FFCP PHASE1:Hg19::chr12:46662836..46662861,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=81539 | |EntrezGene=81539 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=13447 | |HGNC=13447 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-10bp_to_ENST00000549633_5end | |association_with_transcript=-10bp_to_ENST00000549633_5end | ||
|cluster_id=chr12:46662836..46662861,- | |||
|coexpression_cluster_id=C3281 | |||
|description=CAGE_peak_4_at_SLC38A1_5end | |description=CAGE_peak_4_at_SLC38A1_5end | ||
|id=chr12:46662836..46662861,- | |id=chr12:46662836..46662861,- | ||
|ontology_enrichment_celltype=CL:0000791!3.83e-12!18;CL:0000789!3.83e-12!18;CL:0002420!3.83e-12!18;CL:0002419!3.83e-12!18;CL:0000790!3.83e-12!18;CL:0000542!1.65e-11!53;CL:0000051!1.65e-11!53;CL:0000838!2.79e-11!52;CL:0000084!7.51e-10!25;CL:0000827!7.51e-10!25;CL:0000625!3.37e-08!11;CL:0002076!1.85e-07!43 | |ontology_enrichment_celltype=CL:0000791!3.83e-12!18;CL:0000789!3.83e-12!18;CL:0002420!3.83e-12!18;CL:0002419!3.83e-12!18;CL:0000790!3.83e-12!18;CL:0000542!1.65e-11!53;CL:0000051!1.65e-11!53;CL:0000838!2.79e-11!52;CL:0000084!7.51e-10!25;CL:0000827!7.51e-10!25;CL:0000625!3.37e-08!11;CL:0002076!1.85e-07!43 | ||
|ontology_enrichment_celltype_v019=CL:0000791;3.25e-12;18!CL:0000789;3.25e-12;18!CL:0002419;3.25e-12;18!CL:0000084;4.47e-10;25!CL:0000625;3.03e-08;11!CL:0000542;6.71e-07;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,3.56e-12,18;CL:0000789,3.56e-12,18;CL:0002420,3.56e-12,18;CL:0002419,3.56e-12,18;CL:0000790,3.56e-12,18;CL:0000542,1.35e-11,53;CL:0000051,1.35e-11,53;CL:0000838,2.29e-11,52;CL:0000084,5.99e-10,25;CL:0000827,5.99e-10,25;CL:0000625,3.22e-08,11;CL:0002076,4.41e-08,42;CL:0000223,4.81e-07,58 | |||
|ontology_enrichment_development_v019=CL:0000790;3.25e-12;18!CL:0000051;6.71e-07;53 | |||
|ontology_enrichment_disease=DOID:305!6.98e-16!106;DOID:0050687!1.49e-13!143;DOID:162!2.63e-12!235;DOID:14566!2.71e-11!239 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,5.92e-16,106;DOID:0050687,1.29e-13,143;DOID:162,3.35e-12,235;DOID:14566,3.19e-11,239 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
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| ||
|short_description=p4@SLC38A1 | |short_description=p4@SLC38A1 | ||
}} | }} |
Latest revision as of 10:53, 18 September 2015
Short description: | p4@SLC38A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_SLC38A1_5end |
Coexpression cluster: | C3281_bronchogenic_CD4_CD8_acute_Dendritic_somatostatinoma_small |
Association with transcript: | -10bp_to_ENST00000549633_5end |
EntrezGene: | SLC38A1 |
HGNC: | 13447 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 3.56e-12 | 18 |
alpha-beta T cell | 3.56e-12 | 18 |
immature T cell | 3.56e-12 | 18 |
mature T cell | 3.56e-12 | 18 |
immature alpha-beta T cell | 3.56e-12 | 18 |
lymphocyte | 1.35e-11 | 53 |
common lymphoid progenitor | 1.35e-11 | 53 |
lymphoid lineage restricted progenitor cell | 2.29e-11 | 52 |
T cell | 5.99e-10 | 25 |
pro-T cell | 5.99e-10 | 25 |
CD8-positive, alpha-beta T cell | 3.22e-08 | 11 |
endo-epithelial cell | 4.41e-08 | 42 |
endodermal cell | 4.81e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 5.92e-16 | 106 |
cell type cancer | 1.29e-13 | 143 |
cancer | 3.35e-12 | 235 |
disease of cellular proliferation | 3.19e-11 | 239 |