FFCP PHASE1:Mm9::chr2:174170893..174170952,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=989 | |||
|TSSclassifier=NA | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr2:174170893..174170952,+ | |||
|description=CAGE_peak_at_chr2:174170893..174170952,+ | |description=CAGE_peak_at_chr2:174170893..174170952,+ | ||
|id=chr2:174170893..174170952,+ | |id=chr2:174170893..174170952,+ | ||
|ontology_enrichment_celltype=CL:0000055!2.20e-09!50;CL:0002319!3.62e-08!43;CL:0000221!1.25e-07!44;CL:0000133!1.25e-07!44 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,4.10e-08,43;CL:0000221,1.41e-07,44;CL:0000133,1.41e-07,44 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!9.96e-16!73;UBERON:0005743!9.96e-16!73;UBERON:0000073!8.72e-15!75;UBERON:0001016!8.72e-15!75;UBERON:0004121!7.72e-11!102;UBERON:0000924!7.72e-11!102;UBERON:0006601!7.72e-11!102;UBERON:0001049!9.68e-11!52;UBERON:0005068!9.68e-11!52;UBERON:0006241!9.68e-11!52;UBERON:0007135!9.68e-11!52;UBERON:0002346!1.68e-10!71;UBERON:0003075!1.68e-10!71;UBERON:0007284!1.68e-10!71;UBERON:0002616!1.49e-09!49;UBERON:0000955!2.20e-09!50;UBERON:0006238!2.20e-09!50;UBERON:0003080!6.67e-07!40;UBERON:0002780!7.79e-07!39;UBERON:0001890!7.79e-07!39;UBERON:0006240!7.79e-07!39 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.09e-15,73;UBERON:0001016,9.57e-15,75;UBERON:0000073,9.26e-12,54;UBERON:0001049,1.09e-10,52;UBERON:0005068,1.09e-10,52;UBERON:0006241,1.09e-10,52;UBERON:0007135,1.09e-10,52;UBERON:0004121,2.02e-09,95;UBERON:0000924,2.02e-09,95;UBERON:0006601,2.02e-09,95;UBERON:0002346,3.36e-09,64;UBERON:0003075,3.36e-09,64;UBERON:0007284,3.36e-09,64;UBERON:0002616,3.00e-08,46;UBERON:0010314,3.50e-08,92;UBERON:0000955,4.28e-08,47;UBERON:0006238,4.28e-08,47;UBERON:0003080,7.53e-07,40;UBERON:0002780,8.81e-07,39;UBERON:0001890,8.81e-07,39;UBERON:0006240,8.81e-07,39 | |||
|phase1_expression=1.28119077683835,0.348975407639361,1.81999695755814,0.60492842261366,1.00179145989269,0.671517087647559,1.16806320297763,0.645616617207881,0.985521055061667,0.70219357896598,0.513653904676515,0.957265907944037,1.19840510951844,0.437102012094987,2.6648780945253,0.404950534779652,0,1.10411757875383,1.64537320326887,2.97072756258621,2.21112554392781,2.18440092641948,1.30599894569468,1.91990907352088,1.14704640533585,0.57423196411502,0,1.29282739611533,2.09025761402011,0.504060259519861,0.443461021310609,0,0,0,1.1554064790051,0.664938581433969,0.204169356262369,1.67412652294763,1.5626706890476,1.57057123192139,0.588231488031014,1.36609096991689,0.971020706062307,3.02152363141385,3.75094645512204,2.56965453026354,9.38869613217647,4.36050312760893,4.17403747195497,6.41618666945135,5.87942970826523,7.18762821824858,0.838913030288682,2.17608642603403,2.01656279485478,2.82985379639542,4.01146815914259,7.73508138416164,3.43937983461316,5.28990979272033,1.26766280701236,5.08266798103698,5.33576877666684,2.6996991518442,6.92206453796882,5.6838409195688,7.49000276296012,15.7529505181837,1.97010263386108,3.24014251996058,1.68259969081106,7.42692559449889,6.40518768759679,2.20483438586917,1.91690942036473,0.919218786610021,5.50579404996943,5.87361755191863,6.29786786350598,2.37395317914349,4.39140689291566,3.64639359389732,5.862842979029,8.4414391504752,8.09830713217094,8.54422897873636,6.26435395516053,4.10078780815661,1.59025005999687,1.43585964202892,1.73918693221007,6.0229671388697,0.679971333707751,3.77792234146472,3.24888208723835,0.896053774194671,1.96622188184453,5.11290967734173,4.93593408745451,6.00677276667578,1.12674735821344,3.84979432242953,0,7.11066703153331,5.62876706629157,3.04031838570118,4.54972000513305,1.82694207550496,1.03575153458869,2.67195850316685,6.24547176358089,3.65358573974569,2.99800146432876,4.6724018571313,5.87943535678524,2.63899841792318,2.47194967734374,5.63937491987655,1.76922110