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{{CL
{{CL
|id=CL:0000954
|alt_id=
|name=small pre-B-II cell
|namespace=cell
|def="A small pre-B-II cell is a pre-B-II cell that is Rag1-positive, Rag2-positive, pre-BCR-negative, and BCR-negative, is not proliferating, and carries a DNA rearrangement of one or more immunoglobulin light chain genes." [GO_REF:0000031, GOC:rhs, GOC:tfm, PMID:9785673]
|xref=
|is_a=CL:0000955
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A small pre-B-II cell is a pre-B-II cell that is Rag1-positive, Rag2-positive, pre-BCR-negative, and BCR-negative, is not proliferating, and carries a DNA rearrangement of one or more immunoglobulin light chain genes." [GO_REF:0000031, GOC:rhs, GOC:tfm, PMID:9785673]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
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|id=CL:0000954
|is_a=CL:0000955
|is_obsolete=
|located_in=
|located_in=
|name=small pre-B-II cell
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
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|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|subset=
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}}
}}

Latest revision as of 16:39, 12 September 2014

Name:small pre-B-II cell
Namespace:FANTOM
Definition:"A small pre-B-II cell is a pre-B-II cell that is Rag1-positive, Rag2-positive, pre-BCR-negative, and BCR-negative, is not proliferating, and carries a DNA rearrangement of one or more immunoglobulin light chain genes." [GO_REF:0000031, GOC:rhs, GOC:tfm, PMID:9785673]


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000955(pre-B-II cell)



Children


develops from:CL:0000816 (immature B cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.



Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000954 (small pre-B-II cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.55e-98FFCP PHASE1:Hg19::chr21:20747453..20747465,-#_997c583b23c812a0dc17c1a86a7fd21cp@chr21:20747453..20747465, -
1.55e-98FFCP PHASE2:Hg19::chr3:79363599..79363606,+#_997c583b23c812a0dc17c1a86a7fd21cp@chr3:79363599..79363606, +
1.55e-98FFCP PHASE2:Hg19::chr15:66464730..66464736,-#_997c583b23c812a0dc17c1a86a7fd21cp@chr15:66464730..66464736, -
1.55e-98FFCP PHASE1:Hg19::chrX:42727038..42727047,-#_997c583b23c812a0dc17c1a86a7fd21cp@chrX:42727038..42727047, -
1.55e-98FFCP PHASE2:Hg19::chr6:164466441..164466449,+#_997c583b23c812a0dc17c1a86a7fd21cp@chr6:164466441..164466449, +
1.55e-98FFCP PHASE2:Hg19::chr4:176358284..176358287,-#_997c583b23c812a0dc17c1a86a7fd21cp@chr4:176358284..176358287, -
1.55e-98FFCP PHASE2:Hg19::chr12:40953942..40953946,+#_997c583b23c812a0dc17c1a86a7fd21cp@chr12:40953942..40953946, +
