FFCP PHASE1:Mm9::chr11:49838811..49838876,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=59044 | |EntrezGene=59044 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=3 | |||
|TSSclassifier=NA | |||
|UniProt=Q5SVR5,Q8VEM1,Q5DTJ1 | |UniProt=Q5SVR5,Q8VEM1,Q5DTJ1 | ||
|association_with_transcript=0bp_to_ENSMUST00000054684,ENSMUST00000102776,NM_021540,uc007irk.1,uc007irl.1,uc007irm.1,uc007irn.1_5end | |association_with_transcript=0bp_to_ENSMUST00000054684,ENSMUST00000102776,NM_021540,uc007irk.1,uc007irl.1,uc007irm.1,uc007irn.1_5end | ||
|cluster_id=chr11:49838811..49838876,+ | |||
|description=CAGE_peak_1_at_Rnf130_5end | |description=CAGE_peak_1_at_Rnf130_5end | ||
|id=chr11:49838811..49838876,+ | |id=chr11:49838811..49838876,+ | ||
|ontology_enrichment_celltype=CL:0000117!6.19e-09!23;CL:0000337!6.19e-09!23;CL:0000393!1.07e-07!39;CL:0000211!1.07e-07!39;CL:0000540!1.39e-07!33;CL:0000047!1.39e-07!33;CL:0000031!1.39e-07!33;CL:0000404!1.39e-07!33;CL:0000723!5.52e-07!91;CL:0000048!5.52e-07!91 | |ontology_enrichment_celltype=CL:0000117!6.19e-09!23;CL:0000337!6.19e-09!23;CL:0000393!1.07e-07!39;CL:0000211!1.07e-07!39;CL:0000540!1.39e-07!33;CL:0000047!1.39e-07!33;CL:0000031!1.39e-07!33;CL:0000404!1.39e-07!33;CL:0000723!5.52e-07!91;CL:0000048!5.52e-07!91 | ||
|ontology_enrichment_celltype_v019_2=CL:0000117,6.19e-09,23;CL:0000337,6.19e-09,23;CL:0000393,1.07e-07,39;CL:0000211,1.07e-07,39;CL:0000540,1.39e-07,33;CL:0000047,1.39e-07,33;CL:0000031,1.39e-07,33;CL:0000404,1.39e-07,33;CL:0000723,5.70e-07,91;CL:0000048,5.70e-07,91 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!4.93e-11!75;UBERON:0001016!4.93e-11!75;UBERON:0001017!1.14e-10!73;UBERON:0005743!1.14e-10!73;UBERON:0004121!5.60e-10!102;UBERON:0000924!5.60e-10!102;UBERON:0006601!5.60e-10!102;UBERON:0002020!7.97e-10!34;UBERON:0001049!1.32e-09!52;UBERON:0005068!1.32e-09!52;UBERON:0006241!1.32e-09!52;UBERON:0007135!1.32e-09!52;UBERON:0000955!2.00e-09!50;UBERON:0006238!2.00e-09!50;UBERON:0002616!3.91e-09!49;UBERON:0000033!4.31e-09!63;UBERON:0000025!6.81e-09!114;UBERON:0004111!7.24e-09!122;UBERON:0002791!8.15e-09!29;UBERON:0003528!8.15e-09!29;UBERON:0001893!8.15e-09!29;UBERON:0002346!8.35e-08!71;UBERON:0003075!8.35e-08!71;UBERON:0007284!8.35e-08!71;UBERON:0003080!1.34e-07!40;UBERON:0002780!2.26e-07!39;UBERON:0001890!2.26e-07!39;UBERON:0006240!2.26e-07!39;UBERON:0002204!3.26e-07!32;UBERON:0003056!7.39e-07!49 | |ontology_enrichment_uberon=UBERON:0000073!4.93e-11!75;UBERON:0001016!4.93e-11!75;UBERON:0001017!1.14e-10!73;UBERON:0005743!1.14e-10!73;UBERON:0004121!5.60e-10!102;UBERON:0000924!5.60e-10!102;UBERON:0006601!5.60e-10!102;UBERON:0002020!7.97e-10!34;UBERON:0001049!1.32e-09!52;UBERON:0005068!1.32e-09!52;UBERON:0006241!1.32e-09!52;UBERON:0007135!1.32e-09!52;UBERON:0000955!2.00e-09!50;UBERON:0006238!2.00e-09!50;UBERON:0002616!3.91e-09!49;UBERON:0000033!4.31e-09!63;UBERON:0000025!6.81e-09!114;UBERON:0004111!7.24e-09!122;UBERON:0002791!8.15e-09!29;UBERON:0003528!8.15e-09!29;UBERON:0001893!8.15e-09!29;UBERON:0002346!8.35e-08!71;UBERON:0003075!8.35e-08!71;UBERON:0007284!8.35e-08!71;UBERON:0003080!1.34e-07!40;UBERON:0002780!2.26e-07!39;UBERON:0001890!2.26e-07!39;UBERON:0006240!2.26e-07!39;UBERON:0002204!3.26e-07!32;UBERON:0003056!7.39e-07!49 