FFCP PHASE1:Mm9::chr13:19040213..19040286,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=218038 | |EntrezGene=218038 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=Q7TQF7,Q8BXH2 | |UniProt=Q7TQF7,Q8BXH2 | ||
|association_with_transcript=0bp_to_ENSMUST00000003345,NM_175007,uc007pol.1,uc007pom.1,uc007pon.1_5end | |association_with_transcript=0bp_to_ENSMUST00000003345,NM_175007,uc007pol.1,uc007pom.1,uc007pon.1_5end | ||
|cluster_id=chr13:19040213..19040286,+ | |||
|description=CAGE_peak_1_at_Amph_5end | |description=CAGE_peak_1_at_Amph_5end | ||
|id=chr13:19040213..19040286,+ | |id=chr13:19040213..19040286,+ | ||
|ontology_enrichment_celltype=CL:0000540!1.05e-15!33;CL:0000047!1.05e-15!33;CL:0000031!1.05e-15!33;CL:0000404!1.05e-15!33;CL:0000221!7.91e-14!44;CL:0000133!7.91e-14!44;CL:0002319!1.31e-13!43;CL:0000117!4.31e-12!23;CL:0000337!4.31e-12!23;CL:0000393!3.23e-10!39;CL:0000211!3.23e-10!39;CL:0000055!1.21e-08!50 | |ontology_enrichment_celltype=CL:0000540!1.05e-15!33;CL:0000047!1.05e-15!33;CL:0000031!1.05e-15!33;CL:0000404!1.05e-15!33;CL:0000221!7.91e-14!44;CL:0000133!7.91e-14!44;CL:0002319!1.31e-13!43;CL:0000117!4.31e-12!23;CL:0000337!4.31e-12!23;CL:0000393!3.23e-10!39;CL:0000211!3.23e-10!39;CL:0000055!1.21e-08!50 | ||
|ontology_enrichment_celltype_v019_2=CL:0000540,2.55e-16,33;CL:0000047,2.55e-16,33;CL:0000031,2.55e-16,33;CL:0000404,2.55e-16,33;CL:0000221,1.61e-14,44;CL:0000133,1.61e-14,44;CL:0002319,2.71e-14,43;CL:0000117,1.51e-12,23;CL:0000337,1.51e-12,23;CL:0000393,8.51e-11,39;CL:0000211,8.51e-11,39 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!8.16e-33!73;UBERON:0005743!8.16e-33!73;UBERON:0000073!1.44e-32!75;UBERON:0001016!1.44e-32!75;UBERON:0004121!4.82e-30!102;UBERON:0000924!4.82e-30!102;UBERON:0006601!4.82e-30!102;UBERON:0002346!1.24e-28!71;UBERON:0003075!1.24e-28!71;UBERON:0007284!1.24e-28!71;UBERON:0000033!5.58e-26!63;UBERON:0001049!3.88e-24!52;UBERON:0005068!3.88e-24!52;UBERON:0006241!3.88e-24!52;UBERON:0007135!3.88e-24!52;UBERON:0000955!4.36e-23!50;UBERON:0006238!4.36e-23!50;UBERON:0003056!1.32e-22!49;UBERON:0002616!2.26e-22!49;UBERON:0003080!4.83e-19!40;UBERON:0002780!2.02e-18!39;UBERON:0001890!2.02e-18!39;UBERON:0006240!2.02e-18!39;UBERON:0002020!8.09e-18!34;UBERON:0002791!5.21e-15!29;UBERON:0003528!5.21e-15!29;UBERON:0001893!5.21e-15!29;UBERON:0007811!8.96e-13!86;UBERON:0000153!3.38e-12!94;UBERON:0000956!6.17e-11!21;UBERON:0001869!6.17e-11!21;UBERON:0000203!6.17e-11!21;UBERON:0002619!2.08e-09!17;UBERON:0000468!8.50e-09!333;UBERON:0002021!5.82e-08!10;UBERON:0000411!5.82e-08!10;UBERON:0001950!5.82e-08!10 | |ontology_enrichment_uberon=UBERON:0001017!8.16e-33!73;UBERON:0005743!8.16e-33!73;UBERON:0000073!1.44e-32!75;UBERON:0001016!1.44e-32!75;UBERON:0004121!4.82e-30!102;UBERON:0000924!4.82e-30!102;UBERON:0006601!4.82e-30!102;UBERON:0002346!1.24e-28!71;UBERON:0003075!1.24e-28!71;UBERON:0007284!1.24e-28!71;UBERON:0000033!5.58e-26!63;UBERON:0001049!3.88e-24!52;UBERON:0005068!3.88e-24!52;UBERON:0006241!3.88e-24!52;UBERON:0007135!3.88e-24!52;UBERON:0000955!4.36e-23!50;UBERON:0006238!4.36e-23!50;UBERON:0003056!1.32e-22!49;UBERON:0002616!2.26e-22!49;UBERON:0003080!4.83e-19!40;UBERON:0002780!2.02e-18!39;UBERON:0001890!2.02e-18!39;UBERON:0006240!2.02e-18!39;UBERON:0002020!8.09e-18!34;UBERON:0002791!5.21e-15!29;UBERON:0003528!5.21e-15!29;UBERON:0001893!5.21e-15!29;UBERON:0007811!8.96e-13!86;UBERON:0000153!3.38e-12!94;UBERON:0000956!6.17e-11!21;UBERON:0001869!6.17e-11!21;UBERON:0000203!6.17e-11!21;UBERON:0002619!2.08e-09!17;UBERON:0000468!8.50e-09!333;UBERON:0002021!5.82e-08!10;UBERON:0000411!5.82e-08!10;UBERON:0001950!5.82e-08!10 