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(Created page with "{{CL |id=CL:0000223 |name=endodermal cell |namespace=cell |def="A cell of the inner of the three germ layers of the embryo." [MESH:A.16.254.425.407] |xref=FMA:72555 |is_...")
 
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{{CL
{{CL
|id=CL:0000223
|alt_id=
|name=endodermal cell
|namespace=cell
|def="A cell of the inner of the three germ layers of the embryo." [MESH:A.16.254.425.407]
|xref=FMA:72555
|is_a=CL:0000220;;CL:0002321
|synonym="endoderm cell" EXACT []
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A cell of the inner of the three germ layers of the embryo." [MESH:A.16.254.425.407]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0000223
|is_a=CL:0002321
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=endodermal cell
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000925
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|subset=
|synonym="endoderm cell" EXACT []
|union_of=
|xref=FMA:72555
}}
}}

Latest revision as of 16:32, 12 September 2014

Name:endodermal cell
Namespace:FANTOM
Definition:"A cell of the inner of the three germ layers of the embryo." [MESH:A.16.254.425.407]
Xrefs:
links:
FMA:72555
Synonyms: "endoderm cell" EXACT []


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0002321(embryonic cell)
part_of:UBERON:0000925(endoderm)



Children


develops from:CL:0000083 (epithelial cell of pancreas),CL:0002076 (endo-epithelial cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.



Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000223 (endodermal cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.0e-43FFCP PHASE2:Mm9::chr17:71096407..71096414,+#_a22e2c9d6f8ad7846435dc1a722fff7dp@chr17:71096407..71096414, +
3.0e-43FFCP PHASE1:Mm9::chr17:71096407..71096414,+#_a22e2c9d6f8ad7846435dc1a722fff7dp@chr17:71096407..71096414, +
6.2e-43FFCP PHASE1:Mm9::chr2:167904248..167904260,+#_38b9669d58b8a26bfe70dacfed774fcap@chr2:167904248..167904260, +
6.2e-43FFCP PHASE2:Mm9::chr2:167904248..167904260,+#_38b9669d58b8a26bfe70dacfed774fcap@chr2:167904248..167904260, +
2.8e-40FFCP PHASE1:Hg19::chr3:111451297..111451320,+#_8d006fcd013fcfdd8188f769ac9c5fdep3@PLCXD2
2.8e-40FFCP PHASE2:Hg19::chr3:111451297..111451320,+#_8d006fcd013fcfdd8188f769ac9c5fdep3@PLCXD2
2.34e-39FFCP PHASE2:Mm9::chr17:57201412..57201418,-#_0e95c7cb2537261eb2251dff9b9e32c7p@chr17:57201412..57201418, -
2.34e-39FFCP PHASE1:Mm9::chr17:57201412..57201418,-#_0e95c7cb2537261eb2251dff9b9e32c7p@chr17:57201412..57201418, -
4.97e-39FFCP PHASE2:Mm9::chr2:173090551..173090558,+#_f2713f316a98a78b34a48a825576e649p@chr2:173090551..173090558, +
4.97e-39FFCP PHASE1:Mm9::chr4:155434167..155434177,+#_f2713f316a98a78b34a48a825576e649p@chr4:155434167..155434177, +
4.97e-39FFCP PHASE2:Mm9::chr4:155434167..155434177,+#_f2713f316a98a78b34a48a825576e649p@chr4:155434167..155434177, +
4.97e-39FFCP PHASE1:Mm9::chr17:71096223..71096230,-#_f2713f316a98a78b34a48a825576e649p@chr17:71096223..71096230, -
4.97e-39FFCP PHASE1:Mm9::chr2:173090551..173090558,+#_f2713f316a98a78b34a48a825576e649p@chr2:173090551..173090558, +
4.97e-39FFCP PHASE2:Mm9::chr17:71096223..71096230,-#_f2713f316a98a78b34a48a825576e649p@chr17:71096223..71096230, -
8.64e-39FFCP PHASE2:Mm9::chr3:58176362..58176392,-#_322f0e382fc80b7d17fdab52c9ed1b6fp@chr3:58176362..58176392, -
8.64e-39FFCP PHASE1:Mm9::chr3:58176362..58176392,-#_322f0e382fc80b7d17fdab52c9ed1b6fp@chr3:58176362..58176392, -
1.34e-38FFCP PHASE1:Mm9::chr15:77670701..77670706,+#_0c3cbb8b9cfa74e0223ac071e05dfddcp@chr15:77670701..77670706, +
1.34e-38FFCP PHASE2:Mm9::chr15:77670701..77670706,+#_0c3cbb8b9cfa74e0223ac071e05dfddcp@chr15:77670701..77670706, +
3.34e-38FFCP PHASE1:Mm9::chr7:123602470..123602475,-#_7dde4d7a9b800fe97df8b3d750688d20p@chr7:123602470..123602475, -
3.34e-38FFCP PHASE2:Mm9::chr7:123602470..123602475,-#_7dde4d7a9b800fe97df8b3d750688d20p@chr7:123602470..123602475, -
2.63e-37FFCP PHASE1:Mm9::chr7:29710433..29710437,-#_abde730347ef1cf3937ddf4fabe1e739p@chr7:29710433..29710437, -
2.63e-37FFCP PHASE2:Mm9::chr7:29710433..29710437,-#_abde730347ef1cf3937ddf4fabe1e739p@chr7:29710433..29710437, -
2.86e-37FFCP PHASE2:Mm9::chr18:36576247..36576252,-#_098dc8a182d07b1fcb079e89c3e080b4p@chr18:36576247..36576252, -
2.86e-37FFCP PHASE1:Mm9::chr18:36576247..36576252,-#_098dc8a182d07b1fcb079e89c3e080b4p@chr18:36576247..36576252, -
2.22e-36FFCP PHASE1:Mm9::chr10:19251573..19251584,+#_4511af102b71ee1a9b8a05bc2d643407p@chr10:19251573..19251584, +
2.22e-36FFCP PHASE2:Mm9::chr10:19251573..19251584,+#_4511af102b71ee1a9b8a05bc2d643407p@chr10:19251573..19251584, +
1.03e-35FFCP PHASE2:Mm9::chr19:5846964..5846989,+#_e0f7bdeebdf1e3e6edbd80476afd3be6p@chr19:5846964..5846989, +
1.03e-35FFCP PHASE1:Mm9::chr19:5846964..5846989,+#_e0f7bdeebdf1e3e6edbd80476afd3be6p@chr19:5846964..5846989, +
3.74e-35FFCP PHASE2:Mm9::chr1:90912298..90912303,+#_ba87cf13935c1a2741451434b454a9e1p3@1700067G17Rik
3.74e-35FFCP PHASE1:Mm9::chr1:90912298..90912303,+#_ba87cf13935c1a2741451434b454a9e1p3@1700067G17Rik
4.93e-35FFCP PHASE2:Mm9::chr5:135465906..135465912,+#_d7cd2b5b78085782807c0defce782787p@chr5:135465906..135465912, +