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,4.93e-11,75;UBERON:0004121,5.47e-11,95;UBERON:0000924,5.47e-11,95;UBERON:0006601,5.47e-11,95;UBERON:0001017,1.14e-10,73;UBERON:0000073,3.23e-10,54;UBERON:0002020,7.97e-10,34;UBERON:0001049,1.32e-09,52;UBERON:0005068,1.32e-09,52;UBERON:0006241,1.32e-09,52;UBERON:0007135,1.32e-09,52;UBERON:0002346,5.86e-09,64;UBERON:0003075,5.86e-09,64;UBERON:0007284,5.86e-09,64;UBERON:0000025,6.81e-09,114;UBERON:0004111,7.24e-09,122;UBERON:0003528,8.15e-09,29;UBERON:0002791,8.15e-09,29;UBERON:0001893,8.15e-09,29;UBERON:0010371,9.40e-09,73;UBERON:0000955,2.25e-08,47;UBERON:0006238,2.25e-08,47;UBERON:0002616,4.32e-08,46;UBERON:0003080,1.34e-07,40;UBERON:0002780,2.26e-07,39;UBERON:0001890,2.26e-07,39;UBERON:0006240,2.26e-07,39;UBERON:0002204,3.26e-07,32;UBERON:0003056,7.39e-07,49 | |||
|phase1_expression=29.4673878672821,2.44282785347553,5.0049916332849,6.35174843744343,6.01074875935617,4.53274034162102,3.27057696833736,7.618276083053,3.94208422024667,2.34064526321993,10.6155140299813,8.05698805852898,11.1280474455284,5.85716696207283,16.6554880907831,17.8178235303047,23.0855419782288,47.792518051773,50.7323404341233,54.3218754301479,29.7651515528744,72.1845215230436,68.69554454354,3.83981814704176,9.40578052375397,3.44539178469012,3.01533397311352,2.15471232685889,12.3515222646643,10.3332353201572,5.54326276638262,0.635030673459631,1.84519436275371,0,10.6875099307972,17.1221684719247,13.8835162258411,253.211636595829,268.779358516187,187.42150034262,304.115679312034,280.731694317921,298.103356761128,37.6431485746976,38.8273646570741,31.7535881239709,12.5182615095686,15.9158364157726,20.6505011770404,21.970578595394,14.4186014274123,8.62515386189829,38.4222167872216,13.7818806982155,10.7550015725588,20.0662360108039,17.7650732762029,30.4246534443691,44.7119378499711,37.0293685490423,38.0298842103708,12.1984031544888,12.450127145556,99.4389187595946,91.9645717187286,86.6785740234242,43.4420160251687,29.2005912044381,53.2964607265575,53.0573337643544,52.1605904151427,35.7063730504754,32.2468069789356,46.0565405048227,38.3381884072945,33.0918763179608,36.3382407297983,49.1596251627973,47.310812242923,45.1051104037263,44.6459700779759,45.3194632384381,51.6488548152555,45.5837714125661,41.5611233952923,34.7661730858928,33.4573449877892,44.3630681064215,46.1929779332423,23.7294698735307,53.045201432407,93.7862025909711,45.5580793584193,62.065867038349,66.2771945796623,52.8671726774856,31.7404389497759,0.170430322578058,0.519572009205738,0.70667914902068,36.0559154628302,0,0,0,14.7213907887626,12.6679932737549,15.6712577954583,35.7395543520658,31.3314839213078,37.8527454615303,15.9606500624845,12.4830846107978,19.3717017695089,15.0722640552623,20.8132011630198,32.2963139717266,94.9228676099996,16.4843266888699,27.4229271104461,23.7797269422691,25.6176161414057,21.819386391085,13.0474232852686,45.0882427397783,54.4561437714983,16.6047085885584,59.5481168794424,72.5882304502023,63.1539028553132,36.9982879329912,33.8550446085784,45.9894928733084,37.0245802009549,44.4944895754775,41.3498208673525,37.477731768652,37.4768858969164,34.709544800216,33.8648496301124,30.5140691035387,17.6963802429277,23.2201125477808,19.086585759