810701674894,1.75353514746787,0.790575555893047,7.39039027770156,2.41298144854057,0.35613120733451,0.81443479676788,2.47455184458803,1.32745138339963,0.485561272309963,1.81394134178851,0.377210159511796,0.295301892880773,0.307435147943927,0.516856586336442,1.45413491791002,1.78248689192361,0.632073515871632,1.05418608574999,2.06271086496374,1.02131881726136,1.26042765821917,0.388076051348264,1.92903331528433,2.30542303734956,1.42695054081656,1.64549020602121,0.608929898229199,1.40803024838226,2.1183207086382,0.441056796109924,2.30840754118072,4.19807509409354,1.80938774784468,1.90995750405018,1.14898629821543,1.45740418314925,9.08583979851498,1.19609616558497,0.82554747185289,1.85194527369712,0.188368457004691,0.820165366326151,0.915112692826091,1.01987057996313,2.51912614182584,1.93479963326193,0,1.89801596148681,1.42323626988794,1.18805874903981,0.836353184057875,1.09181281873089,1.21377911746339,1.07449492442937,0.523511883968059,0.90730481304255,1.24267862617385,13.5286305284206,1.34564891439581,1.820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| ||
|short_description=p3@Gcap14 | |short_description=p3@Gcap14 | ||
}} | }} |
Latest revision as of 22:39, 25 September 2015
Short description: | p3@Gcap14 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Gcap14_5end |
Coexpression cluster: | MCL_coexpression_mm9:2906 |
Association with transcript: | -5bp_to_ENSMUST00000090024, ENSMUST00000111893, NM_027045, uc007tbo.1_5end |
EntrezGene: | Gcap14 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.82e-13 | 23 |
neuroblast (sensu Vertebrata) | 2.82e-13 | 23 |
neuron | 3.46e-08 | 33 |
neuronal stem cell | 3.46e-08 | 33 |
neuroblast | 3.46e-08 | 33 |
electrically signaling cell | 3.46e-08 | 33 |
Ontology term | p-value | n |
---|---|---|
gray matter | 7.87e-17 | 34 |
regional part of nervous system | 8.17e-17 | 54 |
neural tube | 1.66e-15 | 52 |
neural rod | 1.66e-15 | 52 |
future spinal cord | 1.66e-15 | 52 |
neural keel | 1.66e-15 | 52 |
brain grey matter | 5.00e-14 | 29 |
regional part of telencephalon | 5.00e-14 | 29 |
telencephalon | 5.00e-14 | 29 |
nervous system | 4.52e-13 | 75 |
central nervous system | 6.58e-13 | 73 |
brain | 8.48e-13 | 47 |
future brain | 8.48e-13 | 47 |
regional part of brain | 3.07e-12 | 46 |
neurectoderm | 3.11e-12 | 64 |
neural plate | 3.11e-12 | 64 |
presumptive neural plate | 3.11e-12 | 64 |
ecto-epithelium | 4.49e-12 | 73 |
ectoderm-derived structure | 6.72e-12 | 95 |
ectoderm | 6.72e-12 | 95 |
presumptive ectoderm | 6.72e-12 | 95 |
anterior neural tube | 9.01e-12 | 40 |
regional part of forebrain | 2.91e-11 | 39 |
forebrain | 2.91e-11 | 39 |
future forebrain | 2.91e-11 | 39 |
pre-chordal neural plate | 2.07e-10 | 49 |
structure with developmental contribution from neural crest | 8.46e-10 | 92 |
cerebral cortex | 1.07e-09 | 21 |
cerebral hemisphere | 1.07e-09 | 21 |
pallium | 1.07e-09 | 21 |
regional part of cerebral cortex | 1.22e-07 | 17 |
occipital lobe | 8.58e-07 | 10 |
visual cortex | 8.58e-07 | 10 |
neocortex | 8.58e-07 | 10 |