FFCP PHASE1:Mm9::chr1:39424745..39424776,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=100042740,100505081,114641,638399,665533,665562,667682 | |EntrezGene=100042740,100505081,114641,638399,665533,665562,667682 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=81 | |||
|TSSclassifier=NA | |||
|UniProt=P62900,Q5M9K9,D3YWP7 | |UniProt=P62900,Q5M9K9,D3YWP7 | ||
|association_with_transcript=49bp_to_ENSMUST00000086535,NM_001252218,NM_001252219,NM_053257,uc007ate.2,uc007atf.2_5end | |association_with_transcript=49bp_to_ENSMUST00000086535,NM_001252218,NM_001252219,NM_053257,uc007ate.2,uc007atf.2_5end | ||
|cluster_id=chr1:39424745..39424776,+ | |||
|description=CAGE_peak_1_at_Gm10191_5end,CAGE_peak_1_at_Gm13004_5end,CAGE_peak_1_at_Gm7689_5end,CAGE_peak_1_at_Gm8759_5end,CAGE_peak_1_at_LOC100505081_5end,CAGE_peak_1_at_LOC638399_5end,CAGE_peak_1_at_Rpl31_5end | |description=CAGE_peak_1_at_Gm10191_5end,CAGE_peak_1_at_Gm13004_5end,CAGE_peak_1_at_Gm7689_5end,CAGE_peak_1_at_Gm8759_5end,CAGE_peak_1_at_LOC100505081_5end,CAGE_peak_1_at_LOC638399_5end,CAGE_peak_1_at_Rpl31_5end | ||
|id=chr1:39424745..39424776,+ | |id=chr1:39424745..39424776,+ | ||
|ontology_enrichment_celltype=CL:0000034!2.44e-16!97;CL:0000723!1.19e-14!91;CL:0000048!1.19e-14!91;CL:0000144!1.91e-14!121;CL:0000012!1.91e-14!121;CL:0002320!3.44e-14!46;CL:0000134!3.44e-14!46;CL:0000063!3.47e-14!66;CL:0000988!1.00e-13!32;CL:0002032!1.00e-13!32;CL:0000037!1.00e-13!32;CL:0000566!1.00e-13!32;CL:0000837!1.00e-13!32;CL:0000548!2.52e-13!115;CL:0000004!2.52e-13!115;CL:0000255!2.52e-13!115;CL:0002371!4.45e-13!118;CL:0000219!8.78e-12!54;CL:0002031!6.44e-10!25;CL:0000542!3.23e-09!13;CL:0000051!3.23e-09!13;CL:0000838!6.99e-09!12;CL:0000084!2.98e-08!11;CL:0000827!2.98e-08!11;CL:0000738!1.34e-07!17;CL:0002087!1.34e-07!17;CL:0000791!1.89e-07!9;CL:0000789!1.89e-07!9;CL:0002420!1.89e-07!9;CL:0002419!1.89e-07!9;CL:0000790!1.89e-07!9;CL:0000624!8.76e-07!8 | |ontology_enrichment_celltype=CL:0000034!2.44e-16!97;CL:0000723!1.19e-14!91;CL:0000048!1.19e-14!91;CL:0000144!1.91e-14!121;CL:0000012!1.91e-14!121;CL:0002320!3.44e-14!46;CL:0000134!3.44e-14!46;CL:0000063!3.47e-14!66;CL:0000988!1.00e-13!32;CL:0002032!1.00e-13!32;CL:0000037!1.00e-13!32;CL:0000566!1.00e-13!32;CL:0000837!1.00e-13!32;CL:0000548!2.52e-13!115;CL:0000004!2.52e-13!115;CL:0000255!2.52e-13!115;CL:0002371!4.45e-13!118;CL:0000219!8.78e-12!54;CL:0002031!6.44e-10!25;CL:0000542!3.23e-09!13;CL:0000051!3.23e-09!13;CL:0000838!6.99e-09!12;CL:0000084!2.98e-08!11;CL:0000827!2.98e-08!11;CL:0000738!1.34e-07!17;CL:0002087!1.34e-07!17;CL:0000791!1.89e-07!9;CL:0000789!1.89e-07!9;CL:0002420!1.89e-07!9;CL:0002419!1.89e-07!9;CL:0000790!1.89e-07!9;CL:0000624!8.76e-07!8 | ||
|ontology_enrichment_celltype_v019_2=CL:0000034,2.44e-16,97;CL:0000723,1.19e-14,91;CL:0000048,1.19e-14,91;CL:0002320,3.44e-14,46;CL:0000134,3.44e-14,46;CL:0000988,1.00e-13,32;CL:0002032,1.00e-13,32;CL:0000037,1.00e-13,32;CL:0000837,1.00e-13,32;CL:0000219,8.78e-12,54;CL:0002031,6.44e-10,25;CL:0000542,3.23e-09,13;CL:0000051,3.23e-09,13;CL:0000838,6.99e-09,12;CL:0000084,2.98e-08,11;CL:0000827,2.98e-08,11;CL:0000738,1.34e-07,17;CL:0002087,1.34e-07,17;CL:0000791,1.89e-07,9;CL:0000789,1.89e-07,9;CL:0002420,1.89e-07,9;CL:0002419,1.89e-07,9;CL:0000790,1.89e-07,9;CL:0000624,8.76e-07,8 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002384!3.44e-14!46;UBERON:0002390!1.32e-08!45;UBERON:0003061!1.32e-08!45;UBERON:0002193!1.59e-08!48 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,3.44e-14,46;UBERON:0002390,1.32e-08,45;UBERON:0003061,1.32e-08,45;UBERON:0002193,1.59e-08,48;UBERON:0002405,1.59e-08,48 | |||
