FFCP PHASE1:Mm9::chr10:126515942..126515974,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=216439 | |EntrezGene=216439 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=2 | |||
|TSSclassifier=NA | |||
|UniProt=Q3UHD9 | |UniProt=Q3UHD9 | ||
|association_with_transcript=0bp_to_ENSMUST00000039259,ENSMUST00000105254,NM_001033263,uc007hhx.1,uc007hhy.1_5end | |association_with_transcript=0bp_to_ENSMUST00000039259,ENSMUST00000105254,NM_001033263,uc007hhx.1,uc007hhy.1_5end | ||
|cluster_id=chr10:126515942..126515974,+ | |||
|description=CAGE_peak_1_at_Agap2_5end | |description=CAGE_peak_1_at_Agap2_5end | ||
|id=chr10:126515942..126515974,+ | |id=chr10:126515942..126515974,+ | ||
|ontology_enrichment_celltype=CL:0000117!3.20e-13!23;CL:0000337!3.20e-13!23;CL:0000540!7.46e-11!33;CL:0000047!7.46e-11!33;CL:0000031!7.46e-11!33;CL:0000404!7.46e-11!33;CL:0002319!3.12e-09!43;CL:0000393!4.61e-09!39;CL:0000211!4.61e-09!39;CL:0000221!4.92e-09!44;CL:0000133!4.92e-09!44;CL:0000055!1.98e-07!50 | |ontology_enrichment_celltype=CL:0000117!3.20e-13!23;CL:0000337!3.20e-13!23;CL:0000540!7.46e-11!33;CL:0000047!7.46e-11!33;CL:0000031!7.46e-11!33;CL:0000404!7.46e-11!33;CL:0002319!3.12e-09!43;CL:0000393!4.61e-09!39;CL:0000211!4.61e-09!39;CL:0000221!4.92e-09!44;CL:0000133!4.92e-09!44;CL:0000055!1.98e-07!50 | ||
|ontology_enrichment_celltype_v019_2=CL:0000117,3.88e-15,23;CL:0000337,3.88e-15,23;CL:0000540,1.65e-10,33;CL:0000047,1.65e-10,33;CL:0000031,1.65e-10,33;CL:0000404,1.65e-10,33;CL:0002319,1.46e-08,43;CL:0000221,4.34e-08,44;CL:0000133,4.34e-08,44;CL:0000393,9.17e-08,39;CL:0000211,9.17e-08,39 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!9.15e-27!73;UBERON:0005743!9.15e-27!73;UBERON:0000073!2.14e-25!75;UBERON:0001016!2.14e-25!75;UBERON:0001049!1.59e-24!52;UBERON:0005068!1.59e-24!52;UBERON:0006241!1.59e-24!52;UBERON:0007135!1.59e-24!52;UBERON:0002346!6.35e-24!71;UBERON:0003075!6.35e-24!71;UBERON:0007284!6.35e-24!71;UBERON:0000955!6.59e-24!50;UBERON:0006238!6.59e-24!50;UBERON:0002616!3.76e-23!49;UBERON:0000033!4.17e-22!63;UBERON:0004121!5.40e-21!102;UBERON:0000924!5.40e-21!102;UBERON:0006601!5.40e-21!102;UBERON:0003056!7.21e-20!49;UBERON:0003080!1.95e-19!40;UBERON:0002020!2.17e-19!34;UBERON:0002780!7.73e-19!39;UBERON:0001890!7.73e-19!39;UBERON:0006240!7.73e-19!39;UBERON:0002791!9.46e-17!29;UBERON:0003528!9.46e-17!29;UBERON:0001893!9.46e-17!29;UBERON:0000956!4.46e-12!21;UBERON:0001869!4.46e-12!21;UBERON:0000203!4.46e-12!21;UBERON:0007811!4.76e-11!86;UBERON:0000153!6.64e-11!94;UBERON:0002619!4.50e-10!17;UBERON:0002021!3.85e-08!10;UBERON:0000411!3.85e-08!10;UBERON:0001950!3.85e-08!10;UBERON:0000025!3.89e-07!114;UBERON:0000468!4.16e-07!333 | |ontology_enrichment_uberon=UBERON:0001017!9.15e-27!73;UBERON:0005743!9.15e-27!73;UBERON:0000073!2.14e-25!75;UBERON:0001016!2.14e-25!75;UBERON:0001049!1.59e-24!52;UBERON:0005068!1.59e-24!52;UBERON:0006241!1.59e-24!52;UBERON:0007135!1.59e-24!52;UBERON:0002346!6.35e-24!71;UBERON:0003075!6.35e-24!71;UBERON:0007284!6.35e-24!71;UBERON:0000955!6.59e-24!50;UBERON:0006238!6.59e-24!50;UBERON:0002616!3.76e-23!49;UBERON:0000033!4.17e-22!63;UBERON:0004121!5.40e-21!102;UBERON:0000924!5.40e-21!102;UBERON:0006601!5.40e-21!102;UBERON:0003056!7.21e-20!49;UBERON:0003080!1.95e-19!40;UBERON:0002020!2.17e-19!34;UBERON:0002780!7.73e-19!39;UBERON:0001890!7.73e-19!39;UBERON:0006240!7.73e-19!39;UBERON:0002791!9.46e-17!29;UBERON:0003528!9.46e-17!29;UBERON:0001893!9.46e-17!29;UBERON:0000956!4.46e-12!21;UBERON:0001869!4.46e-12!21;UBERON:0000203!4.46e-12!21;UBERON:0007811!4.76e-11!86;UBERON:0000153!6.64e-11!94;UBERON:0002619!4.50e-10!17;UBERON:0002021!3.85e-08!10;UBERON:0000411!3.85e-08!10;UBERON:0001950!3.85e-08!10;UBERON:0000025!3.89e-07!114;UBERON:0000468!4.16e-07!333 