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{{CL
{{CL
|id=CL:0000515
|alt_id=
|name=skeletal muscle myoblast
|namespace=cell
|def="A myoblast that differentiates into skeletal muscle fibers." [SANBI:mhl]
|xref=FMA:84799
|is_a=CL:0000056
|synonym="skeletal myoblast" EXACT []
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A myoblast that differentiates into skeletal muscle fibers." [SANBI:mhl]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=CL:0000355
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0000515
|is_a=CL:0000056 ;;CL_0000056
|is_obsolete=
|located_in=
|located_in=
|name=skeletal muscle myoblast
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0001134
|part_of=UBERON:0001134
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|subset=
|synonym="skeletal myoblast" EXACT []
|union_of=
|xref=FMA:84799
}}
}}

Latest revision as of 16:34, 12 September 2014

Name:skeletal muscle myoblast
Namespace:FANTOM
Definition:"A myoblast that differentiates into skeletal muscle fibers." [SANBI:mhl]
Xrefs:
links:
FMA:84799
Synonyms: "skeletal myoblast" EXACT []


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000056(myoblast),CL_0000056()
develops_from:CL:0000355(multi-potent skeletal muscle stem cell)
part_of:UBERON:0001134(skeletal muscle tissue)



Children


derives from:FF:0000164 (human skeletal muscle myoblast sample)
develops from:CL:0002372 (myotube)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000515 (skeletal muscle myoblast), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.57e-195FFCP PHASE1:Hg19::chr7:7595050..7595057,-#_77522ba1d1d53c798f9edc2f2a973a07p@chr7:7595050..7595057, -
2.57e-195FFCP PHASE2:Hg19::chr7:7595050..7595057,-#_77522ba1d1d53c798f9edc2f2a973a07p@chr7:7595050..7595057, -
6.94e-147FFCP PHASE1:Hg19::chr18:41106373..41106378,-#_37e28d62df81e8279002975fc4ca7778p@chr18:41106373..41106378, -
6.94e-147FFCP PHASE2:Hg19::chr18:41106373..41106378,-#_37e28d62df81e8279002975fc4ca7778p@chr18:41106373..41106378, -
1.55e-98FFCP PHASE2:Hg19::chr1:159438711..159438719,-#_f0d0b4656ee4ea369756fdd024719026p1@ENST00000431862, p1@uc001fts.3
1.55e-98FFCP PHASE1:Hg19::chr1:159438711..159438719,-#_f0d0b4656ee4ea369756fdd024719026p1@ENST00000431862, p1@uc001fts.3
2.4e-66FFCP PHASE1:Hg19::chr2:194726831..194726836,+#_b667bf6f4685eab8633a1ea478fb233ap@chr2:194726831..194726836, +
2.4e-66FFCP PHASE2:Hg19::chr2:194726831..194726836,+#_b667bf6f4685eab8633a1ea478fb233ap@chr2:194726831..194726836, +
3.35e-66FFCP PHASE1:Hg19::chr9:113430935..113430942,+#_683aea88c66ca2d9d668cf5be4e7a32ap5@MUSK
3.35e-66FFCP PHASE2:Hg19::chr9:113430935..113430942,+#_683aea88c66ca2d9d668cf5be4e7a32ap5@MUSK
4.67e-66FFCP PHASE1:Hg19::chr6:117747000..117747010,-#_dc1c8b59778436b66986829583cbe692p9@ROS1
4.67e-66FFCP PHASE2:Hg19::chr6:117747000..117747010,-#_dc1c8b59778436b66986829583cbe692p9@ROS1
2.78e-63FFCP PHASE1:Hg19::chr7:98258032..98258045,+#_275774418f969a58f44582a3da42f94ap@chr7:98258032..98258045, +
2.78e-63FFCP PHASE2:Hg19::chr7:98258032..98258045,+#_275774418f969a58f44582a3da42f94ap@chr7:98258032..98258045, +