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.21e-34,73;UBERON:0001016,4.02e-34,75;UBERON:0002346,1.37e-30,64;UBERON:0003075,1.37e-30,64;UBERON:0007284,1.37e-30,64;UBERON:0004121,4.52e-30,95;UBERON:0000924,4.52e-30,95;UBERON:0006601,4.52e-30,95;UBERON:0000073,1.18e-26,54;UBERON:0001049,2.55e-25,52;UBERON:0005068,2.55e-25,52;UBERON:0006241,2.55e-25,52;UBERON:0007135,2.55e-25,52;UBERON:0010371,2.72e-24,73;UBERON:0003056,1.62e-23,49;UBERON:0000955,3.02e-22,47;UBERON:0006238,3.02e-22,47;UBERON:0002616,1.63e-21,46;UBERON:0010314,2.48e-20,92;UBERON:0003080,8.45e-20,40;UBERON:0002780,3.75e-19,39;UBERON:0001890,3.75e-19,39;UBERON:0006240,3.75e-19,39;UBERON:0002020,1.60e-18,34;UBERON:0003528,1.36e-15,29;UBERON:0002791,1.36e-15,29;UBERON:0001893,1.36e-15,29;UBERON:0000956,2.42e-11,21;UBERON:0001869,2.42e-11,21;UBERON:0000203,2.42e-11,21;UBERON:0002619,9.49e-10,17;UBERON:0002021,3.07e-08,10;UBERON:0000411,3.07e-08,10;UBERON:0001950,3.07e-08,10 | |||
|phase1_expression=26.424559772291,0.348975407639361,0,0,0,0.16787927191189,1.16806320297763,0.258246646883153,0.140788722151667,0,0,0,0,0,0.333109761815663,0,0,0.157731082679119,0,0,42.0113853346285,0,0,0.639969691173627,0.91763712426868,0,0,0.215471232685889,0.190023419456374,0,0.886922042621219,0,0,0,0.288851619751275,0.166234645358492,0,0,0,0,0,0,0,0,0.202753862439029,0.183546752161682,0,7.41285531693518,3.29529274101708,3.11087838518853,8.67915814077248,8.62515386189829,0,0,0,0.257259436035947,0,0,65.3482168576501,61.8919445748278,63.3831403506179,4.40497891689872,4.4464739805557,0,0,0,4.79360176829448,4.2264013585371,26.9592992002042,30.6463480012938,26.7112700916255,131.685103810153,129.649833538597,39.4420373472152,40.7343251827505,44.122501757281,143.150645299205,176.846963247985,163.744564451156,64.8880535632554,69.3476338506265,75.0115253601734,138.753950503686,111.426996786273,131.864887831387,145.546521223992,167.001981577348,110.348471928578,3.18050011999373,7.3304413303582,0,0,0,0.539703191637817,0,0,8.14577636764161,0,0,0,17.182897212755,0,0,0,0.216491041011214,0.253359865475099,0,6.96521666286266,7.25026074212081,7.71899123137089,5.03107447621794,5.48037860961854,4.84292544237723,5.27529241934179,5.17390311397101,3.76999773989026,0,1.01219549843938,0,1.61766849947409,0,0.484875253135222,0,209.338269863256,236.046438578764,0.766371165625774,0,0,0,172.109444676141,117.120154321568,73.1308329296871,197.116779098042,215.823845986799,161.243522578219,154.12919991437,1.12023300235348,0.746441823660558,0,62.0803474865098,17.0457780281142,20.4612872945791,25.2086981727489,23.2085419467001,34.3584320714206,39.7152532883034,34.9507432607789,197.390671873869,2.58681591519411,3.02569728268511,1.23165786914764,2.19195732427575,3.61461423993277,1.74126083261083,3.49829631893504,3.78165106955137,0,0,0,5.17814431338755,3.51789089971644,2.88099298337624,0.710234206755631,0.590292695242212,0.925602677324269,0.232533944750408,0,0.700592054203017,0.658239399653922,1.14917224855367,1.94565142910054,2.19299981137998,1.97595103761946,1.74468344388483,223.117635426539,108.358556835387,0,1.85115396664481,