FFCP PHASE1:Hg19::chr13:111115632..111115634,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=100129836 | |EntrezGene=100129836 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=39849 | |HGNC=39849 | ||
|TSSclassifier=strong | |||
|UniProt=Q6ZP31 | |UniProt=Q6ZP31 | ||
|association_with_transcript=0bp_to_AK130129_5end | |association_with_transcript=0bp_to_AK130129_5end | ||
|cluster_id=chr13:111115632..111115634,- | |||
|coexpression_cluster_id=C71 | |||
|description=CAGE_peak_1_at_COL4A2-AS2_5end | |description=CAGE_peak_1_at_COL4A2-AS2_5end | ||
|id=chr13:111115632..111115634,- | |id=chr13:111115632..111115634,- | ||
|ontology_enrichment_celltype=CL:0002194!1.68e-56!63;CL:0000576!1.68e-56!63;CL:0000040!1.68e-56!63;CL:0000559!1.68e-56!63;CL:0002009!1.36e-54!65;CL:0000839!2.76e-50!70;CL:0000557!1.70e-49!71;CL:0000766!7.43e-46!76;CL:0000860!1.39e-41!45;CL:0002057!1.05e-40!42;CL:0002087!2.57e-29!119;CL:0000763!3.77e-29!112;CL:0000049!3.77e-29!112;CL:0002031!7.13e-28!124;CL:0000738!6.05e-24!140;CL:0000235!5.03e-23!10;CL:0002032!2.53e-19!165;CL:0000837!2.53e-19!165;CL:0000037!2.86e-18!172;CL:0000566!2.86e-18!172;CL:0000988!6.64e-17!182;CL:0000134!2.18e-07!358;CL:0002320!4.12e-07!365 | |ontology_enrichment_celltype=CL:0002194!1.68e-56!63;CL:0000576!1.68e-56!63;CL:0000040!1.68e-56!63;CL:0000559!1.68e-56!63;CL:0002009!1.36e-54!65;CL:0000839!2.76e-50!70;CL:0000557!1.70e-49!71;CL:0000766!7.43e-46!76;CL:0000860!1.39e-41!45;CL:0002057!1.05e-40!42;CL:0002087!2.57e-29!119;CL:0000763!3.77e-29!112;CL:0000049!3.77e-29!112;CL:0002031!7.13e-28!124;CL:0000738!6.05e-24!140;CL:0000235!5.03e-23!10;CL:0002032!2.53e-19!165;CL:0000837!2.53e-19!165;CL:0000037!2.86e-18!172;CL:0000566!2.86e-18!172;CL:0000988!6.64e-17!182;CL:0000134!2.18e-07!358;CL:0002320!4.12e-07!365 | ||
|ontology_enrichment_celltype_v019=CL:0000235;1.03e-74;6!CL:0000473;6.85e-31;39!CL:0000234;6.85e-31;39!CL:0000766;2.26e-11;69!CL:0000860;3.65e-09;33!CL:0002057;3.65e-09;33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000235,1.51e-74,6;CL:0000473,8.58e-30,48;CL:0000234,8.58e-30,48;CL:0002194,2.07e-29,59;CL:0000576,2.07e-29,59;CL:0000040,2.07e-29,59;CL:0000559,2.07e-29,59;CL:0002009,1.90e-28,61;CL:0000839,2.73e-26,66;CL:0000557,6.77e-26,67;CL:0000766,4.34e-24,72;CL:0002087,3.68e-18,115;CL:0002031,2.20e-17,120;CL:0000763,5.97e-16,108;CL:0000049,5.97e-16,108;CL:0000738,2.78e-15,136;CL:0002032,8.04e-13,161;CL:0000837,8.04e-13,161;CL:0000037,2.92e-12,168;CL:0000988,1.32e-11,177;CL:0000860,3.25e-07,42;CL:0002057,3.25e-07,42 | |||
|ontology_enrichment_development_v019=CL:0000049;2.85e-07;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!2.88e-43!80;UBERON:0002390!1.81e-40!102;UBERON:0003061!1.81e-40!102;UBERON:0001474!7.90e-40!86;UBERON:0002193!2.89e-36!112;UBERON:0002405!3.80e-35!115;UBERON:0004765!5.28e-33!101;UBERON:0001434!5.28e-33!101;UBERON:0002204!1.68e-20!167;UBERON:0003081!3.88e-18!216;UBERON:0002384!1.97e-07!375 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,8.22e-23,76;UBERON:0001474,4.00e-21,82;UBERON:0004765,3.21e-19,90;UBERON:0002405,1.37e-18,93;UBERON:0002390,1.27e-17,98;UBERON:0003061,1.27e-17,98;UBERON:0001434,2.92e-17,100;UBERON:0002193,5.97e-16,108;UBERON:0002204,4.09e-10,167;UBERON:0003081,3.40e-08,203 | |||
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|short_description=p1@COL4A2-AS2 | |short_description=p1@COL4A2-AS2 | ||
}} | }} |
Latest revision as of 12:55, 16 September 2015
Short description: | p1@COL4A2-AS2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_COL4A2-AS2_5end |
Coexpression cluster: | C71_Monocytederived_Macrophage_CD14_Dendritic_Osteoblast_leiomyoma_Prostate |
Association with transcript: | 0bp_to_AK130129_5end |
EntrezGene: | COL4A2-AS2 |
HGNC: | 39849 |
UniProt: | Q6ZP31 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
macrophage | 1.51e-74 | 6 |
defensive cell | 8.58e-30 | 48 |
phagocyte | 8.58e-30 | 48 |
monopoietic cell | 2.07e-29 | 59 |
monocyte | 2.07e-29 | 59 |
monoblast | 2.07e-29 | 59 |
promonocyte | 2.07e-29 | 59 |
macrophage dendritic cell progenitor | 1.90e-28 | 61 |
myeloid lineage restricted progenitor cell | 2.73e-26 | 66 |
granulocyte monocyte progenitor cell | 6.77e-26 | 67 |
myeloid leukocyte | 4.34e-24 | 72 |
nongranular leukocyte | 3.68e-18 | 115 |
hematopoietic lineage restricted progenitor cell | 2.20e-17 | 120 |
myeloid cell | 5.97e-16 | 108 |
common myeloid progenitor | 5.97e-16 | 108 |
leukocyte | 2.78e-15 | 136 |
hematopoietic oligopotent progenitor cell | 8.04e-13 | 161 |
hematopoietic multipotent progenitor cell | 8.04e-13 | 161 |
hematopoietic stem cell | 2.92e-12 | 168 |
hematopoietic cell | 1.32e-11 | 177 |
classical monocyte | 3.25e-07 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.25e-07 | 42 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 8.22e-23 | 76 |
bone element | 4.00e-21 | 82 |
skeletal element | 3.21e-19 | 90 |
immune system | 1.37e-18 | 93 |
hematopoietic system | 1.27e-17 | 98 |
blood island | 1.27e-17 | 98 |
skeletal system | 2.92e-17 | 100 |
hemolymphoid system | 5.97e-16 | 108 |
musculoskeletal system | 4.09e-10 | 167 |
lateral plate mesoderm | 3.40e-08 | 203 |