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{{CL
{{CL
|id=CL:0000893
|alt_id=
|name=thymocyte
|namespace=cell
|def="An immature T cell located in the thymus." [GO_REF:0000031, GOC:add, GOC:tfm, PMID:12415312]
|xref=BTO:0001372;;FMA:72202
|is_a=CL:0002420
|synonym="immature T cell" BROAD [];;"immature T lymphocyte" BROAD [];;"immature T-cell" BROAD [];;"immature T-lymphocyte" BROAD [];;"thymic lymphocyte" EXACT []
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="An immature T cell located in the thymus." [GO_REF:0000031, GOC:add, GOC:tfm, PMID:12415312]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0000893
|is_a=CL:0002420
|is_obsolete=
|located_in=
|located_in=
|name=thymocyte
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0002370
|part_of=UBERON:0002370
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|subset=
|synonym="immature T cell" BROAD [];;"immature T lymphocyte" BROAD [];;"immature T-cell" BROAD [];;"immature T-lymphocyte" BROAD [];;"thymic lymphocyte" EXACT []
|union_of=
|xref=BTO:0001372;;FMA:72202;;XAO:0003159
}}
}}

Latest revision as of 16:38, 12 September 2014

Name:thymocyte
Namespace:FANTOM
Definition:"An immature T cell located in the thymus." [GO_REF:0000031, GOC:add, GOC:tfm, PMID:12415312]
Xrefs:
links:

BTO:0001372
FMA:72202

XAO:0003159
Synonyms: "immature T cell" BROAD []
"immature T lymphocyte" BROAD []
"immature T-cell" BROAD []
"immature T-lymphocyte" BROAD []
"thymic lymphocyte" EXACT []


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0002420(immature T cell)
part_of:UBERON:0002370(thymus)



Children


is a:CL:0000805 (immature single positive thymocyte),CL:0000809 (double-positive, alpha-beta thymocyte),CL:0000810 (CD4-positive, alpha-beta thymocyte),CL:0002489 (double negative thymocyte)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.



Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000893 (thymocyte), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.29e-195FFCP PHASE2:Hg19::chr2:162762361..162762364,+#_0204c4e49be19bc7088293686d187f76p@chr2:162762361..162762364, +
3.29e-195FFCP PHASE1:Hg19::chr2:162762361..162762364,+#_0204c4e49be19bc7088293686d187f76p@chr2:162762361..162762364, +
1.55e-98FFCP PHASE2:Hg19::chr8:67519931..67519935,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr8:67519931..67519935, -
1.55e-98FFCP PHASE2:Hg19::chr15:69972162..69972169,+#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr15:69972162..69972169, +
1.55e-98FFCP PHASE2:Hg19::chr6:128263833..128263838,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr6:128263833..128263838, -
1.55e-98FFCP PHASE1:Hg19::chr15:91989133..91989141,+#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr15:91989133..91989141, +
1.55e-98FFCP PHASE2:Hg19::chr1:189141918..189141929,+#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr1:189141918..189141929, +
1.55e-98FFCP PHASE1:Hg19::chr2:162762231..162762234,+#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr2:162762231..162762234, +
1.55e-98FFCP PHASE1:Hg19::chr7:38287827..38287832,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr7:38287827..38287832, -
1.55e-98FFCP PHASE2:Hg19::chr4:133657651..133657654,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr4:133657651..133657654, -
1.55e-98FFCP PHASE2:Hg19::chr1:237900222..237900230,+#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr1:237900222..237900230, +
1.55e-98FFCP PHASE1:Hg19::chr7:19479837..19479844,+#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr7:19479837..19479844, +
1.55e-98FFCP PHASE2:Hg19::chr15:91989133..91989141,+#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr15:91989133..91989141, +
1.55e-98FFCP PHASE2:Hg19::chr22:46041912..46041915,+#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr22:46041912..46041915, +
1.55e-98FFCP PHASE1:Hg19::chr4:175858389..175858405,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr4:175858389..175858405, -
1.55e-98FFCP PHASE2:Hg19::chr10:11846830..11846860,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr10:11846830..11846860, -
1.55e-98FFCP PHASE2:Hg19::chr4:105805755..105805761,+#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr4:105805755..105805761, +
1.55e-98FFCP PHASE2:Hg19::chr8:75251775..75251785,+#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr8:75251775..75251785, +
1.55e-98FFCP PHASE2:Hg19::chr4:175842537..175842553,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr4:175842537..175842553, -
1.55e-98FFCP PHASE1:Hg19::chr9:87797549..87797564,+#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr9:87797549..87797564, +
1.55e-98FFCP PHASE1:Hg19::chr4:134707420..134707442,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr4:134707420..134707442, -
1.55e-98FFCP PHASE1:Hg19::chr8:51970952..51970959,+#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr8:51970952..51970959, +
1.55e-98FFCP PHASE1:Hg19::chr9:116857558..116857566,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr9:116857558..116857566, -
1.55e-98FFCP PHASE2:Hg19::chr9:4544914..4544917,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr9:4544914..4544917, -
1.55e-98FFCP PHASE1:Hg19::chr2:202521027..202521058,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr2:202521027..202521058, -
1.55e-98FFCP PHASE1:Hg19::chr15:92006659..92006679,+#_0b853c5c789b2db9ac392b1aea3ec3c8p2@uc002bqw.2
1.55e-98FFCP PHASE1:Hg19::chr16:67022522..67022529,+#_0b853c5c789b2db9ac392b1aea3ec3c8p12@CES4A
1.55e-98FFCP PHASE2:Hg19::chr17:14101134..14101143,+#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr17:14101134..14101143, +
1.55e-98FFCP PHASE2:Hg19::chr21:43982135..43982142,+#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr21:43982135..43982142, +
1.55e-98FFCP PHASE2:Hg19::chr15:92006659..92006679,+#_0b853c5c789b2db9ac392b1aea3ec3c8p2@uc002bqw.2
1.55e-98FFCP PHASE2:Hg19::chr2:162762231..162762234,+#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr2:162762231..162762234, +
1.55e-98FFCP PHASE2:Hg19::chr1:200990231..200990238,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr1:200990231..200990238, -
1.55e-98FFCP PHASE2:Hg19::chr7:38287827..38287832,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr7:38287827..38287832, -
1.55e-98FFCP PHASE1:Hg19::chr2:146687090..146687095,+#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr2:146687090..146687095, +
1.55e-98FFCP PHASE2:Hg19::chr4:175858389..175858405,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr4:175858389..175858405, -
1.55e-98FFCP PHASE1:Hg19::chr21:47278815..47278834,+#_0b853c5c789b2db9ac392b1aea3ec3c8p6@PCBP3
1.55e-98FFCP PHASE1:Hg19::chr4:134707449..134707458,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr4:134707449..134707458, -
1.55e-98FFCP PHASE2:Hg19::chr7:19479837..19479844,+#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr7:19479837..19479844, +
1.55e-98FFCP PHASE2:Hg19::chr21:39490932..39490937,+#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr21:39490932..39490937, +
1.55e-98FFCP PHASE1:Hg19::chr8:16739475..16739490,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr8:16739475..16739490, -
1.55e-98FFCP PHASE1:Hg19::chr4:128884938..128884941,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr4:128884938..128884941, -
1.55e-98FFCP PHASE2:Hg19::chr9:87797549..87797564,+#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr9:87797549..87797564, +
1.55e-98FFCP PHASE2:Hg19::chr4:134707420..134707442,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr4:134707420..134707442, -
1.55e-98FFCP PHASE2:Hg19::chr9:116857558..116857566,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr9:116857558..116857566, -
1.55e-98FFCP PHASE2:Hg19::chr8:51970952..51970959,+#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr8:51970952..51970959, +
1.55e-98FFCP PHASE1:Hg19::chr1:237900222..237900230,+#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr1:237900222..237900230, +
1.55e-98FFCP PHASE1:Hg19::chr14:22962827..22962830,+#_0b853c5c789b2db9ac392b1aea3ec3c8p3@uc001weo.2
1.55e-98FFCP PHASE1:Hg19::chr4:175842470..175842486,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr4:175842470..175842486, -
1.55e-98FFCP PHASE2:Hg19::chr16:67022368..67022374,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr16:67022368..67022374, -
1.55e-98FFCP PHASE1:Hg19::chr2:141989111..141989114,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr2:141989111..141989114, -