389975,3.558870698843,1.32504911076236,1.45462575940567,0,2.34224637609238,3.14170060220183,1.02182822083437,1.67741174308288,2.39961092397363,1.39777249780371,3.14560342750128,2.74500361691176,2.01046963380583,2.43354048269187,3.3243009452943,5.194701113989,3.24482526135515,2.85150218780886,2.23932547098167,1.76905930903572,1.89397670297827,1.56144531555244,2.75882525320168,1.44049703844279,2.86339153887859,2.10913147369116,1.5373646434182,2.34254311399322,2.84573707812917,1.72454394346274,2.45837904218165,1.93546236580344,5.2606975782618,2.50242524303038,2.43776516565517,4.7329891373827,3.18454826909589,0,1.02939162845886,1.42081749697796,0.828503090142008,2.34526059981096,2.52086886045421,1.89395788468168,2.36117078096885,3.39387648352232,2.79040733700489,3.21928081679543,2.91913355917924,3.12663714835613,2.62667942526552,2.1888578577381,1.60819986167866,0.878200461164203,1.74468344388483,2.94405927989778,2.36680608472354,0.991256348951394,1.05780226665418,1.06644125267617,5.10920678092965,2.31961430379768,2.21851877085677,2.44615848229357,1.33157938278791,1.42358718463353,1.31759163779209,1.75934646160189,1.1937388322469,1.36474860983384,1.79763881730844,1.72910439899755,1.1948476395262,3.79335801906163,1.82797620175566,2.25415471346161,3.46207257337034,1.93952487167626,1.82353131714828,1.7706230394792,1.62371162777562,1.41298855057237,0.493588655687202,1.77871576252289,1.16791574001266,0.393117990226406,0.674586337154561,1.01430060694251,2.17059443777175,1.78238096246994,2.30156909960649,1.78348749452539,1.37280706594041,11.5014565221884,0.372140947668503,0.624075346229121,0.505157755894224,1.79397413521912,1.4473305640901,1.66277871149944,2.65287976478679,3.09633455239849,4.2436271443797,2.11221223459652,3.01511263395268,4.04674189506223,2.92700471786698,2.04925687338048,1.99318220683897,2.07291199254733,1.63863314715738,2.93564469172023,0.867894351489069,6.03165135757089,4.89515115436839,1.96705709207614,1.65562047782839,5.77982123956051,5.15731421005694,2.95082901678016,4.79694761688309,3.15508219416257,3.51394869866975,3.66219776145758,4.54040716109849,4.67877215573028,5.09537755419898,5.26253912177363,4.67609372658099,3.16230222357219,2.24924921495265,1.27746076687442,4.62970569534864,1.95464351224291,1.31976098378028,0,5.09839335925461,2.72091201268276,2.07465587731488,6.496641643377,3.07435147943927,2.06742634534577,1.45413491791002,3.56497378384721,2.52829406348653,0,3.09406629744561,13.9580238359053,3.6012218806262,4.65691261617916,6.43011105094777,14.7192393923087,13.3776613201553,13.3284706687718,19.4857567433344,1.87737366450968,2.96564899209348,0.882113592219848,0.98931751764888,2.09903754704677,1.14594557363496,1.43246812803764,2.1338316966858,2.33184669303881,4.45020724825223,2.05045056957423,2.88941615148511,3.88908507476395,1.50694765603753,0.820165366326151,3.20289442489132,0.849892149969277,0.979660166265606,0.690999869022119,1.90934123603023,3.32152793260192,3.45643094115643,3.02414954301044,3.13632444021703,2.40198820120795,1.75323650300267,1.07449492442937,1.83229159388821,1.42576470620972,1.24267862617385,2.25477175473676,2.0932316446157,2.31641886639937,1.16670713006429,3.48731523389874,3.37912250981556,2.22978753426933,1.0416350787516,1.36317147753424,0.724752362478018,0.864090018773596,0.316011120628178,2.43270258348197,3.08132871494482,1.16928740680016,1.61124026100733,1.78813219303138,0.841368146639782,0.443068581523732,0.605798699688886,0.990688486514998,0.705783295957884,1.07203668813728,0.865906574762965,0.818138315270983,1.36038230169127,1.10992976687032,1.07656627931371,0.839423081820392,1.9318959403219,3.00291960721891,0.73260649706906,1.2862102744744,2.00628841614145,3.95326289831947,2.76195141904306,4.01026859407578,4.81188910562325,4.11049511862385,3.0215755895588,4.72515750162264,4.5032