367,20.1944455899858,27.4867456571365,24.3416068541215,31.10897255383,21.9897865128163,21.1256633074185,22.5036235399705,24.2812551346249,28.2762494831572,16.6828349535359,16.0195996600197,23.6649456869135,25.6754204195856,35.1106593656617,41.9477088596986,55.4118823821406,9.32065976409758,9.38104239924385,11.704033994966,10.6535131013345,12.5929108318338,14.3468414985262,15.8123082430277,15.2915838797783,21.2512923108248,18.7598228901368,21.3417703302824,29.3469090555998,27.9241975982385,26.5655639502171,37.3093844153833,32.1743621303115,43.3228418116787,18.8338706300765,5.81791246659797,15.5700422890721,18.1144604051142,11.9846739029547,10.2858597557905,10.4517680607089,16.1691782195675,9.49058123089023,16.6345944271251,19.1014758688205,17.110256595539,20.8611573217459,7.19055526923377,12.752144942607,15.3338780405863,20.4841333029328,17.1372768914593,20.2873924211545,18.5322708339236,21.3347735884388,29.3869085340435,33.5786012129806,30.1124701878388,35.4817124921507,36.0319718651658,64.0337674508242,11.3454671886944,8.45203678986773,11.0182435068578,16.4316698324687,20.5000585789554,24.1894559192349,31.0711828446875,31.940639674682,42.0078962177765,35.9420516318386,36.0976719238448,40.5648975048929,51.7786699791579,47.002122342741,53.0687873499704,32.3318082791558,18.759649765278,13.5260930446881,14.5980773766662,14.5507953938871,16.0806007144143,17.615229425565,21.4647012643579,24.4334473364596,20.5962161373361,34.4422300300172,31.7894830548532,31.6013516814589,35.1497212353073,102.538073078705,103.342079925555,43.7670202986942,37.2514607511389,43.3486592967038,52.3936239067148,14.4262751931474,32.5687496093641,29.9732808445444,24.9880796349849,24.7736907392719,27.720380562496,22.2798674082394,23.4953520554731,22.6693992937941,18.704374906324,22.1361155650053,38.237236654195,38.7496432618573,34.5447271114475,41.861948553869,39.757799636381,17.2568679841952,17.7229864393136,17.5347663039556,16.2200368590072,19.7852268230118,21.8278955040189,26.6181141963268,30.5368332761105,24.5983191085458,23.7027568451862,18.9753495434998,18.5643977846736,21.1072555567349,16.3855595568492,18.7570091484994,18.8616590827801,20.3941268688615,27.4687979107189,26.1632942757372,19.790221692449,15.0189893160775,15.0400770313312,12.5701186891328,18.1374878235628,22.1206264573391,21.1698366497827,17.9058516004705,16.2499490747611,10.4933101186746,54.7004640931004,23.7510524309015,30.9580301944834,29.2607353244144,18.271740329455,13.1226458612184,24.0217081866849,76.4902934972349,72.6348037559785,70.6201866140606,29.5947891584685,13.7606157207794,16.4688768372747,16.5248171457356,15.0543573130417,14.8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|phase1_expression=29.4673878672821,2.44282785347553,5.0049916332849,6.35174843744343,6.01074875935617,4.53274034162102,3.27057696833736,7.618276083053,3.94208422024667,2.34064526321993,10.6155140299813,8.05698805852898,11.1280474455284,5.85716696207283,16.6554880907831,17.8178235303047,23.0855419782288,47.792518051773,50.7323404341233,54.3218754301479,29.7651515528744,72.1845215230436,68.69554454354,3.83981814704176,9.40578052375397,3.44539178469012,3.01533397311352,2.15471232685889,12.3515222646643,10.3332353201572,5.54326276638262,0.