4.93e-35FFCP PHASE1:Mm9::chr5:135465906..135465912,+#_d7cd2b5b78085782807c0defce782787p@chr5:135465906..135465912, +
5.46e-35FFCP PHASE2:Mm9::chr3:95898220..95898255,-#_a5e40c46d2f0fd175ccc1ea6a932ce56p@chr3:95898220..95898255, -
5.46e-35FFCP PHASE1:Mm9::chr3:95898220..95898255,-#_a5e40c46d2f0fd175ccc1ea6a932ce56p@chr3:95898220..95898255, -
7.88e-35FFCP PHASE1:Mm9::chr8:122335239..122335244,+#_e615c0e84afa7a471c019ef0c9f6a6f2p@chr8:122335239..122335244, +
7.88e-35FFCP PHASE2:Mm9::chr8:122335239..122335244,+#_e615c0e84afa7a471c019ef0c9f6a6f2p@chr8:122335239..122335244, +
9.26e-35FFCP PHASE2:Mm9::chr5:135442713..135442733,+#_8e6fb09c3fce00c520fce6be75f725e2p@chr5:135442713..135442733, +
9.26e-35FFCP PHASE1:Mm9::chr5:135442713..135442733,+#_8e6fb09c3fce00c520fce6be75f725e2p@chr5:135442713..135442733, +
2.85e-34FFCP PHASE2:Hg19::chr3:189653493..189653498,-#_5e589fff9047e97710e1ec6f8d75a019p@chr3:189653493..189653498, -
2.85e-34FFCP PHASE1:Hg19::chr3:189653493..189653498,-#_5e589fff9047e97710e1ec6f8d75a019p@chr3:189653493..189653498, -
4.1e-34FFCP PHASE2:Hg19::chr15:83953694..83953708,-#_107c7a9dc390024c0153a8a88472e966p4@BNC1
4.1e-34FFCP PHASE1:Hg19::chr15:83953694..83953708,-#_107c7a9dc390024c0153a8a88472e966p4@BNC1
4.53e-34FFCP PHASE1:Hg19::chr19:45281245..45281260,+#_333264f6d64c047c187965896edf7d3ep1@CU688574
4.53e-34FFCP PHASE2:Hg19::chr19:45281245..45281260,+#_333264f6d64c047c187965896edf7d3ep1@CU688574
8.1e-34FFCP PHASE1:Hg19::chr1:200864071..200864088,+#_b62e8b1bebb4aceed57cf8f93d83faadp3@C1orf106
8.1e-34FFCP PHASE2:Hg19::chr1:200864071..200864088,+#_b62e8b1bebb4aceed57cf8f93d83faadp3@C1orf106
1.71e-33FFCP PHASE2:Hg19::chr3:189586378..189586390,+#_5c827a83804e7ed7d8569a2fa8425591p@chr3:189586378..189586390, +
1.71e-33FFCP PHASE1:Hg19::chr3:189586378..189586390,+#_5c827a83804e7ed7d8569a2fa8425591p@chr3:189586378..189586390, +
2.16e-33FFCP PHASE1:Hg19::chr3:111451321..111451372,+#_01239d69cb7df66a11fcf31b4233f55fp3@PHLDB2
2.16e-33FFCP PHASE2:Hg19::chr3:111451321..111451372,+#_01239d69cb7df66a11fcf31b4233f55fp3@PHLDB2
3.72e-33FFCP PHASE1:Mm9::chr17:85278509..85278533,-#_9e0703e2ea20f3f8568693b1e03ef2fep@chr17:85278509..85278533, -
3.72e-33FFCP PHASE2:Mm9::chr17:85278509..85278533,-#_9e0703e2ea20f3f8568693b1e03ef2fep@chr17:85278509..85278533, -
5.83e-33FFCP PHASE2:Hg19::chr3:189027876..189027892,+#_e2b53222d26a8989925c4ce630d5983bp1@TPRG1
5.83e-33FFCP PHASE1:Hg19::chr3:189027876..189027892,+#_e2b53222d26a8989925c4ce630d5983bp1@TPRG1
6.25e-33FFCP PHASE2:Mm9::chr7:117307829..117307835,+#_dc34b7c0fdeb976f32fc456aad4d150bp@chr7:117307829..117307835, +
6.25e-33FFCP PHASE1:Mm9::chr7:117307829..117307835,+#_dc34b7c0fdeb976f32fc456aad4d150bp@chr7:117307829..117307835, +
7.77e-33FFCP PHASE2:Hg19::chr3:69590414..69590433,-#_ab8c083f2b5b09c8b865b4d85338aea8p14@FRMD4B
7.77e-33FFCP PHASE1:Hg19::chr3:69590414..69590433,-#_ab8c083f2b5b09c8b865b4d85338aea8p14@FRMD4B
1.81e-32FFCP PHASE1:Hg19::chr2:131669765..131669776,+#_dfe2f4c0b8df4def0cf79efb5feb5e95p@chr2:131669765..131669776, +
1.81e-32FFCP PHASE2:Hg19::chr2:131669765..131669776,+#_dfe2f4c0b8df4def0cf79efb5feb5e95p@chr2:131669765..131669776, +
1.94e-32FFCP PHASE1:Hg19::chr8:144815895..144815912,-#_ee7363878343bda703e6bc2715f2c25ep4@FAM83H
1.94e-32FFCP PHASE2:Hg19::chr8:144815895..144815912,-#_ee7363878343bda703e6bc2715f2c25ep4@FAM83H
2.17e-32FFCP PHASE1:Hg19::chr17:39942208..39942219,-#_66c39e388c0aba63c82378d2a7ac67f5p7@JUP
2.17e-32FFCP PHASE2:Hg19::chr17:39942208..39942219,-#_66c39e388c0aba63c82378d2a7ac67f5p7@JUP
2.71e-32FFCP PHASE2:Hg19::chr14:65409484..65409495,-#_f7df0111ec67def285fe2e83d94c10c5p2@GPX2
2.71e-32FFCP PHASE1:Hg19::chr14:65409484..65409495,-#_f7df0111ec67def285fe2e83d94c10c5p2@GPX2