2.15e-56FFCP PHASE1:Hg19::chr7:45952098..45952107,-#_23a3e907c0e1cc9b7fbf8f1354339a5ap@chr7:45952098..45952107, -
2.15e-56FFCP PHASE2:Hg19::chr7:45952098..45952107,-#_23a3e907c0e1cc9b7fbf8f1354339a5ap@chr7:45952098..45952107, -
2.6e-56FFCP PHASE2:Hg19::chr10:117419477..117419497,+#_b3623ad9344958f9cacd8bddf422a0eep@chr10:117419477..117419497, +
2.6e-56FFCP PHASE1:Hg19::chr10:117419477..117419497,+#_b3623ad9344958f9cacd8bddf422a0eep@chr10:117419477..117419497, +
8.06e-56FFCP PHASE1:Hg19::chr2:45419385..45419401,-#_7efb53f99dd7729926016046a1222641p1@ENST00000427020
8.06e-56FFCP PHASE2:Hg19::chr2:45419385..45419401,-#_7efb53f99dd7729926016046a1222641p1@ENST00000427020
3.1e-50FFCP PHASE2:Hg19::chr1:66943898..66943900,-#_23289a7b8be86f7ebf11b1ce70960b57p@chr1:66943898..66943900, -
3.1e-50FFCP PHASE2:Hg19::chr1:159438816..159438827,-#_23289a7b8be86f7ebf11b1ce70960b57p2@ENST00000431862, p2@uc001fts.3
3.1e-50FFCP PHASE1:Hg19::chr1:66943898..66943900,-#_23289a7b8be86f7ebf11b1ce70960b57p@chr1:66943898..66943900, -
3.1e-50FFCP PHASE1:Hg19::chr1:159438816..159438827,-#_23289a7b8be86f7ebf11b1ce70960b57p2@ENST00000431862, p2@uc001fts.3
3.1e-50FFCP PHASE1:Hg19::chr4:70601184..70601197,-#_23289a7b8be86f7ebf11b1ce70960b57p@chr4:70601184..70601197, -
3.1e-50FFCP PHASE2:Hg19::chr4:70601184..70601197,-#_23289a7b8be86f7ebf11b1ce70960b57p@chr4:70601184..70601197, -
3.1e-50FFCP PHASE1:Hg19::chr3:62153463..62153468,+#_23289a7b8be86f7ebf11b1ce70960b57p@chr3:62153463..62153468, +
3.1e-50FFCP PHASE2:Hg19::chr1:159316223..159316263,-#_23289a7b8be86f7ebf11b1ce70960b57p@chr1:159316223..159316263, -
3.1e-50FFCP PHASE1:Hg19::chr5:14400015..14400018,-#_23289a7b8be86f7ebf11b1ce70960b57p@chr5:14400015..14400018, -
3.1e-50FFCP PHASE2:Hg19::chr5:14400015..14400018,-#_23289a7b8be86f7ebf11b1ce70960b57p@chr5:14400015..14400018, -
3.1e-50FFCP PHASE2:Hg19::chr3:62153463..62153468,+#_23289a7b8be86f7ebf11b1ce70960b57p@chr3:62153463..62153468, +
3.1e-50FFCP PHASE1:Hg19::chr1:159316223..159316263,-#_23289a7b8be86f7ebf11b1ce70960b57p@chr1:159316223..159316263, -
4.37e-50FFCP PHASE2:Hg19::chr11:19619645..19619656,+#_fbcd786dfd52c7405c7c47903da0d3a5p@chr11:19619645..19619656, +
4.37e-50FFCP PHASE1:Hg19::chr11:19619645..19619656,+#_fbcd786dfd52c7405c7c47903da0d3a5p@chr11:19619645..19619656, +
5.14e-50FFCP PHASE2:Hg19::chr7:7594984..7594990,-#_06f49e218b31bc381bc26dd8502156e7p@chr7:7594984..7594990, -
5.14e-50FFCP PHASE2:Hg19::chr11:47470490..47470498,-#_06f49e218b31bc381bc26dd8502156e7p1@AB527888
5.14e-50FFCP PHASE2:Hg19::chr3:62153512..62153526,+#_06f49e218b31bc381bc26dd8502156e7p@chr3:62153512..62153526, +
5.14e-50FFCP PHASE1:Hg19::chr4:28460761..28460765,+#_06f49e218b31bc381bc26dd8502156e7p@chr4:28460761..28460765, +
5.14e-50FFCP PHASE2:Hg19::chr4:28460761..28460765,+#_06f49e218b31bc381bc26dd8502156e7p@chr4:28460761..28460765, +
5.14e-50FFCP PHASE1:Hg19::chr11:47470490..47470498,-#_06f49e218b31bc381bc26dd8502156e7p1@AB527888
5.14e-50FFCP PHASE2:Hg19::chr1:78475650..78475661,+#_06f49e218b31bc381bc26dd8502156e7p@chr1:78475650..78475661, +
5.14e-50FFCP PHASE1:Hg19::chr1:78475650..78475661,+#_06f49e218b31bc381bc26dd8502156e7p@chr1:78475650..78475661, +