635030673459631,1.84519436275371,0,10.6875099307972,17.1221684719247,13.8835162258411,253.211636595829,268.779358516187,187.42150034262,304.115679312034,280.731694317921,298.103356761128,37.6431485746976,38.8273646570741,31.7535881239709,12.5182615095686,15.9158364157726,20.6505011770404,21.970578595394,14.4186014274123,8.62515386189829,38.4222167872216,13.7818806982155,10.7550015725588,20.0662360108039,17.7650732762029,30.4246534443691,44.7119378499711,37.0293685490423,38.0298842103708,12.1984031544888,12.450127145556,99.4389187595946,91.9645717187286,86.6785740234242,43.4420160251687,29.2005912044381,53.2964607265575,53.0573337643544,52.1605904151427,35.7063730504754,32.2468069789356,46.0565405048227,38.3381884072945,33.0918763179608,36.3382407297983,49.1596251627973,47.310812242923,45.1051104037263,44.6459700779759,45.3194632384381,51.6488548152555,45.5837714125661,41.5611233952923,34.7661730858928,33.4573449877892,44.3630681064215,46.1929779332423,23.7294698735307,53.045201432407,93.7862025909711,45.5580793584193,62.065867038349,66.2771945796623,52.8671726774856,31.7404389497759,0.170430322578058,0.519572009205738,0.70667914902068,36.0559154628302,0,0,0,14.7213907887626,12.6679932737549,15.6712577954583,35.7395543520658,31.3314839213078,37.8527454615303,15.9606500624845,12.4830846107978,19.3717017695089,15.0722640552623,20.8132011630198,32.2963139717266,94.9228676099996,16.4843266888699,27.4229271104461,23.7797269422691,25.6176161414057,21.819386391085,13.0474232852686,45.0882427397783,54.4561437714983,16.6047085885584,59.5481168794424,72.5882304502023,63.1539028553132,36.9982879329912,33.8550446085784,45.9894928733084,37.0245802009549,44.4944895754775,41.3498208673525,37.477731768652,37.4768858969164,34.709544800216,33.8648496301124,30.5140691035387,17.6963802429277,23.2201125477808,19.086585759367,20.1944455899858,27.4867456571365,24.3416068541215,31.10897255383,21.9897865128163,21.1256633074185,22.5036235399705,24.2812551346249,28.2762494831572,16.6828349535359,16.0195996600197,23.6649456869135,25.6754204195856,35.1106593656617,41.9477088596986,55.4118823821406,9.32065976409758,9.38104239924385,11.704033994966,10.6535131013345,12.5929108318338,14.3468414985262,15.8123082430277,15.2915838797783,21.2512923108248,18.7598228901368,21.3417703302824,29.3469090555998,27.9241975982385,26.5655639502171,37.3093844153833,32.1743621303115,43.3228418116787,18.8338706300765,5.81791246659797,15.5700422890721,18.1144604051142,11.9846739029547,10.2858597557905,10.4517680607089,16.1691782195675,9.49058123089023,16.6345944271251,19.1014758688205,17.110256595539,20.8611573217459,7.19055526923377,12.752144942607,15.3338780405863,20.4841333029328,17.1372768914593,20.2873924211545,18.5322708339236,21.3347735884388,29.3869085340435,33.5786012129806,30.1124701878388,35.4817124921507,36.0319718651658,64.0337674508242,11.3454671886944,8.45203678986773,11.0182435068578,16.4316698324687,20.5000585789554,24.1894559192349,31.0711828446875,31.940639674682,42.0078962177765,35.9420516318386,36.0976719238448,40.5648975048929,51.7786699791579,47.002122342741,53.0687873499704,32.3318082791558,18.759649765278,13.5260930446881,14.5980773766662,14.5507953938871,16.0806007144143,17.615229425565,21