|phase1_expression=17.2960754873177,6.63053274514786,4.54999239389536,6.65421264875026,7.51343594919521,10.7442734023609,12.3814699515629,29.6983643915625,79.9679941821467,73.7303257914279,56.8443654508677,45.1510419913604,36.636956205278,34.705899760342,16.6554880907831,27.1316858302367,19.5877325875881,28.7070570475996,28.7940310572051,27.585327366872,5.44277056966847,15.588679338539,22.7243816550874,14.7193028969934,15.5998311125676,8.03924749761028,11.1998119001359,8.40337807474967,10.0712412311878,12.8535366177565,16.6297882991479,18.4158895303293,15.9916844771988,0,30.3294200738838,29.5897668738116,26.9503550266327,8.37063261473815,10.1573594788094,11.5175223674236,11.1763982725893,12.9778642142105,15.0508209439658,10.9530231638752,11.3542162965856,15.2343804294196,9.38869613217647,9.3750817243592,7.24964403023757,5.05517737593137,11.6188729949051,7.18762821824858,32.8853907873163,33.3666585325218,39.3229744996683,13.8920095459411,7.44986943840768,8.25075347643908,11.7343547298567,8.46385566835253,13.9442908771359,12.876092218627,9.78224275722253,10.7987966073768,19.7773272513395,12.7886420690298,6.89080254192331,5.76327457982332,9.95420278161385,13.095576018174,12.4091727197315,17.1390590642282,17.0068776532742,11.5141351262057,10.7346927540425,13.7882817991503,13.2139057199266,9.83192503255945,8.29475279583715,11.7378796079873,12.0763689555181,13.5437476344758,13.4007839520663,14.6318278608237,10.2374826010463,9.72274332063103,11.5321061447273,11.183966749518,16.6597625333005,13.1494514585807,21.7398366526258,15.487629785665,11.5595126730318,7.55584468292944,9.09686984426737,3.13618820968135,6.46044332606059,21.8150812899914,38.4483286812246,37.8073344726064,18.3096445709685,20.5322363862909,15.2883143823987,7.11066703153331,27.277871167413,26.6027858748854,26.7927955857835,6.62266502370548,5.69663344023778,6.67989625791711,9.88866362566974,11.2652226975492,8.76338889573022,12.0578112442098,9.28950786372068,5.6549966098354,5.19109432242185,3.90418263683761,10.6153266233985,7.92657564742305,6.62524555381181,12.6067565815158,14.9113408974498,6.14839673724249,5.65506108396329,5.8755122697976,27.078218138338,44.9927048245056,24.5245538251015,7.33974133083631,15.5550204958333,9.92669381691629,6.95297280769106,9.71718737855256,8.93488591606108,8.76102820565891,9.26738211037878,9.57933673697716,7.32895999457657,6.94458124425364,12.4915625244196,12.1848115349741,10.803727788321,14.0155480587215,7.96027040070536,8.45550553880009,8.33945348581587,6.46758426847539,10.993967639575,10.9681526497335,11.4368230706567,12.4941567483718,10.5657954705727,12.1888258282758,13.3758388665163,14.3304672109315,31.5995934290956,27.5362260612745,18.1864639613179,8.90640821902658