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.52e-29,54;UBERON:0001017,9.82e-28,73;UBERON:0001049,1.37e-27,52;UBERON:0005068,1.37e-27,52;UBERON:0006241,1.37e-27,52;UBERON:0007135,1.37e-27,52;UBERON:0002346,3.74e-27,64;UBERON:0003075,3.74e-27,64;UBERON:0007284,3.74e-27,64;UBERON:0001016,3.57e-26,75;UBERON:0000955,1.44e-24,47;UBERON:0006238,1.44e-24,47;UBERON:0002616,1.04e-23,46;UBERON:0002020,2.51e-22,34;UBERON:0003056,5.28e-22,49;UBERON:0003080,6.24e-22,40;UBERON:0002780,3.10e-21,39;UBERON:0001890,3.10e-21,39;UBERON:0006240,3.10e-21,39;UBERON:0010371,2.19e-20,73;UBERON:0004121,2.26e-20,95;UBERON:0000924,2.26e-20,95;UBERON:0006601,2.26e-20,95;UBERON:0003528,2.99e-19,29;UBERON:0002791,2.99e-19,29;UBERON:0001893,2.99e-19,29;UBERON:0010314,3.94e-16,92;UBERON:0000956,8.33e-14,21;UBERON:0001869,8.33e-14,21;UBERON:0000203,8.33e-14,21;UBERON:0002619,1.79e-11,17;UBERON:0002021,3.17e-09,10;UBERON:0000411,3.17e-09,10;UBERON:0001950,3.17e-09,10 | |||
|phase1_expression=0.640595388419176,0,0,0,0,0.16787927191189,0,0,0,0,0,0,0,0,0,0,0,0,0,0,32.2314069672554,0.0992909512008853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.503587271902309,0.912392380975631,2.20256102594018,4.69434806608824,0.436050312760893,1.31811709640683,1.1665793944457,0.979904951377538,0,0,0,0,0.257259436035947,0.286533439938757,0.515672092277442,49.9721658323206,57.1310257613796,76.6935998242477,2.03306719241479,1.77858959222228,0,0,0,6.5912024314049,11.9107674649682,22.9154043201736,35.6415677195663,24.3976955167603,45.4185065202048,45.9406565179356,31.1126630005983,48.3061173931911,44.122501757281,61.6648933596577,133.433268299021,119.045063273589,56.447331148523,92.8599582564458,64.5932579490382,57.5116977942845,47.8348218526928,90.3037644360948,54.8009168981022,52.3927785340699,36.3478919359336,0.075726193333184,0.226714680320357,2.31891590961342,0,0,0.539703191637817,0,0.896053774194671,5.33688796500657,0.170430322578058,0,0,0.704217098883403,3.84979432242953,20.3844191765317,28.4426681261332,0,0,0,4.33898742932428,0.776813650941515,1.63286352971307,1.73485326766136,2.43572382649713,1.15307748628029,0.60289056221049,1.17588707135705,0.376999773989026,0.247194967734374,0.722996784599558,0,1.13236794963186,0.662524555381181,0,0,74.9518840349561,69.3268599552536,0.255457055208591,0,0,0,63.6610217470497,189.405249566911,82.5549093381519,264.560615332645,180.023681960553,92.0501037398851,116.651468145718,2.24046600470696,0.497627882440372,0.252722758433675,5.05060454127538,1.43132487258974,0.689706313300419,1.0803727788321,2.56198190320716,4.76255494059295,4.48398020996974,4.96619140166563,6.46758426847539,0.215567992932842,1.32374256117473,2.63926686245923,1.53437012699302,2.50242524303038,0.696504333044333,0.823128545631774,1.79130840136644,0,0,0,0.207125772535502,0,0,0.473489471170421,0,0.308534225774757,1.16266972375204,0.536546802799238,0.817357396570186,1.15191894939436,0.820837320395476,1.37816976227955,2.19299981137998,0.658650345873152,2.68412837520744,285.153170252957,54.0249214991243,0,0,1.49301775374664,0.928