.4647012643579,24.4334473364596,20.5962161373361,34.4422300300172,31.7894830548532,31.6013516814589,35.1497212353073,102.538073078705,103.342079925555,43.7670202986942,37.2514607511389,43.3486592967038,52.3936239067148,14.4262751931474,32.5687496093641,29.9732808445444,24.9880796349849,24.7736907392719,27.720380562496,22.2798674082394,23.4953520554731,22.6693992937941,18.704374906324,22.1361155650053,38.237236654195,38.7496432618573,34.5447271114475,41.861948553869,39.757799636381,17.2568679841952,17.7229864393136,17.5347663039556,16.2200368590072,19.7852268230118,21.8278955040189,26.6181141963268,30.5368332761105,24.5983191085458,23.7027568451862,18.9753495434998,18.5643977846736,21.1072555567349,16.3855595568492,18.7570091484994,18.8616590827801,20.3941268688615,27.4687979107189,26.1632942757372,19.790221692449,15.0189893160775,15.0400770313312,12.5701186891328,18.1374878235628,22.1206264573391,21.1698366497827,17.9058516004705,16.2499490747611,10.4933101186746,54.7004640931004,23.7510524309015,30.9580301944834,29.2607353244144,18.271740329455,13.1226458612184,24.0217081866849,76.4902934972349,72.6348037559785,70.6201866140606,29.5947891584685,13.7606157207794,16.4688768372747,16.5248171457356,15.0543573130417,14.8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| ||
|short_description=p1@Rnf130 | |short_description=p1@Rnf130 | ||
}} | }} |
Latest revision as of 14:40, 1 October 2015
Short description: | p1@Rnf130 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Rnf130_5end |
Coexpression cluster: | MCL_coexpression_mm9:3 |
Association with transcript: | 0bp_to_ENSMUST00000054684, ENSMUST00000102776, NM_021540, uc007irk.1, uc007irl.1, uc007irm.1, uc007irn.1_5end |
EntrezGene: | Rnf130 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 6.19e-09 | 23 |
neuroblast (sensu Vertebrata) | 6.19e-09 | 23 |
electrically responsive cell | 1.07e-07 | 39 |
electrically active cell | 1.07e-07 | 39 |
neuron | 1.39e-07 | 33 |
neuronal stem cell | 1.39e-07 | 33 |
neuroblast | 1.39e-07 | 33 |
electrically signaling cell | 1.39e-07 | 33 |
somatic stem cell | 5.70e-07 | 91 |
multi fate stem cell | 5.70e-07 | 91 |
Ontology term | p-value | n |
---|---|---|
nervous system | 4.93e-11 | 75 |
ectoderm-derived structure | 5.47e-11 | 95 |
ectoderm | 5.47e-11 | 95 |
presumptive ectoderm | 5.47e-11 | 95 |
central nervous system | 1.14e-10 | 73 |
regional part of nervous system | 3.23e-10 | 54 |
gray matter | 7.97e-10 | 34 |
neural tube | 1.32e-09 | 52 |
neural rod | 1.32e-09 | 52 |
future spinal cord | 1.32e-09 | 52 |
neural keel | 1.32e-09 | 52 |
neurectoderm | 5.86e-09 | 64 |
neural plate | 5.86e-09 | 64 |
presumptive neural plate | 5.86e-09 | 64 |
tube | 6.81e-09 | 114 |
anatomical conduit | 7.24e-09 | 122 |
brain grey matter | 8.15e-09 | 29 |
regional part of telencephalon | 8.15e-09 | 29 |
telencephalon | 8.15e-09 | 29 |
ecto-epithelium | 9.40e-09 | 73 |
brain | 2.25e-08 | 47 |
future brain | 2.25e-08 | 47 |
regional part of brain | 4.32e-08 | 46 |
anterior neural tube | 1.34e-07 | 40 |
regional part of forebrain | 2.26e-07 | 39 |
forebrain | 2.26e-07 | 39 |
future forebrain | 2.26e-07 | 39 |
musculoskeletal system | 3.26e-07 | 32 |
pre-chordal neural plate | 7.39e-07 | 49 |