,10.0846205791871,10.8037236876609,6.15536312521547,8.46086196513836,8.4846912088058,9.53389173476672,8.04820204198858,8.05680862333469,9.37991144506839,8.86504306027114,5.02626619184305,8.04099930839328,8.56245449635098,6.30770168173747,9.04246778825747,7.9236551532049,2.64335026387038,7.93351699990633,15.9966187901425,9.0572302025571,9.79392706047909,9.4791256572971,6.0042071838115,3.42406127002606,5.21981967698963,5.76446341534038,8.54539709920916,5.76973768919337,7.21367122340745,8.08937467788799,5.61958929674205,4.18196673834171,9.67306294860717,15.1950521770939,15.7790829942313,13.4409876377907,9.50367187121366,8.76697748628982,5.1853960441891,4.87113488332687,4.39596437955849,7.40382983530803,6.22550516883013,10.67808676583,9.23827277032054,7.64531182108503,8.52012509831712,10.1294407096015,13.2405442926338,7.19240343627027,8.10676133875177,14.0026320725922,8.62609239164127,8.18710084870708,9.67316786655138,6.56705082662491,7.3552939543984,2.8946611281802,8.49864674766381,18.9491411770485,10.2667935158476,15.6165478913173,13.6120344007331,12.2279567932526,11.1880511216426,8.39074685788535,8.03939234941574,10.4088404134924,7.97273843287435,8.84861899464985,8.46156411142888,10.8486793936134,27.142431109069,17.9488875660174,4.42587845717133,8.00216564283724,9.63303539926752,8.67366480782304,17.0492343191742,4.29200576247434,12.9358369960665,10.1514073517126,5.60100834105277,6.4521575447189,7.35235624471901,8.49229592366497,15.382806663646,9.64444331107329,12.2539211163422,8.67567554338879,8.51640511249612,11.9303954457061,9.61033060186099,6.92874516484649,6.63725691699814,15.2951800777638,16.3254720760966,15.4656165399836,11.5167738223501,14.4494519533646,11.62927319257,17.8131527443978,12.1209108650805,16.4339114126624,8.4334886859999,16.5016869197099,13.2771446243977,14.0447653344422,13.3239444296237,11.574199891706,10.1083933176096,12.8425548673491,9.87294123612726,11.2652031172402,6.57080782578389,8.04961869282517,10.5853631066382,7.91454014119104,7.26589920131575,7.53911561601948,7.5204576721976,13.1312719796049,7.28702091574627,3.33765543618917,9.91051108627546,13.4151464176095,11.8524497516615,11.4904758772862,9.29520748502971,11.8964650067392,20.9073468892442,19.0333975160175,21.5591959134901,4.77335309007557,12.0207677560831,10.77593175772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|phase1_expression=17.2960754873177,6.63053274514786,4.54999239389536,6.65421264875026,7.51343594919521,10.7442734023609,12.3814699515629,29.6983643915625,79.9679941821467,73.7303257914279,56.8443654508677,45.1510419913604,36.636956205278,34.705899760342,16.6554880907831,27.1316858302367,19.5877325875881,28.7070570475996,28.7940310572051,27.585327366872,5.44277056966847,15.588679338539,22.7243816550874,14.7193028969934,15.5998311125676,8.03924749761028,11.1998119001359,8.40337807474967,10.0712412311878,12.8535366177565,16.6297882991479,18.4158895303293,15.9916844771988,0,30.3294200738838,29.5897668738116,26.9503550266327,8.37063261473815,10.1573594788094,11.5175223674236,11.1763982725893,12.9778642142105,15.0508209439658,10.9530231638752,11.3542162965856,15.2343804294196,9.38869613217647,9.3750817243592,7