8.74481827194459,5.34144345279009,4.38149368495117,4.23535401709019,3.33567065767305,3.61428689613862,0.949058123089023,3.29397909448022,2.76468729680296,5.37182474511107,5.26403035221624,0,2.80979464837102,1.39398891278057,10.8110703543257,14.8523066392647,19.1603150644237,16.2921062276251,15.1282939990748,14.0271639780637,2.21327879934901,1.91893192373483,1.72698600625512,1.23397163921801,0,1.33476084572875,1.76903095601883,1.12431056192427,1.21716072833102,0.72353147925725,0.50925170356284,0.287696137450811,0.162135226775035,0.274561413188081,1.43768206527355,1.86070473834252,0,0.252578877947112,0,0,20.3228509183265,2.84237117655727,1.79261474086228,1.86719594352707,3.28566347603903,7.70528784232352,8.09348379012447,8.19561321002755,41.6156780440344,40.306573516077,41.2987850822892,28.3483534458227,33.155516518252,21.8420078458082,0,0,0,0.551873492609465,199.082731584862,188.476392040263,0,1.51482556322624,25.871673992133,23.8167634020949,38.1299413987054,34.4115069051675,46.1193255350556,56.0491530961888,29.1463705205924,30.9791209385991,38.7382022387593,203.717714611426,2.2710413633323,2.67098405500883,3.90928702448583,3.29940245945071,1.32745138339963,2.91336763385978,1.209294227859,1.69744571780308,0.885905678642318,3.07435147943927,2.84271122485043,1.81766864738753,1.42598951353889,3.16036757935816,1.05418608574999,2.06271086496374,98.3870460628447,11.1637878299412,10.3486947026204,17.5756368725906,28.551777616406,26.3985850051064,36.5298825736709,44.4518825707315,0.469343416127421,0.21183207086382,3.74898276693435,0.98931751764888,0.645857706783622,0.844380948994182,0.477489376012546,0.820704498725306,1.45740418314925,175.412335701942,0.512612642393558,0.412773735926445,0,0.565105371014073,0.820165366326151,0.686334519619568,0,0.139951452323658,0,0.954670618015114,7.27572785236611,3.86306987541013,4.10420295122845,3.97267762427491,2.40198820120795,6.06889558731693,4.71124697634415,1.57053565190418,2.33306951925227,0,0,1.79419855252775,1.48912641411388,0.972255941720238,1.16243841129958,0.506868376472335,0.58678619322877,0.651021924219751,0.524296722128554,0.241584120826006,0,1.58005560314089,10.1362607645082,6.67621221571377,2.07873316764472,1.07416017400489,1.58945083825012,0.841368146639782,0.443068581523732,0.605798699688886,0.457240839929999,0.100826185136841,0.38983152295901,0.577271049841977,0.233753804363138,2.94749498699775,6.88156455459601,2.69141569828427,3.18980771091749,4.25017106870819,1.50145980360946,1.64836461840539,1.50057865355346,0.501572104035363,268.821877085724,245.353351058325,261.813249641804,222.206164770388,187.712610417156,200.179382808271,177.530917560965,189.134905354173,205.273511269845,200.891000959706,8.82192454465502,9.17757208822371,11.6098851912811,11.6691224192781,18.0267319860065,16.3620722520513,18.4464784075341,16.0707344646337,22.4643446714271,15.9199243411192,14.448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| |phase1_expression=26.424559772291,0.348975407639361,0,0,0,0.16787927191189,1.16806320297763,0.258246646883153,0.140788722151667,0,0,0,0,0,0.333109761815663,0,0,0.157731082679119,0,0,42.0113853346285,0,0,0.639969691173627,0.91763712426868,0,0,0.215471232685889,0.190023419456374,0,0.886922042621219,0,0,0,0.288851619751275,0.166234645358492,0,0,0,0,0,0,0,0,0.202753862439029,0.183546752161682,0,7.41285531693518,3.29529274101708,3.11087