1.55e-98FFCP PHASE2:Hg19::chr5:88646759..88646764,+#_997c583b23c812a0dc17c1a86a7fd21cp@chr5:88646759..88646764, +
1.55e-98FFCP PHASE1:Hg19::chr6:164466345..164466352,+#_997c583b23c812a0dc17c1a86a7fd21cp@chr6:164466345..164466352, +
1.55e-98FFCP PHASE1:Hg19::chr1:101853882..101853891,-#_997c583b23c812a0dc17c1a86a7fd21cp@chr1:101853882..101853891, -
1.55e-98FFCP PHASE1:Hg19::chr4:176353908..176353917,-#_997c583b23c812a0dc17c1a86a7fd21cp@chr4:176353908..176353917, -
1.55e-98FFCP PHASE2:Hg19::chr21:20867728..20867731,-#_997c583b23c812a0dc17c1a86a7fd21cp@chr21:20867728..20867731, -
1.55e-98FFCP PHASE2:Hg19::chr1:17349613..17349631,-#_997c583b23c812a0dc17c1a86a7fd21cp8@SDHB
1.55e-98FFCP PHASE1:Hg19::chr8:128270027..128270033,-#_997c583b23c812a0dc17c1a86a7fd21cp@chr8:128270027..128270033, -
1.55e-98FFCP PHASE2:Hg19::chr2:77746703..77746711,-#_997c583b23c812a0dc17c1a86a7fd21cp9@LRRTM4
1.55e-98FFCP PHASE1:Hg19::chr12:4313331..4313334,+#_997c583b23c812a0dc17c1a86a7fd21cp@chr12:4313331..4313334, +
1.55e-98FFCP PHASE1:Hg19::chr10:56410468..56410499,-#_997c583b23c812a0dc17c1a86a7fd21cp@chr10:56410468..56410499, -
1.55e-98FFCP PHASE1:Hg19::chr6:166581265..166581274,-#_997c583b23c812a0dc17c1a86a7fd21cp5@T
1.55e-98FFCP PHASE2:Hg19::chr3:168337915..168337930,-#_997c583b23c812a0dc17c1a86a7fd21cp@chr3:168337915..168337930, -
1.55e-98FFCP PHASE1:Hg19::chr7:86415255..86415288,+#_997c583b23c812a0dc17c1a86a7fd21cp@chr7:86415255..86415288, +
1.55e-98FFCP PHASE2:Hg19::chr21:20752617..20752622,-#_997c583b23c812a0dc17c1a86a7fd21cp@chr21:20752617..20752622, -
1.55e-98FFCP PHASE1:Hg19::chr3:178947187..178947192,+#_997c583b23c812a0dc17c1a86a7fd21cp@chr3:178947187..178947192, +
1.55e-98FFCP PHASE2:Hg19::chr14:106829914..106829921,-#_997c583b23c812a0dc17c1a86a7fd21cp1@HM996258, p1@HM996415, p1@HM996438
1.55e-98FFCP PHASE1:Hg19::chr21:20752389..20752420,-#_997c583b23c812a0dc17c1a86a7fd21cp@chr21:20752389..20752420, -
1.55e-98FFCP PHASE1:Hg19::chr11:26122006..26122011,-#_997c583b23c812a0dc17c1a86a7fd21cp@chr11:26122006..26122011, -
1.55e-98FFCP PHASE2:Hg19::chr6:166581583..166581586,+#_997c583b23c812a0dc17c1a86a7fd21cp@chr6:166581583..166581586, +
1.55e-98FFCP PHASE2:Hg19::chr6:39962295..39962305,+#_997c583b23c812a0dc17c1a86a7fd21cp@chr6:39962295..39962305, +
1.55e-98FFCP PHASE2:Hg19::chr4:8046897..8046900,+#_997c583b23c812a0dc17c1a86a7fd21cp@chr4:8046897..8046900, +
1.55e-98FFCP PHASE1:Hg19::chr3:79363599..79363606,+#_997c583b23c812a0dc17c1a86a7fd21cp@chr3:79363599..79363606, +
1.55e-98FFCP PHASE1:Hg19::chr6:164466441..164466449,+#_997c583b23c812a0dc17c1a86a7fd21cp@chr6:164466441..164466449, +