.24964403023757,5.05517737593137,11.6188729949051,7.18762821824858,32.8853907873163,33.3666585325218,39.3229744996683,13.8920095459411,7.44986943840768,8.25075347643908,11.7343547298567,8.46385566835253,13.9442908771359,12.876092218627,9.78224275722253,10.7987966073768,19.7773272513395,12.7886420690298,6.89080254192331,5.76327457982332,9.95420278161385,13.095576018174,12.4091727197315,17.1390590642282,17.0068776532742,11.5141351262057,10.7346927540425,13.7882817991503,13.2139057199266,9.83192503255945,8.29475279583715,11.7378796079873,12.0763689555181,13.5437476344758,13.4007839520663,14.6318278608237,10.2374826010463,9.72274332063103,11.5321061447273,11.183966749518,16.6597625333005,13.1494514585807,21.7398366526258,15.487629785665,11.5595126730318,7.55584468292944,9.09686984426737,3.13618820968135,6.46044332606059,21.8150812899914,38.4483286812246,37.8073344726064,18.3096445709685,20.5322363862909,15.2883143823987,7.11066703153331,27.277871167413,26.6027858748854,26.7927955857835,6.62266502370548,5.69663344023778,6.67989625791711,9.88866362566974,11.2652226975492,8.76338889573022,12.0578112442098,9.28950786372068,5.6549966098354,5.19109432242185,3.90418263683761,10.6153266233985,7.92657564742305,6.62524555381181,12.6067565815158,14.9113408974498,6.14839673724249,5.65506108396329,5.8755122697976,27.078218138338,44.9927048245056,24.5245538251015,7.33974133083631,15.5550204958333,9.92669381691629,6.95297280769106,9.71718737855256,8.93488591606108,8.76102820565891,9.26738211037878,9.57933673697716,7.32895999457657,6.94458124425364,12.4915625244196,12.1848115349741,10.803727788321,14.0155480587215,7.96027040070536,8.45550553880009,8.33945348581587,6.46758426847539,10.993967639575,10.9681526497335,11.4368230706567,12.4941567483718,10.5657954705727,12.1888258282758,13.3758388665163,14.3304672109315,31.5995934290956,27.5362260612745,18.1864639613179,8.90640821902658,10.0846205791871,10.8037236876609,6.15536312521547,8.46086196513836,8.4846912088058,9.53389173476672,8.04820204198858,8.05680862333469,9.37991144506839,8.86504306027114,5.02626619184305,8.04099930839328,8.56245449635098,6.30770168173747,9.04246778825747,7.9236551532049,2.64335026387038,7.93351699990633,15.9966187901425,9.0572302025571,9.79392706047909,9.4791256572971,6.0042071838115,3.42406127002606,5.21981967698963,5.76446341534038,8.54539709920916,5.76973768919337,7.21367122340745,8.08937467788799,5.61958929674205,4.18196673834171,9.67306294860717,15.1950521770939,15.7790829942313,13.4409876377907,9.50367187121366,8.76697748628982,5.1853960441891,4.87113488332687,4.39596437955849,7.40382983530803,6.22550516883013,10.67808676583,9.23827277032054,7.64531182108503,8.52012509831712,10.1294407096015,13.2405442926338,7.19240343627027,8.10676133875177,14.0026320725922,8.62609239164127,8.18710084870708,9.67316786655138,6.56705082662491,7.3552939543984,2.8946611281802,8.49864674766381,18.9491411770485,10.2667935158476,15.6165478913173,13.6120344007331,12.2279567932526,11.1880511216426,8.39074685788535,8.03939234941574,10.4088404134924,7.97273843287435,8.84861899464985,8.46156411142888,10.8486793936134,27.142431109069,17.9488875660174,4.42587845717133,8.00216