946687441754,1.28867461322093,1.81515172161008,0.889512175379481,0.951128130562796,0.949058123089023,0.658795818896044,0.502670417600539,1.39269530428806,1.55971269695296,0.898819408654221,1.51296634912286,0.199141273254367,0.948339504765408,0.913988100877831,0,0.814605311381257,0.969762435838129,1.40271639780637,1.83385957660346,0.738050739898011,0.627994911365499,0,0.296452627087149,0.500535317148282,0.393117990226406,0.224862112384854,0.202860121388503,0,0,0,0.162135226775035,0,1.43768206527355,0,0.312037673114561,0.505157755894224,0.538192240565737,0.482443521363367,0.739012760666419,0.757965647081939,1.14075483509418,0.509235257325564,0.938760993154008,0.837531287209079,0.238043640886014,0.585400943573396,0.630540576424764,0.221464689648775,0.159454768657487,0.491589944147214,0,0.289298117163023,0,0,0,0.275936746304732,30.9862638676438,28.4824398419054,6.22952792431367,2.01976741763498,1.57754109708128,0.780877488593277,2.80050417052639,0.955875191810208,0.668396022247182,1.13230612315533,0.404810701674894,1.46127928955656,2.76701444562566,260.270266301664,2.83880170416537,2.84904965867608,2.76907830901079,9.73323725537959,0,1.69946445308487,2.11626489875326,0.565815239267694,0.295301892880773,0.614870295887855,0,0.363533729477506,0.356497378384721,1.26414703174326,0,0,12.5962654128902,1.98067203434441,3.36332577835162,0.643011105094777,6.20690817747958,5.52943334566419,6.08831376227848,4.56697423671899,0,0,1.10264199027481,0.8244312647074,0.645857706783622,0.72375509913787,0,0.164140899745061,0.874442509889552,31.5223013417866,0,1.23832120777933,0,0.376736914009382,0,0,0,0,0,0.954670618015114,1.26534397432454,1.01659733563424,1.62008011232702,1.25452977608681,1.09181281873089,1.07891477107857,1.65306911450672,0.26175594198403,0.648074866458964,0,0,1.19613236835183,0.66183396182839,3.11121901350476,1.54991788173277,1.35164900392623,2.11243029562357,1.95306577265925,0.524296722128554,0.483168241652012,0.576060012515731,0,0.810900861160657,0.513554785824136,0.129920822977795,0,0.39736270956253,0,0.147689527174577,0.100966449948148,0.0762068066549998,0,0,0.0962118416403295,0,0.453460767230423,0.443971906748129,0.0897138566094757,0,0.386379188064381,2.43987218086537,6.04400360081975,2.14368379079066,0,243.408044167956,231.083268726603,239.470324617668,367.25025066846,204.154590891651,256.833925112498,217.357245074641,262.987582682945,243.337473624518,235.063181535326,1.66059756134683,8.37952234142165,4.43907374960749,8.99494853152688,5.8691685535835,5.33146174505041,5.778414922842,5.97501665992793,5.45562656306086,7.32821914115013,6.08350319736575,7.1678009726709,8.70866019469906,7.49094283136971,8.55788487438638,8.09699275181225,9.03897742369873,6.36600427530227,6.1812885120496,5.7407578852415,8.57173130963539,4.79184676630211,5.48403236878838,7.26732083161643,7.62285981364178,6.8537832392258,4.20734337607377,5.26139422875686,4.34573164306758,3.92799590160417,7.5926411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| |phase1_expression=0.640595388419176,0,0,0,0,0.16787927191189,0,0,0,0,0,0,0,0,0,0,0,0,0,0,32.2314069672554,0.0992909512008853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.503587271902309,0.912392380975631,2.20256102594018,4.69434806608824,0.436050312760893,1.31811709640683,1.1665793944457,0.979904951377538,0,0,0,0,0.257259436035947,0.286533439938757,0.515672092277442,49.9721658323206,57.1310257613796