1.55e-98FFCP PHASE2:Hg19::chr9:138904824..138904829,+#_997c583b23c812a0dc17c1a86a7fd21cp@chr9:138904824..138904829, +
1.55e-98FFCP PHASE1:Hg19::chr4:176358284..176358287,-#_997c583b23c812a0dc17c1a86a7fd21cp@chr4:176358284..176358287, -
1.55e-98FFCP PHASE1:Hg19::chr15:66464730..66464736,-#_997c583b23c812a0dc17c1a86a7fd21cp@chr15:66464730..66464736, -
1.55e-98FFCP PHASE2:Hg19::chr1:17349654..17349690,-#_997c583b23c812a0dc17c1a86a7fd21cp6@SDHB
1.55e-98FFCP PHASE1:Hg19::chr21:20867728..20867731,-#_997c583b23c812a0dc17c1a86a7fd21cp@chr21:20867728..20867731, -
1.55e-98FFCP PHASE1:Hg19::chr5:88646759..88646764,+#_997c583b23c812a0dc17c1a86a7fd21cp@chr5:88646759..88646764, +
1.55e-98FFCP PHASE1:Hg19::chr1:17349613..17349631,-#_997c583b23c812a0dc17c1a86a7fd21cp8@SDHB
1.55e-98FFCP PHASE2:Hg19::chr14:53594794..53594799,+#_997c583b23c812a0dc17c1a86a7fd21cp@chr14:53594794..53594799, +
1.55e-98FFCP PHASE1:Hg19::chr3:168236611..168236612,-#_997c583b23c812a0dc17c1a86a7fd21cp@chr3:168236611..168236612, -
1.55e-98FFCP PHASE2:Hg19::chr2:77746775..77746779,-#_997c583b23c812a0dc17c1a86a7fd21cp14@LRRTM4
1.55e-98FFCP PHASE2:Hg19::chr17:76471146..76471155,+#_997c583b23c812a0dc17c1a86a7fd21cp@chr17:76471146..76471155, +
1.55e-98FFCP PHASE1:Hg19::chr2:77746703..77746711,-#_997c583b23c812a0dc17c1a86a7fd21cp9@LRRTM4
1.55e-98FFCP PHASE2:Hg19::chr10:56410468..56410499,-#_997c583b23c812a0dc17c1a86a7fd21cp@chr10:56410468..56410499, -
1.55e-98FFCP PHASE2:Hg19::chr22:23234780..23234786,+#_997c583b23c812a0dc17c1a86a7fd21cp@chr22:23234780..23234786, +
1.55e-98FFCP PHASE1:Hg19::chr12:117256221..117256231,+#_997c583b23c812a0dc17c1a86a7fd21cp@chr12:117256221..117256231, +
1.55e-98FFCP PHASE2:Hg19::chr3:158747347..158747353,+#_997c583b23c812a0dc17c1a86a7fd21cp@chr3:158747347..158747353, +
1.55e-98FFCP PHASE2:Hg19::chr3:19436672..19436686,+#_997c583b23c812a0dc17c1a86a7fd21cp@chr3:19436672..19436686, +
1.55e-98FFCP PHASE1:Hg19::chr21:20752617..20752622,-#_997c583b23c812a0dc17c1a86a7fd21cp@chr21:20752617..20752622, -
1.55e-98FFCP PHASE1:Hg19::chr11:26124040..26124064,-#_997c583b23c812a0dc17c1a86a7fd21cp@chr11:26124040..26124064, -
1.55e-98FFCP PHASE2:Hg19::chr6:166581590..166581596,+#_997c583b23c812a0dc17c1a86a7fd21cp@chr6:166581590..166581596, +
1.55e-98FFCP PHASE1:Hg19::chr14:106829914..106829921,-#_997c583b23c812a0dc17c1a86a7fd21cp1@HM996258, p1@HM996415, p1@HM996438
1.55e-98FFCP PHASE2:Hg19::chr6:39962337..39962342,+#_997c583b23c812a0dc17c1a86a7fd21cp@chr6:39962337..39962342, +
1.55e-98FFCP PHASE2:Hg19::chr4:8046990..8046993,-#_997c583b23c812a0dc17c1a86a7fd21cp@chr4:8046990..8046993, -
1.55e-98FFCP PHASE2:Hg19::chr17:76475275..76475285,-#_997c583b23c812a0dc17c1a86a7fd21cp@chr17:76475275..76475285, -