5.14e-50FFCP PHASE1:Hg19::chr3:62153512..62153526,+#_06f49e218b31bc381bc26dd8502156e7p@chr3:62153512..62153526, +
5.14e-50FFCP PHASE1:Hg19::chr7:7594984..7594990,-#_06f49e218b31bc381bc26dd8502156e7p@chr7:7594984..7594990, -
5.16e-50FFCP PHASE2:Hg19::chr4:177190139..177190150,-#_f827cd0eb6e1938699c48609dddc59a5p6@ASB5
5.16e-50FFCP PHASE1:Hg19::chr5:172901990..172901996,+#_f827cd0eb6e1938699c48609dddc59a5p@chr5:172901990..172901996, +
5.16e-50FFCP PHASE2:Hg19::chr5:172901990..172901996,+#_f827cd0eb6e1938699c48609dddc59a5p@chr5:172901990..172901996, +
5.16e-50FFCP PHASE1:Hg19::chr4:177190139..177190150,-#_f827cd0eb6e1938699c48609dddc59a5p6@ASB5
5.96e-45FFCP PHASE2:Hg19::chr11:47470591..47470604,-#_f71a4ae29cf65b896842ed7a3877967fp4@RAPSN
5.96e-45FFCP PHASE1:Hg19::chr11:47470591..47470604,-#_f71a4ae29cf65b896842ed7a3877967fp4@RAPSN
6.58e-45FFCP PHASE1:Hg19::chr8:122653259..122653278,+#_f435eb5f4aef5248e2c9273d6e57c6d4p4@HAS2-AS1
6.58e-45FFCP PHASE2:Hg19::chr8:122653259..122653278,+#_f435eb5f4aef5248e2c9273d6e57c6d4p4@HAS2-AS1
2.28e-42FFCP PHASE1:Hg19::chr11:47470657..47470674,-#_63848e8d2fe39d7da898fcde0144d80ep2@RAPSN
2.28e-42FFCP PHASE2:Hg19::chr11:47470657..47470674,-#_63848e8d2fe39d7da898fcde0144d80ep2@RAPSN
5.02e-41FFCP PHASE1:Hg19::chr5:32829061..32829092,+#_831014c8cc1512125fcd4c11a0d11cb6p@chr5:32829061..32829092, +
5.02e-41FFCP PHASE2:Hg19::chr5:32829061..32829092,+#_831014c8cc1512125fcd4c11a0d11cb6p@chr5:32829061..32829092, +
1.58e-40FFCP PHASE1:Hg19::chr11:17741254..17741282,+#_2b2809a8bcac62f5fe55bc1b470ee777p2@MYOD1
1.58e-40FFCP PHASE2:Hg19::chr11:17741254..17741282,+#_2b2809a8bcac62f5fe55bc1b470ee777p2@MYOD1
1.81e-40FFCP PHASE2:Hg19::chr11:19371449..19371460,+#_ed0d46de3793cc80ff92debc1d2fefffp@chr11:19371449..19371460, +
1.81e-40FFCP PHASE1:Hg19::chr11:19371449..19371460,+#_ed0d46de3793cc80ff92debc1d2fefffp@chr11:19371449..19371460, +
4.05e-40FFCP PHASE1:Hg19::chr4:28866276..28866280,+#_09ec3646f5f45a22792b3817d063db02p@chr4:28866276..28866280, +
4.05e-40FFCP PHASE2:Hg19::chr4:28866276..28866280,+#_09ec3646f5f45a22792b3817d063db02p@chr4:28866276..28866280, +
2.36e-37FFCP PHASE2:Hg19::chr16:31076273..31076288,-#_c12541fe5add91bb1d774cdc88b8253cp11@ZNF668
2.36e-37FFCP PHASE1:Hg19::chr16:31076273..31076288,-#_c12541fe5add91bb1d774cdc88b8253cp11@ZNF668
2.36e-35FFCP PHASE2:Hg19::chr1:59361566..59361570,-#_8126b9f9b2537474e794f34a7ef25f83p@chr1:59361566..59361570, -
2.36e-35FFCP PHASE1:Hg19::chr1:59361566..59361570,-#_8126b9f9b2537474e794f34a7ef25f83p@chr1:59361566..59361570, -
6.0e-35FFCP PHASE2:Hg19::chr12:56075553..56075558,+#_dd744594b3688d2ff5ed25f30efea0edp5@METTL7B
6.0e-35FFCP PHASE1:Hg19::chr12:56075553..56075558,+#_dd744594b3688d2ff5ed25f30efea0edp5@METTL7B
8.13e-35FFCP PHASE2:Hg19::chr11:47470703..47470715,-#_79c1f18d8bb2259a1f9f82808c27cc04p3@RAPSN
8.13e-35FFCP PHASE1:Hg19::chr11:47470703..47470715,-#_79c1f18d8bb2259a1f9f82808c27cc04p3@RAPSN
5.98e-34FFCP PHASE2:Hg19::chr16:56651531..56651554,+#_719e8b75f49ca9ae798c9ef4363ec957p@chr16:56651531..56651554, +