,76.6935998242477,2.03306719241479,1.77858959222228,0,0,0,6.5912024314049,11.9107674649682,22.9154043201736,35.6415677195663,24.3976955167603,45.4185065202048,45.9406565179356,31.1126630005983,48.3061173931911,44.122501757281,61.6648933596577,133.433268299021,119.045063273589,56.447331148523,92.8599582564458,64.5932579490382,57.5116977942845,47.8348218526928,90.3037644360948,54.8009168981022,52.3927785340699,36.3478919359336,0.075726193333184,0.226714680320357,2.31891590961342,0,0,0.539703191637817,0,0.896053774194671,5.33688796500657,0.170430322578058,0,0,0.704217098883403,3.84979432242953,20.3844191765317,28.4426681261332,0,0,0,4.33898742932428,0.776813650941515,1.63286352971307,1.73485326766136,2.43572382649713,1.15307748628029,0.60289056221049,1.17588707135705,0.376999773989026,0.247194967734374,0.722996784599558,0,1.13236794963186,0.662524555381181,0,0,74.9518840349561,69.3268599552536,0.255457055208591,0,0,0,63.6610217470497,189.405249566911,82.5549093381519,264.560615332645,180.023681960553,92.0501037398851,116.651468145718,2.24046600470696,0.497627882440372,0.252722758433675,5.05060454127538,1.43132487258974,0.689706313300419,1.0803727788321,2.56198190320716,4.76255494059295,4.48398020996974,4.96619140166563,6.46758426847539,0.215567992932842,1.32374256117473,2.63926686245923,1.53437012699302,2.50242524303038,0.696504333044333,0.823128545631774,1.79130840136644,0,0,0,0.207125772535502,0,0,0.473489471170421,0,0.308534225774757,1.16266972375204,0.536546802799238,0.817357396570186,1.15191894939436,0.820837320395476,1.37816976227955,2.19299981137998,0.658650345873152,2.68412837520744,285.153170252957,54.0249214991243,0,0,1.49301775374664,0.928946687441754,1.28867461322093,1.81515172161008,0.889512175379481,0.951128130562796,0.949058123089023,0.658795818896044,0.502670417600539,1.39269530428806,1.55971269695296,0.898819408654221,1.51296634912286,0.199141273254367,0.948339504765408,0.913988100877831,0,0.814605311381257,0.969762435838129,1.40271639780637,1.83385957660346,0.738050739898011,0.627994911365499,0,0.296452627087149,0.500535317148282,0.393117990226406,0.224862112384854,0.202860121388503,0,0,0,0.162135226775035,0,1.43768206527355,0,0.312037673114561,0.505157755894224,0.538192240565737,0.482443521363367,0.739012760666419,0.757965647081939,1.14075483509418,0.509235257325564,0.938760993154008,0.837531287209079,0.238043640886014,0.585400943573396,0.630540576424764,0.221464689648775,0.159454768657487,0.491589944147214,0,0.289298117163023,0,0,0,0.275936746304732,30.9862638676438,28.4824398419054,6.22952792431367,2.01976741763498,1.57754109708128,0.780877488593277,2.80050417052639,0.955875191810208,0.668396022247182,1.13230612315533,0.404810701674894,1.46127928955656,2.76701444562566,260.270266301664,2.83880170416537,2.84904965867608,2.76907830901079,9.73323725537959,0,1.69946445308487,2.11626489875326,0.565815239267694,0.295301892880773,0.614870295887855,0,0.363533729477506,0.356497378384721,1.26414703174326,0,0,12.5962654128902,1.98067203434441,3.36332577835162,0.643011105094777,6.20690817747958,5.52943334566419,6.08831376227848,4.56697423671899,0,0,1.10264199027481,0.8244312647074,0.645857706783622,0.72375509913787,0,0.164140899745061,0.874442509889552,31.5223013417866,0,1.23832120777933,0,0.376736914009382,0,0,0,0,0,0.954670618015114,1.26534397432454,1.01659733563424,1.62008011232702,1.25452977608681,1.09181281873089,1.07