FFCP PHASE1:Hg19::chr12:56351122..56351134,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6490 | |EntrezGene=6490 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10880 | |HGNC=10880 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000549564_5end | |association_with_transcript=0bp_to_ENST00000549564_5end | ||
|cluster_id=chr12:56351122..56351134,- | |||
|coexpression_cluster_id=C58 | |||
|description=CAGE_peak_9_at_PMEL_5end | |description=CAGE_peak_9_at_PMEL_5end | ||
|id=chr12:56351122..56351134,- | |id=chr12:56351122..56351134,- | ||
|ontology_enrichment_celltype=CL:0000147!6.84e-69!14;CL:0000148!5.10e-58!10;CL:0000541!5.10e-58!10;CL:0000710!4.09e-28!20;CL:0000149!8.52e-24!4;CL:0000325!5.02e-23!39;CL:0000075!2.38e-20!27;CL:0002077!1.16e-19!33;CL:0002567!6.05e-19!3;CL:0002322!1.06e-18!5;CL:0002586!5.34e-18!3;CL:0000133!9.97e-14!59;CL:0000221!7.06e-13!71;CL:0000333!4.30e-12!41;CL:0000540!3.51e-09!6;CL:0000031!3.51e-09!6;CL:0000404!3.51e-09!6;CL:0002566!2.23e-07!1;CL:0000047!5.39e-07!8 | |ontology_enrichment_celltype=CL:0000147!6.84e-69!14;CL:0000148!5.10e-58!10;CL:0000541!5.10e-58!10;CL:0000710!4.09e-28!20;CL:0000149!8.52e-24!4;CL:0000325!5.02e-23!39;CL:0000075!2.38e-20!27;CL:0002077!1.16e-19!33;CL:0002567!6.05e-19!3;CL:0002322!1.06e-18!5;CL:0002586!5.34e-18!3;CL:0000133!9.97e-14!59;CL:0000221!7.06e-13!71;CL:0000333!4.30e-12!41;CL:0000540!3.51e-09!6;CL:0000031!3.51e-09!6;CL:0000404!3.51e-09!6;CL:0002566!2.23e-07!1;CL:0000047!5.39e-07!8 | ||
|ontology_enrichment_celltype_v019=CL:0000148;3.44e-96;10!CL:0000147;2.14e-89;14!CL:0002567;9.99e-60;3!CL:0000710;3.62e-48;20!CL:0000075;1.09e-35;27!CL:0002077;5.47e-25;34!CL:0002566;6.31e-21;1!CL:0000149;9.46e-21;4!CL:0002586;8.29e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000148,3.44e-96,10;CL:0000541,3.44e-96,10;CL:0000147,2.14e-89,14;CL:0002567,9.99e-60,3;CL:0000710,3.62e-48,20;CL:0000075,1.09e-35,27;CL:0002077,2.44e-28,34;CL:0000333,2.15e-22,41;CL:0002566,6.31e-21,1;CL:0000149,9.46e-21,4;CL:0000133,9.58e-16,59;CL:0000221,6.06e-13,72;CL:0002586,8.29e-08,3 | |||
|ontology_enrichment_development_v019=CL:0000133;1.10e-08;59!CL:0000221;2.52e-07;72 | |||
|ontology_enrichment_disease=DOID:1909!3.09e-13!2 | |||
|ontology_enrichment_disease_v019=DOID:1909;1.64e-40;2 | |||
|ontology_enrichment_disease_v019_2=DOID:1909,1.64e-40,2 | |||
|ontology_enrichment_uberon=UBERON:0000966!8.08e-19!5;UBERON:0005388!8.08e-19!5;UBERON:0001802!8.08e-19!5;UBERON:0001781!5.34e-18!3;UBERON:0001782!5.34e-18!3;UBERON:0005424!5.34e-18!3;UBERON:0000970!4.45e-07!20;UBERON:0007029!4.57e-07!1;UBERON:0002104!9.96e-07!21 | |||
|ontology_enrichment_uberon_v019=UBERON:0001781;8.29e-08;3!UBERON:0001782;8.29e-08;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001782,8.29e-08,3;UBERON:0005424,8.29e-08,3 | |||
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|short_description=p9@PMEL | |short_description=p9@PMEL | ||
}} | }} |
Latest revision as of 09:05, 19 September 2015
Short description: | p9@PMEL |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_PMEL_5end |
Coexpression cluster: | C58_Melanocyte_melanoma_retina_Retinal_eye_migratory_H9 |
Association with transcript: | 0bp_to_ENST00000549564_5end |
EntrezGene: | PMEL |
HGNC: | 10880 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
melanocyte | 3.44e-96 | 10 |
melanoblast | 3.44e-96 | 10 |
pigment cell | 2.14e-89 | 14 |
light melanocyte | 9.99e-60 | 3 |
neurecto-epithelial cell | 3.62e-48 | 20 |
columnar/cuboidal epithelial cell | 1.09e-35 | 27 |
ecto-epithelial cell | 2.44e-28 | 34 |
migratory neural crest cell | 2.15e-22 | 41 |
dark melanocyte | 6.31e-21 | 1 |
visual pigment cell | 9.46e-21 | 4 |
neurectodermal cell | 9.58e-16 | 59 |
ectodermal cell | 6.06e-13 | 72 |
retinal pigment epithelial cell | 8.29e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
pigmented layer of retina | 8.29e-08 | 3 |
presumptive retinal pigmented epithelium | 8.29e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
melanoma | 1.64e-40 | 2 |