5.12e-32FFCP PHASE1:Mm9::chr19:23215457..23215463,-#_6e0297e2ee4c367045265e48ccdcf29ap@chr19:23215457..23215463, -
5.12e-32FFCP PHASE2:Mm9::chr19:23215457..23215463,-#_6e0297e2ee4c367045265e48ccdcf29ap@chr19:23215457..23215463, -
6.59e-32FFCP PHASE1:Mm9::chr13:49066571..49066574,-#_019e33855814ddc1f9730ff021cbbc0fp@chr13:49066571..49066574, -
6.59e-32FFCP PHASE2:Mm9::chr13:49066571..49066574,-#_019e33855814ddc1f9730ff021cbbc0fp@chr13:49066571..49066574, -
9.16e-32FFCP PHASE1:Hg19::chr11:72432903..72432945,-#_eafb1e1102060a794a79c1f19f386552p7@ARAP1
9.16e-32FFCP PHASE2:Hg19::chr11:72432903..72432945,-#_eafb1e1102060a794a79c1f19f386552p7@ARAP1
9.52e-32FFCP PHASE2:Hg19::chr1:153534037..153534052,-#_f27a6296ac54e827bea3c90d0e8f0a99p@chr1:153534037..153534052, -
9.52e-32FFCP PHASE1:Hg19::chr1:153534037..153534052,-#_f27a6296ac54e827bea3c90d0e8f0a99p@chr1:153534037..153534052, -
1.01e-31FFCP PHASE2:Hg19::chr20:52369856..52369863,-#_6141af018eb57fe4d3b2b48a2ba298adp@chr20:52369856..52369863, -
1.01e-31FFCP PHASE1:Hg19::chr20:52369856..52369863,-#_6141af018eb57fe4d3b2b48a2ba298adp@chr20:52369856..52369863, -
1.17e-31FFCP PHASE2:Mm9::chr1:37598054..37598057,+#_e6461a973d588be66c7a11b194579b07p@chr1:37598054..37598057, +
1.17e-31FFCP PHASE1:Mm9::chr1:37598054..37598057,+#_e6461a973d588be66c7a11b194579b07p@chr1:37598054..37598057, +
1.41e-31FFCP PHASE1:Hg19::chr6:56484092..56484104,-#_f44cccc0db1d42bf58b6a257c16888f4p63@DST
1.41e-31FFCP PHASE2:Hg19::chr6:56484092..56484104,-#_f44cccc0db1d42bf58b6a257c16888f4p63@DST
1.65e-31FFCP PHASE2:Mm9::chr17:46693370..46693378,+#_0bb17f0d822a17ad8a3f3582e4bf5a55p@chr17:46693370..46693378, +
1.65e-31FFCP PHASE1:Mm9::chr17:46693370..46693378,+#_0bb17f0d822a17ad8a3f3582e4bf5a55p@chr17:46693370..46693378, +
3.79e-31FFCP PHASE1:Hg19::chr20:6104062..6104096,-#_c970e6bbc11d8f483c23fb7ea0ba6ddbp3@FERMT1
3.79e-31FFCP PHASE2:Hg19::chr20:6104062..6104096,-#_c970e6bbc11d8f483c23fb7ea0ba6ddbp3@FERMT1
3.94e-31FFCP PHASE2:Hg19::chr14:65409502..65409511,-#_2399fa33d89e553549e5a87fc4429e10p3@GPX2
3.94e-31FFCP PHASE1:Hg19::chr14:65409502..65409511,-#_2399fa33d89e553549e5a87fc4429e10p3@GPX2
3.97e-31FFCP PHASE1:Hg19::chr9:139379185..139379201,-#_47ffe529a9e7db1f0fe4eb314daf8efbp@chr9:139379185..139379201, -
3.97e-31FFCP PHASE2:Hg19::chr9:139379185..139379201,-#_47ffe529a9e7db1f0fe4eb314daf8efbp@chr9:139379185..139379201, -
7.78e-31FFCP PHASE1:Hg19::chr20:6103574..6103587,-#_9784028f4d2ac922447571b491952af5p7@FERMT1
7.78e-31FFCP PHASE2:Hg19::chr20:6103574..6103587,-#_9784028f4d2ac922447571b491952af5p7@FERMT1
8.79e-31FFCP PHASE1:Mm9::chr7:135666964..135666972,-#_f101399e354a80210783145a6d917349p@chr7:135666964..135666972, -
8.79e-31FFCP PHASE2:Mm9::chr7:135666964..135666972,-#_f101399e354a80210783145a6d917349p@chr7:135666964..135666972, -
9.9e-31FFCP PHASE1:Hg19::chr6:56483497..56483514,-#_c2c103f31de7eb2ccf42744b698f9676p84@DST
9.9e-31FFCP PHASE2:Hg19::chr6:56483497..56483514,-#_c2c103f31de7eb2ccf42744b698f9676p84@DST
1.0e-30FFCP PHASE1:Mm9::chr4:128908952..128908957,+#_7b71331657a89165680cf58be691a4a0p@chr4:128908952..128908957, +
1.0e-30FFCP PHASE2:Mm9::chr4:128908952..128908957,+#_7b71331657a89165680cf58be691a4a0p@chr4:128908952..128908957, +
1.2e-30FFCP PHASE2:Mm9::chr8:64192378..64192389,+#_b05874be70dfa7e11c84f25f3fb38b0ap@chr8:64192378..64192389, +
1.2e-30FFCP PHASE1:Mm9::chr8:64192378..64192389,+#_b05874be70dfa7e11c84f25f3fb38b0ap@chr8:64192378..64192389, +
1.91e-30FFCP PHASE1:Hg19::chr14:51955524..51955550,+#_be8931311b7dfc34eed06b583a24dcd4p9@FRMD6
1.91e-30FFCP PHASE2:Hg19::chr14:51955524..51955550,+#_be8931311b7dfc34eed06b583a24dcd4p9@FRMD6

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