5.98e-34FFCP PHASE1:Hg19::chr16:56651531..56651554,+#_719e8b75f49ca9ae798c9ef4363ec957p@chr16:56651531..56651554, +
8.36e-34FFCP PHASE2:Hg19::chr1:78475606..78475614,+#_09d8c30b56592f11b5ea14a5a895bcdep@chr1:78475606..78475614, +
8.36e-34FFCP PHASE1:Hg19::chr1:78475606..78475614,+#_09d8c30b56592f11b5ea14a5a895bcdep@chr1:78475606..78475614, +
8.36e-34FFCP PHASE1:Hg19::chr6:117747099..117747109,-#_09d8c30b56592f11b5ea14a5a895bcdep7@ROS1
8.36e-34FFCP PHASE2:Hg19::chr6:117747099..117747109,-#_09d8c30b56592f11b5ea14a5a895bcdep7@ROS1
1.15e-33FFCP PHASE2:Hg19::chr16:89238212..89238224,+#_4c9468e2f2dc8bce1b1c64b3ee6bcd3ap2@CDH15
1.15e-33FFCP PHASE1:Hg19::chr16:89238212..89238224,+#_4c9468e2f2dc8bce1b1c64b3ee6bcd3ap2@CDH15
1.17e-33FFCP PHASE1:Hg19::chr3:30449903..30449909,+#_158e0c1009313965c7bc1c434a9411edp@chr3:30449903..30449909, +
1.17e-33FFCP PHASE2:Hg19::chr3:30449903..30449909,+#_158e0c1009313965c7bc1c434a9411edp@chr3:30449903..30449909, +
1.18e-32FFCP PHASE2:Hg19::chr1:242927602..242927613,-#_ecb05f9d8adf7ea6c639fe5f9d128f73p@chr1:242927602..242927613, -
1.18e-32FFCP PHASE1:Hg19::chr1:242927602..242927613,-#_ecb05f9d8adf7ea6c639fe5f9d128f73p@chr1:242927602..242927613, -
6.56e-32FFCP PHASE1:Hg19::chr16:89238188..89238199,+#_15f2a408537fd54629aff089f0bf89f8p3@CDH15
6.56e-32FFCP PHASE2:Hg19::chr16:89238188..89238199,+#_15f2a408537fd54629aff089f0bf89f8p3@CDH15
9.47e-31FFCP PHASE1:Hg19::chr6:94497816..94497824,+#_414b7212bd4eb20300721229c3c57190p@chr6:94497816..94497824, +
9.47e-31FFCP PHASE2:Hg19::chr6:94497816..94497824,+#_414b7212bd4eb20300721229c3c57190p@chr6:94497816..94497824, +
2.62e-30FFCP PHASE1:Hg19::chr11:17741084..17741094,+#_e2c706cf00ac3bfc95168ae81135a8d0p3@MYOD1
2.62e-30FFCP PHASE2:Hg19::chr11:17741084..17741094,+#_e2c706cf00ac3bfc95168ae81135a8d0p3@MYOD1
3.87e-30FFCP PHASE2:Hg19::chr11:65783268..65783279,+#_d8dbfd37d7ce3aac417a2e94b8986aa1p@chr11:65783268..65783279, +
3.87e-30FFCP PHASE1:Hg19::chr11:65783268..65783279,+#_d8dbfd37d7ce3aac417a2e94b8986aa1p@chr11:65783268..65783279, +
4.21e-29FFCP PHASE1:Hg19::chr3:156210737..156210741,-#_6650874e0a91f4eca3d68520227a6dfdp@chr3:156210737..156210741, -
4.21e-29FFCP PHASE2:Hg19::chr3:156210737..156210741,-#_6650874e0a91f4eca3d68520227a6dfdp@chr3:156210737..156210741, -
4.86e-29FFCP PHASE2:Hg19::chr12:81028467..81028477,+#_14984194345665c54c0ae03207d67998p5@PTPRQ
4.86e-29FFCP PHASE1:Hg19::chr13:66999851..66999857,-#_14984194345665c54c0ae03207d67998p@chr13:66999851..66999857, -
4.86e-29FFCP PHASE2:Hg19::chr13:66999851..66999857,-#_14984194345665c54c0ae03207d67998p@chr13:66999851..66999857, -
4.86e-29FFCP PHASE1:Hg19::chr12:81028467..81028477,+#_14984194345665c54c0ae03207d67998p5@PTPRQ
5.61e-29FFCP PHASE2:Hg19::chr15:40675222..40675233,+#_aa874177daf8d61e3fa67b2350b4451ap4@C15orf23
5.61e-29FFCP PHASE1:Hg19::chr15:40675222..40675233,+#_aa874177daf8d61e3fa67b2350b4451ap4@C15orf23
1.28e-27FFCP PHASE2:Hg19::chr11:17741111..17741124,+#_d754cdd4e65374ffc4d092ceefb603d9p1@MYOD1
1.28e-27FFCP PHASE1:Hg19::chr11:17741111..17741124,+#_d754cdd4e65374ffc4d092ceefb603d9p1@MYOD1

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