FFCP PHASE1:Mm9::chr2:28980492..28980568,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=269254 | |EntrezGene=269254 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=60 | |||
|TSSclassifier=NA | |||
|UniProt=A2AKX3 | |UniProt=A2AKX3 | ||
|association_with_transcript=0bp_to_ENSMUST00000061578,NM_198033,uc008izl.1,uc008izm.1_5end | |association_with_transcript=0bp_to_ENSMUST00000061578,NM_198033,uc008izl.1,uc008izm.1_5end | ||
|cluster_id=chr2:28980492..28980568,+ | |||
|description=CAGE_peak_2_at_Setx_5end | |description=CAGE_peak_2_at_Setx_5end | ||
|id=chr2:28980492..28980568,+ | |id=chr2:28980492..28980568,+ | ||
|ontology_enrichment_celltype=CL:0000117!3.79e-10!23;CL:0000337!3.79e-10!23;CL:0000540!9.80e-07!33;CL:0000047!9.80e-07!33;CL:0000031!9.80e-07!33;CL:0000404!9.80e-07!33 | |ontology_enrichment_celltype=CL:0000117!3.79e-10!23;CL:0000337!3.79e-10!23;CL:0000540!9.80e-07!33;CL:0000047!9.80e-07!33;CL:0000031!9.80e-07!33;CL:0000404!9.80e-07!33 | ||
|ontology_enrichment_celltype_v019_2=CL:0000117,3.40e-10,23;CL:0000337,3.40e-10,23;CL:0000540,9.19e-07,33;CL:0000047,9.19e-07,33;CL:0000031,9.19e-07,33;CL:0000404,9.19e-07,33 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!8.32e-24!63;UBERON:0003056!4.45e-20!49;UBERON:0000955!1.48e-18!50;UBERON:0006238!1.48e-18!50;UBERON:0002616!6.81e-18!49;UBERON:0001049!9.36e-18!52;UBERON:0005068!9.36e-18!52;UBERON:0006241!9.36e-18!52;UBERON:0007135!9.36e-18!52;UBERON:0002346!4.58e-17!71;UBERON:0003075!4.58e-17!71;UBERON:0007284!4.58e-17!71;UBERON:0003080!2.42e-16!40;UBERON:0002780!9.54e-16!39;UBERON:0001890!9.54e-16!39;UBERON:0006240!9.54e-16!39;UBERON:0001017!5.54e-15!73;UBERON:0005743!5.54e-15!73;UBERON:0007811!5.67e-15!86;UBERON:0002020!1.50e-14!34;UBERON:0004121!4.35e-14!102;UBERON:0000924!4.35e-14!102;UBERON:0006601!4.35e-14!102;UBERON:0000073!6.59e-14!75;UBERON:0001016!6.59e-14!75;UBERON:0000153!7.18e-14!94;UBERON:0002791!1.02e-13!29;UBERON:0003528!1.02e-13!29;UBERON:0001893!1.02e-13!29;UBERON:0000956!7.79e-10!21;UBERON:0001869!7.79e-10!21;UBERON:0000203!7.79e-10!21;UBERON:0002021!7.60e-08!10;UBERON:0000411!7.60e-08!10;UBERON:0001950!7.60e-08!10;UBERON:0002619!9.88e-08!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.21e-20,64;UBERON:0003075,1.21e-20,64;UBERON:0007284,1.21e-20,64;UBERON:0003056,3.73e-20,49;UBERON:0000073,3.02e-19,54;UBERON:0010371,1.40e-18,73;UBERON:0001049,5.05e-18,52;UBERON:0005068,5.05e-18,52;UBERON:0006241,5.05e-18,52;UBERON:0007135,5.05e-18,52;UBERON:0000955,4.46e-17,47;UBERON:0006238,4.46e-17,47;UBERON:0002616,2.00e-16,46;UBERON:0003080,2.13e-16,40;UBERON:0004121,3.76e-16,95;UBERON:0000924,3.76e-16,95;UBERON:0006601,3.76e-16,95;UBERON:0002780,8.44e-16,39;UBERON:0001890,8.44e-16,39;UBERON:0006240,8.44e-16,39;UBERON:0001017,3.16e-15,73;UBERON:0002020,1.34e-14,34;UBERON:0010314,1.36e-14,92;UBERON:0001016,3.89e-14,75;UBERON:0003528,9.28e-14,29;UBERON:0002791,9.28e-14,29;UBERON:0001893,9.28e-14,29;UBERON:0000956,7.43e-10,21;UBERON:0001869,7.43e-10,21;UBERON:0000203,7.43e-10,21;UBERON:0002021,7.03e-08,10;UBERON:0000411,7.03e-08,10;UBERON:0001950,7.03e-08,10;UBERON:0002619,9.66e-08,17 | |||
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| ||
|short_description=p2@Setx | |short_description=p2@Setx | ||
}} | }} |
Latest revision as of 12:23, 26 September 2015
Short description: | p2@Setx |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Setx_5end |
Coexpression cluster: | MCL_coexpression_mm9:60 |
Association with transcript: | 0bp_to_ENSMUST00000061578, NM_198033, uc008izl.1, uc008izm.1_5end |
EntrezGene: | Setx |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 3.40e-10 | 23 |
neuroblast (sensu Vertebrata) | 3.40e-10 | 23 |
neuron | 9.19e-07 | 33 |
neuronal stem cell | 9.19e-07 | 33 |
neuroblast | 9.19e-07 | 33 |
electrically signaling cell | 9.19e-07 | 33 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 1.21e-20 | 64 |
neural plate | 1.21e-20 | 64 |
presumptive neural plate | 1.21e-20 | 64 |
pre-chordal neural plate | 3.73e-20 | 49 |
regional part of nervous system | 3.02e-19 | 54 |
ecto-epithelium | 1.40e-18 | 73 |
neural tube | 5.05e-18 | 52 |
neural rod | 5.05e-18 | 52 |
future spinal cord | 5.05e-18 | 52 |
neural keel | 5.05e-18 | 52 |
brain | 4.46e-17 | 47 |
future brain | 4.46e-17 | 47 |
regional part of brain | 2.00e-16 | 46 |
anterior neural tube | 2.13e-16 | 40 |
ectoderm-derived structure | 3.76e-16 | 95 |
ectoderm | 3.76e-16 | 95 |
presumptive ectoderm | 3.76e-16 | 95 |
regional part of forebrain | 8.44e-16 | 39 |
forebrain | 8.44e-16 | 39 |
future forebrain | 8.44e-16 | 39 |
central nervous system | 3.16e-15 | 73 |
gray matter | 1.34e-14 | 34 |
structure with developmental contribution from neural crest | 1.36e-14 | 92 |
nervous system | 3.89e-14 | 75 |
brain grey matter | 9.28e-14 | 29 |
regional part of telencephalon | 9.28e-14 | 29 |
telencephalon | 9.28e-14 | 29 |
cerebral cortex | 7.43e-10 | 21 |
cerebral hemisphere | 7.43e-10 | 21 |
pallium | 7.43e-10 | 21 |
occipital lobe | 7.03e-08 | 10 |
visual cortex | 7.03e-08 | 10 |
neocortex | 7.03e-08 | 10 |
regional part of cerebral cortex | 9.66e-08 | 17 |