564283724,9.63303539926752,8.67366480782304,17.0492343191742,4.29200576247434,12.9358369960665,10.1514073517126,5.60100834105277,6.4521575447189,7.35235624471901,8.49229592366497,15.382806663646,9.64444331107329,12.2539211163422,8.67567554338879,8.51640511249612,11.9303954457061,9.61033060186099,6.92874516484649,6.63725691699814,15.2951800777638,16.3254720760966,15.4656165399836,11.5167738223501,14.4494519533646,11.62927319257,17.8131527443978,12.1209108650805,16.4339114126624,8.4334886859999,16.5016869197099,13.2771446243977,14.0447653344422,13.3239444296237,11.574199891706,10.1083933176096,12.8425548673491,9.87294123612726,11.2652031172402,6.57080782578389,8.04961869282517,10.5853631066382,7.91454014119104,7.26589920131575,7.53911561601948,7.5204576721976,13.1312719796049,7.28702091574627,3.33765543618917,9.91051108627546,13.4151464176095,11.8524497516615,11.4904758772862,9.29520748502971,11.8964650067392,20.9073468892442,19.0333975160175,21.5591959134901,4.77335309007557,12.0207677560831,10.77593175772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| ||
|short_description=p1@Gm10191,p1@Gm13004,p1@Gm7689,p1@Gm8759,p1@LOC100505081,p1@LOC638399,p1@Rpl31 | |short_description=p1@Gm10191,p1@Gm13004,p1@Gm7689,p1@Gm8759,p1@LOC100505081,p1@LOC638399,p1@Rpl31 | ||
}} | }} |
Latest revision as of 03:04, 27 September 2015
Short description: | p1@Gm10191, p1@Gm13004, p1@Gm7689, p1@Gm8759, p1@LOC100505081, p1@LOC638399, p1@Rpl31 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Gm10191_5end, CAGE_peak_1_at_Gm13004_5end, CAGE_peak_1_at_Gm7689_5end, CAGE_peak_1_at_Gm8759_5end, CAGE_peak_1_at_LOC100505081_5end, CAGE_peak_1_at_LOC638399_5end, CAGE_peak_1_at_Rpl31_5end |
Coexpression cluster: | MCL_coexpression_mm9:81 |
Association with transcript: | 49bp_to_ENSMUST00000086535, NM_001252218, NM_001252219, NM_053257, uc007ate.2, uc007atf.2_5end |
EntrezGene: | 100042740,100505081,114641,638399,665533,665562,667682 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
stem cell | 2.44e-16 | 97 |
somatic stem cell | 1.19e-14 | 91 |
multi fate stem cell | 1.19e-14 | 91 |
connective tissue cell | 3.44e-14 | 46 |
mesenchymal cell | 3.44e-14 | 46 |
hematopoietic cell | 1.00e-13 | 32 |
hematopoietic oligopotent progenitor cell | 1.00e-13 | 32 |
hematopoietic stem cell | 1.00e-13 | 32 |
hematopoietic multipotent progenitor cell | 1.00e-13 | 32 |
motile cell | 8.78e-12 | 54 |
hematopoietic lineage restricted progenitor cell | 6.44e-10 | 25 |
lymphocyte | 3.23e-09 | 13 |
common lymphoid progenitor | 3.23e-09 | 13 |
lymphoid lineage restricted progenitor cell | 6.99e-09 | 12 |
T cell | 2.98e-08 | 11 |
pro-T cell | 2.98e-08 | 11 |
leukocyte | 1.34e-07 | 17 |
nongranular leukocyte | 1.34e-07 | 17 |
mature alpha-beta T cell | 1.89e-07 | 9 |
alpha-beta T cell | 1.89e-07 | 9 |
immature T cell | 1.89e-07 | 9 |
mature T cell | 1.89e-07 | 9 |
immature alpha-beta T cell | 1.89e-07 | 9 |
CD4-positive, alpha-beta T cell | 8.76e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 3.44e-14 | 46 |
hematopoietic system | 1.32e-08 | 45 |
blood island | 1.32e-08 | 45 |
hemolymphoid system | 1.59e-08 | 48 |
immune system | 1.59e-08 | 48 |