838518853,8.67915814077248,8.62515386189829,0,0,0,0.257259436035947,0,0,65.3482168576501,61.8919445748278,63.3831403506179,4.40497891689872,4.4464739805557,0,0,0,4.79360176829448,4.2264013585371,26.9592992002042,30.6463480012938,26.7112700916255,131.685103810153,129.649833538597,39.4420373472152,40.7343251827505,44.122501757281,143.150645299205,176.846963247985,163.744564451156,64.8880535632554,69.3476338506265,75.0115253601734,138.753950503686,111.426996786273,131.864887831387,145.546521223992,167.001981577348,110.348471928578,3.18050011999373,7.3304413303582,0,0,0,0.539703191637817,0,0,8.14577636764161,0,0,0,17.182897212755,0,0,0,0.216491041011214,0.253359865475099,0,6.96521666286266,7.25026074212081,7.71899123137089,5.03107447621794,5.48037860961854,4.84292544237723,5.27529241934179,5.17390311397101,3.76999773989026,0,1.01219549843938,0,1.61766849947409,0,0.484875253135222,0,209.338269863256,236.046438578764,0.766371165625774,0,0,0,172.109444676141,117.120154321568,73.1308329296871,197.116779098042,215.823845986799,161.243522578219,154.12919991437,1.12023300235348,0.746441823660558,0,62.0803474865098,17.0457780281142,20.4612872945791,25.2086981727489,23.2085419467001,34.3584320714206,39.7152532883034,34.9507432607789,197.390671873869,2.58681591519411,3.02569728268511,1.23165786914764,2.19195732427575,3.61461423993277,1.74126083261083,3.49829631893504,3.78165106955137,0,0,0,5.17814431338755,3.51789089971644,2.88099298337624,0.710234206755631,0.590292695242212,0.925602677324269,0.232533944750408,0,0.700592054203017,0.658239399653922,1.14917224855367,1.94565142910054,2.19299981137998,1.97595103761946,1.74468344388483,223.117635426539,108.358556835387,0,1.85115396664481,8.74481827194459,5.34144345279009,4.38149368495117,4.23535401709019,3.33567065767305,3.61428689613862,0.949058123089023,3.29397909448022,2.76468729680296,5.37182474511107,5.26403035221624,0,2.80979464837102,1.39398891278057,10.8110703543257,14.8523066392647,19.1603150644237,16.2921062276251,15.1282939990748,14.0271639780637,2.21327879934901,1.91893192373483,1.72698600625512,1.23397163921801,0,1.33476084572875,1.76903095601883,1.12431056192427,1.21716072833102,0.72353147925725,0.50925170356284,0.287696137450811,0.162135226775035,0.274561413188081,1.43768206527355,1.86070473834252,0,0.252578877947112,0,0,20.3228509183265,2.84237117655727,1.79261474086228,1.86719594352707,3.28566347603903,7.70528784232352,8.09348379012447,8.19561321002755,41.6156780440344,40.306573516077,41.2987850822892,28.3483534458227,33.155516518252,21.8420078458082,0,0,0,0.551873492609465,199.082731584862,188.476392040263,0,1.51482556322624,25.871673992133,23.8167634020949,38.1299413987054,34.4115069051675,46.1193255350556,56.0491530961888,29.1463705205924,30.9791209385991,38.7382022387593,203.717714611426,2.2710413633323,2.67098405500883,3.90928702448583,3.29940245945071,1.32745138339963,2.91336763385978,1.209294227859,1.69744571780308,0.885905678642318,3.07435147943927,2.84271122485043,1.81766864738753,1.42598951353889,3.16036757935816,1.05418608574999,2.06271086496374,98.3870460628447,11.1637878299412,10.3486947026204,17.5756368725906,28.551777616406,26.3985850051064,36.5298825736709,44.4518825707315,0.469343416127421,0.21183207086382,3.74898276693435,0.98931751764888,0.645857706783622,0.844380948994182,0.477489376012546,0.820704498725306,1.45740418314925,175