FFCP PHASE1:Hg19::chr12:56352244..56352258,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6490 | |EntrezGene=6490 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10880 | |HGNC=10880 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=202bp_to_ENST00000556802_5end | |association_with_transcript=202bp_to_ENST00000556802_5end | ||
|cluster_id=chr12:56352244..56352258,- | |||
|coexpression_cluster_id=C206 | |||
|description=CAGE_peak_5_at_PMEL_5end | |description=CAGE_peak_5_at_PMEL_5end | ||
|id=chr12:56352244..56352258,- | |id=chr12:56352244..56352258,- | ||
|ontology_enrichment_celltype=CL:0000147!2.71e-47!14;CL:0000148!9.93e-47!10;CL:0000541!9.93e-47!10;CL:0002322!2.49e-23!5;CL:0000710!2.25e-22!20;CL:0000075!4.69e-16!27;CL:0002567!1.84e-15!3;CL:0000325!2.67e-15!39;CL:0002077!8.91e-13!33;CL:0000149!1.53e-11!4;CL:0000333!2.36e-09!41;CL:0000133!7.92e-09!59;CL:0002586!2.60e-07!3;CL:0000221!5.57e-07!71 | |ontology_enrichment_celltype=CL:0000147!2.71e-47!14;CL:0000148!9.93e-47!10;CL:0000541!9.93e-47!10;CL:0002322!2.49e-23!5;CL:0000710!2.25e-22!20;CL:0000075!4.69e-16!27;CL:0002567!1.84e-15!3;CL:0000325!2.67e-15!39;CL:0002077!8.91e-13!33;CL:0000149!1.53e-11!4;CL:0000333!2.36e-09!41;CL:0000133!7.92e-09!59;CL:0002586!2.60e-07!3;CL:0000221!5.57e-07!71 | ||
|ontology_enrichment_celltype_v019=CL:0000148;5.64e-96;10!CL:0000147;1.31e-68;14!CL:0002567;3.68e-59;3!CL:0000710;4.63e-48;20!CL:0000075;1.30e-35;27!CL:0002077;6.09e-25;34!CL:0002566;3.45e-21;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000148,5.26e-96,10;CL:0000541,5.26e-96,10;CL:0000147,1.25e-68,14;CL:0002567,3.33e-59,3;CL:0000710,4.47e-48,20;CL:0000075,1.27e-35,27;CL:0002077,2.76e-28,34;CL:0000333,2.37e-22,41;CL:0002566,3.45e-21,1;CL:0000133,1.03e-15,59;CL:0000221,6.41e-13,72 | |||
|ontology_enrichment_development_v019=CL:0000133;1.16e-08;59!UBERON:0003056;7.50e-08;3!CL:0000221;2.61e-07;72 | |||
|ontology_enrichment_disease=DOID:1909!5.03e-11!2 | |||
|ontology_enrichment_disease_v019=DOID:1909;1.10e-40;2 | |||
|ontology_enrichment_disease_v019_2=DOID:1909,1.10e-40,2 | |||
|ontology_enrichment_uberon=UBERON:0000966!3.02e-09!5;UBERON:0005388!3.02e-09!5;UBERON:0001802!3.02e-09!5;UBERON:0001781!2.60e-07!3;UBERON:0001782!2.60e-07!3;UBERON:0005424!2.60e-07!3 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
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|short_description=p5@PMEL | |short_description=p5@PMEL | ||
}} | }} |
Latest revision as of 09:12, 19 September 2015
Short description: | p5@PMEL |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_PMEL_5end |
Coexpression cluster: | C206_melanoma_somatostatinoma_nonsmall_small_neuroblastoma_smallcell_pituitary |
Association with transcript: | 202bp_to_ENST00000556802_5end |
EntrezGene: | PMEL |
HGNC: | 10880 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
melanocyte | 5.26e-96 | 10 |
melanoblast | 5.26e-96 | 10 |
pigment cell | 1.25e-68 | 14 |
light melanocyte | 3.33e-59 | 3 |
neurecto-epithelial cell | 4.47e-48 | 20 |
columnar/cuboidal epithelial cell | 1.27e-35 | 27 |
ecto-epithelial cell | 2.76e-28 | 34 |
migratory neural crest cell | 2.37e-22 | 41 |
dark melanocyte | 3.45e-21 | 1 |
neurectodermal cell | 1.03e-15 | 59 |
ectodermal cell | 6.41e-13 | 72 |
Ontology term | p-value | n |
---|---|---|
melanoma | 1.10e-40 | 2 |