1.55e-98FFCP PHASE2:Hg19::chr3:6686484..6686491,+#_997c583b23c812a0dc17c1a86a7fd21cp@chr3:6686484..6686491, +
1.55e-98FFCP PHASE1:Hg19::chr6:166581583..166581586,+#_997c583b23c812a0dc17c1a86a7fd21cp@chr6:166581583..166581586, +
1.55e-98FFCP PHASE2:Hg19::chr2:77581116..77581120,-#_997c583b23c812a0dc17c1a86a7fd21cp@chr2:77581116..77581120, -
1.55e-98FFCP PHASE1:Hg19::chr12:122458855..122458857,+#_997c583b23c812a0dc17c1a86a7fd21cp16@BCL7A
1.55e-98FFCP PHASE1:Hg19::chr12:40991131..40991149,+#_997c583b23c812a0dc17c1a86a7fd21cp@chr12:40991131..40991149, +
1.55e-98FFCP PHASE1:Hg19::chr4:8046897..8046900,+#_997c583b23c812a0dc17c1a86a7fd21cp@chr4:8046897..8046900, +
1.55e-98FFCP PHASE1:Hg19::chr6:39962295..39962305,+#_997c583b23c812a0dc17c1a86a7fd21cp@chr6:39962295..39962305, +
1.55e-98FFCP PHASE2:Hg19::chr4:3881462..3881469,-#_997c583b23c812a0dc17c1a86a7fd21cp@chr4:3881462..3881469, -
1.55e-98FFCP PHASE2:Hg19::chr12:4313331..4313334,+#_997c583b23c812a0dc17c1a86a7fd21cp@chr12:4313331..4313334, +
1.55e-98FFCP PHASE2:Hg19::chr5:114291872..114291873,+#_997c583b23c812a0dc17c1a86a7fd21cp@chr5:114291872..114291873, +
1.55e-98FFCP PHASE1:Hg19::chr1:17349654..17349690,-#_997c583b23c812a0dc17c1a86a7fd21cp6@SDHB
1.55e-98FFCP PHASE1:Hg19::chr3:168337915..168337930,-#_997c583b23c812a0dc17c1a86a7fd21cp@chr3:168337915..168337930, -
1.55e-98FFCP PHASE1:Hg19::chr12:122462770..122462775,+#_997c583b23c812a0dc17c1a86a7fd21cp@chr12:122462770..122462775, +
1.55e-98FFCP PHASE2:Hg19::chr17:76471163..76471166,+#_997c583b23c812a0dc17c1a86a7fd21cp@chr17:76471163..76471166, +
1.55e-98FFCP PHASE2:Hg19::chr11:26122006..26122011,-#_997c583b23c812a0dc17c1a86a7fd21cp@chr11:26122006..26122011, -
1.55e-98FFCP PHASE1:Hg19::chr2:77746775..77746779,-#_997c583b23c812a0dc17c1a86a7fd21cp14@LRRTM4
1.55e-98FFCP PHASE2:Hg19::chr6:164466325..164466331,+#_997c583b23c812a0dc17c1a86a7fd21cp@chr6:164466325..164466331, +
1.55e-98FFCP PHASE1:Hg19::chr17:76471146..76471155,+#_997c583b23c812a0dc17c1a86a7fd21cp@chr17:76471146..76471155, +
1.55e-98FFCP PHASE2:Hg19::chrX:89012355..89012363,+#_997c583b23c812a0dc17c1a86a7fd21cp@chrX:89012355..89012363, +
1.55e-98FFCP PHASE2:Hg19::chr12:8808206..8808209,-#_997c583b23c812a0dc17c1a86a7fd21cp@chr12:8808206..8808209, -
1.55e-98FFCP PHASE1:Hg19::chr22:23234780..23234786,+#_997c583b23c812a0dc17c1a86a7fd21cp@chr22:23234780..23234786, +
1.55e-98FFCP PHASE1:Hg19::chr3:19436672..19436686,+#_997c583b23c812a0dc17c1a86a7fd21cp@chr3:19436672..19436686, +
1.55e-98FFCP PHASE2:Hg19::chr12:117256221..117256231,+#_997c583b23c812a0dc17c1a86a7fd21cp@chr12:117256221..117256231, +