891477107857,1.65306911450672,0.26175594198403,0.648074866458964,0,0,1.19613236835183,0.66183396182839,3.11121901350476,1.54991788173277,1.35164900392623,2.11243029562357,1.95306577265925,0.524296722128554,0.483168241652012,0.576060012515731,0,0.810900861160657,0.513554785824136,0.129920822977795,0,0.39736270956253,0,0.147689527174577,0.100966449948148,0.0762068066549998,0,0,0.0962118416403295,0,0.453460767230423,0.443971906748129,0.0897138566094757,0,0.386379188064381,2.43987218086537,6.04400360081975,2.14368379079066,0,243.408044167956,231.083268726603,239.470324617668,367.25025066846,204.154590891651,256.833925112498,217.357245074641,262.987582682945,243.337473624518,235.063181535326,1.66059756134683,8.37952234142165,4.43907374960749,8.99494853152688,5.8691685535835,5.33146174505041,5.778414922842,5.97501665992793,5.45562656306086,7.32821914115013,6.08350319736575,7.1678009726709,8.70866019469906,7.49094283136971,8.55788487438638,8.09699275181225,9.03897742369873,6.36600427530227,6.1812885120496,5.7407578852415,8.57173130963539,4.79184676630211,5.48403236878838,7.26732083161643,7.62285981364178,6.8537832392258,4.20734337607377,5.26139422875686,4.34573164306758,3.92799590160417,7.5926411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| ||
|short_description=p1@Agap2 | |short_description=p1@Agap2 | ||
}} | }} |
Latest revision as of 17:16, 25 September 2015
Short description: | p1@Agap2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Agap2_5end |
Coexpression cluster: | MCL_coexpression_mm9:2 |
Association with transcript: | 0bp_to_ENSMUST00000039259, ENSMUST00000105254, NM_001033263, uc007hhx.1, uc007hhy.1_5end |
EntrezGene: | Agap2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 3.88e-15 | 23 |
neuroblast (sensu Vertebrata) | 3.88e-15 | 23 |
neuron | 1.65e-10 | 33 |
neuronal stem cell | 1.65e-10 | 33 |
neuroblast | 1.65e-10 | 33 |
electrically signaling cell | 1.65e-10 | 33 |
neural cell | 1.46e-08 | 43 |
ectodermal cell | 4.34e-08 | 44 |
neurectodermal cell | 4.34e-08 | 44 |
electrically responsive cell | 9.17e-08 | 39 |
electrically active cell | 9.17e-08 | 39 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 2.52e-29 | 54 |
central nervous system | 9.82e-28 | 73 |
neural tube | 1.37e-27 | 52 |
neural rod | 1.37e-27 | 52 |
future spinal cord | 1.37e-27 | 52 |
neural keel | 1.37e-27 | 52 |
neurectoderm | 3.74e-27 | 64 |
neural plate | 3.74e-27 | 64 |
presumptive neural plate | 3.74e-27 | 64 |
nervous system | 3.57e-26 | 75 |
brain | 1.44e-24 | 47 |
future brain | 1.44e-24 | 47 |
regional part of brain | 1.04e-23 | 46 |
gray matter | 2.51e-22 | 34 |
pre-chordal neural plate | 5.28e-22 | 49 |
anterior neural tube | 6.24e-22 | 40 |
regional part of forebrain | 3.10e-21 | 39 |
forebrain | 3.10e-21 | 39 |
future forebrain | 3.10e-21 | 39 |
ecto-epithelium | 2.19e-20 | 73 |
ectoderm-derived structure | 2.26e-20 | 95 |
ectoderm | 2.26e-20 | 95 |
presumptive ectoderm | 2.26e-20 | 95 |
brain grey matter | 2.99e-19 | 29 |
regional part of telencephalon | 2.99e-19 | 29 |
telencephalon | 2.99e-19 | 29 |
structure with developmental contribution from neural crest | 3.94e-16 | 92 |
cerebral cortex | 8.33e-14 | 21 |
cerebral hemisphere | 8.33e-14 | 21 |
pallium | 8.33e-14 | 21 |
regional part of cerebral cortex | 1.79e-11 | 17 |
occipital lobe | 3.17e-09 | 10 |
visual cortex | 3.17e-09 | 10 |
neocortex | 3.17e-09 | 10 |