.412335701942,0.512612642393558,0.412773735926445,0,0.565105371014073,0.820165366326151,0.686334519619568,0,0.139951452323658,0,0.954670618015114,7.27572785236611,3.86306987541013,4.10420295122845,3.97267762427491,2.40198820120795,6.06889558731693,4.71124697634415,1.57053565190418,2.33306951925227,0,0,1.79419855252775,1.48912641411388,0.972255941720238,1.16243841129958,0.506868376472335,0.58678619322877,0.651021924219751,0.524296722128554,0.241584120826006,0,1.58005560314089,10.1362607645082,6.67621221571377,2.07873316764472,1.07416017400489,1.58945083825012,0.841368146639782,0.443068581523732,0.605798699688886,0.457240839929999,0.100826185136841,0.38983152295901,0.577271049841977,0.233753804363138,2.94749498699775,6.88156455459601,2.69141569828427,3.18980771091749,4.25017106870819,1.50145980360946,1.64836461840539,1.50057865355346,0.501572104035363,268.821877085724,245.353351058325,261.813249641804,222.206164770388,187.712610417156,200.179382808271,177.530917560965,189.134905354173,205.273511269845,200.891000959706,8.82192454465502,9.17757208822371,11.6098851912811,11.6691224192781,18.0267319860065,16.3620722520513,18.4464784075341,16.0707344646337,22.4643446714271,15.9199243411192,14.448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| ||
|short_description=p1@Amph | |short_description=p1@Amph | ||
}} | }} |
Latest revision as of 05:17, 27 September 2015
Short description: | p1@Amph |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Amph_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000003345, NM_175007, uc007pol.1, uc007pom.1, uc007pon.1_5end |
EntrezGene: | Amph |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 2.55e-16 | 33 |
neuronal stem cell | 2.55e-16 | 33 |
neuroblast | 2.55e-16 | 33 |
electrically signaling cell | 2.55e-16 | 33 |
ectodermal cell | 1.61e-14 | 44 |
neurectodermal cell | 1.61e-14 | 44 |
neural cell | 2.71e-14 | 43 |
CNS neuron (sensu Vertebrata) | 1.51e-12 | 23 |
neuroblast (sensu Vertebrata) | 1.51e-12 | 23 |
electrically responsive cell | 8.51e-11 | 39 |
electrically active cell | 8.51e-11 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 2.21e-34 | 73 |
nervous system | 4.02e-34 | 75 |
neurectoderm | 1.37e-30 | 64 |
neural plate | 1.37e-30 | 64 |
presumptive neural plate | 1.37e-30 | 64 |
ectoderm-derived structure | 4.52e-30 | 95 |
ectoderm | 4.52e-30 | 95 |
presumptive ectoderm | 4.52e-30 | 95 |
regional part of nervous system | 1.18e-26 | 54 |
neural tube | 2.55e-25 | 52 |
neural rod | 2.55e-25 | 52 |
future spinal cord | 2.55e-25 | 52 |
neural keel | 2.55e-25 | 52 |
ecto-epithelium | 2.72e-24 | 73 |
pre-chordal neural plate | 1.62e-23 | 49 |
brain | 3.02e-22 | 47 |
future brain | 3.02e-22 | 47 |
regional part of brain | 1.63e-21 | 46 |
structure with developmental contribution from neural crest | 2.48e-20 | 92 |
anterior neural tube | 8.45e-20 | 40 |
regional part of forebrain | 3.75e-19 | 39 |
forebrain | 3.75e-19 | 39 |
future forebrain | 3.75e-19 | 39 |
gray matter | 1.60e-18 | 34 |
brain grey matter | 1.36e-15 | 29 |
regional part of telencephalon | 1.36e-15 | 29 |
telencephalon | 1.36e-15 | 29 |
cerebral cortex | 2.42e-11 | 21 |
cerebral hemisphere | 2.42e-11 | 21 |
pallium | 2.42e-11 | 21 |
regional part of cerebral cortex | 9.49e-10 | 17 |
occipital lobe | 3.07e-08 | 10 |
visual cortex | 3.07e-08 | 10 |
neocortex | 3.07e-08 | 10 |