1.55e-98FFCP PHASE1:Hg19::chr9:138904824..138904829,+#_997c583b23c812a0dc17c1a86a7fd21cp@chr9:138904824..138904829, +
1.55e-98FFCP PHASE1:Hg19::chr6:166581590..166581596,+#_997c583b23c812a0dc17c1a86a7fd21cp@chr6:166581590..166581596, +
1.55e-98FFCP PHASE1:Hg19::chr4:8046990..8046993,-#_997c583b23c812a0dc17c1a86a7fd21cp@chr4:8046990..8046993, -
1.55e-98FFCP PHASE1:Hg19::chr17:76475275..76475285,-#_997c583b23c812a0dc17c1a86a7fd21cp@chr17:76475275..76475285, -
1.55e-98FFCP PHASE1:Hg19::chr3:6686484..6686491,+#_997c583b23c812a0dc17c1a86a7fd21cp@chr3:6686484..6686491, +
1.55e-98FFCP PHASE1:Hg19::chr2:77581116..77581120,-#_997c583b23c812a0dc17c1a86a7fd21cp@chr2:77581116..77581120, -
1.55e-98FFCP PHASE1:Hg19::chr6:39962337..39962342,+#_997c583b23c812a0dc17c1a86a7fd21cp@chr6:39962337..39962342, +
1.55e-98FFCP PHASE1:Hg19::chr14:53594794..53594799,+#_997c583b23c812a0dc17c1a86a7fd21cp@chr14:53594794..53594799, +
1.55e-98FFCP PHASE2:Hg19::chr12:122458855..122458857,+#_997c583b23c812a0dc17c1a86a7fd21cp16@BCL7A
1.55e-98FFCP PHASE2:Hg19::chr21:20747453..20747465,-#_997c583b23c812a0dc17c1a86a7fd21cp@chr21:20747453..20747465, -
1.55e-98FFCP PHASE2:Hg19::chrX:42727038..42727047,-#_997c583b23c812a0dc17c1a86a7fd21cp@chrX:42727038..42727047, -
1.55e-98FFCP PHASE1:Hg19::chr4:3881462..3881469,-#_997c583b23c812a0dc17c1a86a7fd21cp@chr4:3881462..3881469, -
1.55e-98FFCP PHASE2:Hg19::chr11:26124040..26124064,-#_997c583b23c812a0dc17c1a86a7fd21cp@chr11:26124040..26124064, -
1.55e-98FFCP PHASE1:Hg19::chr3:158747347..158747353,+#_997c583b23c812a0dc17c1a86a7fd21cp@chr3:158747347..158747353, +
1.55e-98FFCP PHASE2:Hg19::chr6:164466345..164466352,+#_997c583b23c812a0dc17c1a86a7fd21cp@chr6:164466345..164466352, +
1.55e-98FFCP PHASE2:Hg19::chr1:101853882..101853891,-#_997c583b23c812a0dc17c1a86a7fd21cp@chr1:101853882..101853891, -
1.55e-98FFCP PHASE1:Hg19::chr12:40953942..40953946,+#_997c583b23c812a0dc17c1a86a7fd21cp@chr12:40953942..40953946, +
1.55e-98FFCP PHASE2:Hg19::chr4:176353908..176353917,-#_997c583b23c812a0dc17c1a86a7fd21cp@chr4:176353908..176353917, -
1.55e-98FFCP PHASE1:Hg19::chr17:76471163..76471166,+#_997c583b23c812a0dc17c1a86a7fd21cp@chr17:76471163..76471166, +
1.55e-98FFCP PHASE1:Hg19::chr6:164466325..164466331,+#_997c583b23c812a0dc17c1a86a7fd21cp@chr6:164466325..164466331, +
1.55e-98FFCP PHASE2:Hg19::chr12:122462770..122462775,+#_997c583b23c812a0dc17c1a86a7fd21cp@chr12:122462770..122462775, +
1.55e-98FFCP PHASE2:Hg19::chr12:40991131..40991149,+#_997c583b23c812a0dc17c1a86a7fd21cp@chr12:40991131..40991149, +
1.55e-98FFCP PHASE2:Hg19::chr8:128270027..128270033,-#_997c583b23c812a0dc17c1a86a7fd21cp@chr8:128270027..128270033, -

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