1.55e-98FFCP PHASE1:Hg19::chr5:24272119..24272147,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr5:24272119..24272147, -
1.55e-98FFCP PHASE1:Hg19::chr15:92006720..92006726,+#_0b853c5c789b2db9ac392b1aea3ec3c8p1@uc002bqw.2
1.55e-98FFCP PHASE2:Hg19::chr2:202521027..202521058,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr2:202521027..202521058, -
1.55e-98FFCP PHASE2:Hg19::chr17:14103251..14103258,+#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr17:14103251..14103258, +
1.55e-98FFCP PHASE2:Hg19::chr14:22962827..22962830,+#_0b853c5c789b2db9ac392b1aea3ec3c8p3@uc001weo.2
1.55e-98FFCP PHASE1:Hg19::chr8:50081052..50081075,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr8:50081052..50081075, -
1.55e-98FFCP PHASE1:Hg19::chr4:2428062..2428080,+#_0b853c5c789b2db9ac392b1aea3ec3c8p1@uc003gfa.1
1.55e-98FFCP PHASE2:Hg19::chr15:92006720..92006726,+#_0b853c5c789b2db9ac392b1aea3ec3c8p1@uc002bqw.2
1.55e-98FFCP PHASE1:Hg19::chr4:176123823..176123829,+#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr4:176123823..176123829, +
1.55e-98FFCP PHASE1:Hg19::chr8:114877856..114877881,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr8:114877856..114877881, -
1.55e-98FFCP PHASE1:Hg19::chr10:11846830..11846860,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr10:11846830..11846860, -
1.55e-98FFCP PHASE1:Hg19::chr2:146998057..146998070,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr2:146998057..146998070, -
1.55e-98FFCP PHASE1:Hg19::chr4:134707474..134707504,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr4:134707474..134707504, -
1.55e-98FFCP PHASE2:Hg19::chr2:146687090..146687095,+#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr2:146687090..146687095, +
1.55e-98FFCP PHASE1:Hg19::chr7:117926347..117926353,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr7:117926347..117926353, -
1.55e-98FFCP PHASE1:Hg19::chr1:189141918..189141929,+#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr1:189141918..189141929, +
1.55e-98FFCP PHASE2:Hg19::chr4:134707449..134707458,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr4:134707449..134707458, -
1.55e-98FFCP PHASE1:Hg19::chr9:72117884..72117889,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr9:72117884..72117889, -
1.55e-98FFCP PHASE1:Hg19::chr4:133657589..133657598,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr4:133657589..133657598, -
1.55e-98FFCP PHASE2:Hg19::chr8:16739475..16739490,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr8:16739475..16739490, -
1.55e-98FFCP PHASE1:Hg19::chr17:14101134..14101143,+#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr17:14101134..14101143, +
1.55e-98FFCP PHASE2:Hg19::chr8:114877856..114877881,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr8:114877856..114877881, -
1.55e-98FFCP PHASE1:Hg19::chr22:46041912..46041915,+#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr22:46041912..46041915, +
1.55e-98FFCP PHASE2:Hg19::chr4:128884938..128884941,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr4:128884938..128884941, -
1.55e-98FFCP PHASE1:Hg19::chr4:175842511..175842520,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr4:175842511..175842520, -
1.55e-98FFCP PHASE1:Hg19::chr3:192598433..192598481,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr3:192598433..192598481, -
1.55e-98FFCP PHASE2:Hg19::chr4:175842470..175842486,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr4:175842470..175842486, -
1.55e-98FFCP PHASE1:Hg19::chr21:43982135..43982142,+#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr21:43982135..43982142, +
1.55e-98FFCP PHASE1:Hg19::chr13:24623546..24623587,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr13:24623546..24623587, -
1.55e-98FFCP PHASE1:Hg19::chrX:133321044..133321049,+#_0b853c5c789b2db9ac392b1aea3ec3c8p@chrX:133321044..133321049, +
1.55e-98FFCP PHASE2:Hg19::chr2:141989111..141989114,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr2:141989111..141989114, -
1.55e-98FFCP PHASE1:Hg19::chr21:39490932..39490937,+#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr21:39490932..39490937, +
1.55e-98FFCP PHASE1:Hg19::chr4:111448516..111448521,+#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr4:111448516..111448521, +
1.55e-98FFCP PHASE2:Hg19::chr5:24272119..24272147,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr5:24272119..24272147, -
1.55e-98FFCP PHASE2:Hg19::chr13:24623546..24623587,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr13:24623546..24623587, -
1.55e-98FFCP PHASE2:Hg19::chr4:2428062..2428080,+#_0b853c5c789b2db9ac392b1aea3ec3c8p1@uc003gfa.1
1.55e-98FFCP PHASE2:Hg19::chr3:192598433..192598481,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr3:192598433..192598481, -
1.55e-98FFCP PHASE2:Hg19::chr8:50081052..50081075,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr8:50081052..50081075, -
1.55e-98FFCP PHASE2:Hg19::chr4:176123823..176123829,+#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr4:176123823..176123829, +
1.55e-98FFCP PHASE1:Hg19::chr8:67519931..67519935,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr8:67519931..67519935, -
1.55e-98FFCP PHASE2:Hg19::chr2:146998057..146998070,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr2:146998057..146998070, -
1.55e-98FFCP PHASE2:Hg19::chrX:133321044..133321049,+#_0b853c5c789b2db9ac392b1aea3ec3c8p@chrX:133321044..133321049, +
1.55e-98FFCP PHASE2:Hg19::chr4:134707474..134707504,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr4:134707474..134707504, -
1.55e-98FFCP PHASE2:Hg19::chr7:117926347..117926353,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr7:117926347..117926353, -
1.55e-98FFCP PHASE1:Hg19::chr4:133657651..133657654,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr4:133657651..133657654, -
1.55e-98FFCP PHASE1:Hg19::chr15:91989101..91989105,+#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr15:91989101..91989105, +
1.55e-98FFCP PHASE1:Hg19::chr3:152204326..152204345,+#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr3:152204326..152204345, +
1.55e-98FFCP PHASE1:Hg19::chr16:67022368..67022374,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr16:67022368..67022374, -
1.55e-98FFCP PHASE1:Hg19::chr17:14103251..14103258,+#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr17:14103251..14103258, +
1.55e-98FFCP PHASE1:Hg19::chr4:105805755..105805761,+#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr4:105805755..105805761, +

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