120322422,4.98456649882625,3.10656187051092,2.90604573235695,2.39414924040619,3.41467211508268,2.91728060481953,4.19226325255965,6.25067928730048,5.11167473943715,5.97501665992793,8.66481865897901,4.29585259998456,3.54871019846336,5.09291121742406,5.05664140337365,4.1616349063165,3.73330548211486,3.81034953026459,4.51948871184936,5.20854895252004,2.06042950401653,5.88795680537589,6.17164654293748,5.32427418478012,4.76872379894642,4.21504608233753,2.91739079287525,3.9768865709088,4.93905526756486,5.26139422875686,5.02475221229689,3.36685362994643,3.6776855618494,4.43270170690036,6.54769669071503,4.18329471202108,4.24394544158511,5.9954538705107,6.55008503647143,3.86767897286937,8.22539827896026,6.61774257358547,6.02856372613096 | |phase1_expression=1.28119077683835,0.348975407639361,1.81999695755814,0.60492842261366,1.00179145989269,0.671517087647559,1.16806320297763,0.645616617207881,0.985521055061667,0.70219357896598,0.513653904676515,0.957265907944037,1.19840510951844,0.437102012094987,2.6648780945253,0.404950534779652,0,1.10411757875383,1.64537320326887,2.97072756258621,2.21112554392781,2.18440092641948,1.30599894569468,1.91990907352088,1.14704640533585,0.57423196411502,0,1.29282739611533,2.09025761402011,0.504060259519861,0.443461021310609,0,0,0,1.1554064790051,0.664938581433969,0.204169356262369,1.67412652294763,1.5626706890476,1.57057123192139,0.588231488031014,1.36609096991689,0.971020706062307,3.02152363141385,3.75094645512204,2.56965453026354,9.38869613217647,4.36050312760893,4.17403747195497,6.41618666945135,5.87942970826523,7.18762821824858,0.838913030288682,2.17608642603403,2.01656279485478,2.82985379639542,4.01146815914259,7.73508138416164,3.43937983461316,5.28990979272033,1.26766280701236,5.08266798103698,5.33576877666684,2.6996991518442,6.92206453796882,5.6838409195688,7.49000276296012,15.7529505181837,1.97010263386108,3.24014251996058,1.68259969081106,7.42692559449889,6.40518768759679,2.20483438586917,1.91690942036473,0.919218786610021,5.50579404996943,5.87361755191863,6.29786786350598,2.37395317914349,4.39140689291566,3.64639359389732,5.862842979029,8.4414391504752,8.09830713217094,8.54422897873636,6.26435395516053,4.10078780815661,1.59025005999687,1.43585964202892,1.73918693221007,6.0229671388697,0.679971333707751,3.77792234146472,3.24888208723835,0.896053774194671,1.96622188184453,5.11290967734173,4.93593408745451,6.00677276667578,1.12674735821344,3.84979432242953,0,7.11066703153331,5.62876706629157,3.04031838570118,4.54972000513305,1.82694207550496,1.03575153458869,2.67195850316685,6.24547176358089,3.65358573974569,2.99800146432876,4.6724018571313,5.87943535678524,2.63899841792318,2.47194967734374,5.63937491987655,1.76922110389975,3.558870698843,1.32504911076236,1.45462575940567,0,2.34224637609238,3.14170060220183,1.02182822083437,1.67741174308288,2.39961092397363,1.39777249780371,3.14560342750128,2.74500361691176,2.01046963380583,2.43354048269187,3.3243009452943,5.194701113989,3.24482526135515,2.85150218780886,2.23932547098167,1.76905930903572,1.89397670297827,1.56144531555244,2.75882525320168,1.44049703844279,2.86339153887859,2.10913147369116,1.5373646434182,2.34254311399322,2.84573707812917,1.72454394346274,2.45837904218165,1.93546236580344,5.2606975782618,2.50242524303038,2.43776516565517,4.7329891373827,3.18454826909589,0,1.02939162845886,1.42081749697796,0.828503090142008,2.34526059981096,2.52086886045421,1.89395788468168,2.36117078096885,3.39387648352232,2.79040733700489,3.21928081679543,2.91913355917924,3.12663714835613,2.62667942526552,2.1888578577381,1.60819986167866,0.878200461164203,1.74468344388483,2.94405927989778,2.36680608472354,0.991256348951394,1.05780226665418,1.06644125267617,5.10920678092965,2.31961430379768,2.21851877085677,2.44615848229357,1.33157938278791,1.42358718463353,1.31759163779209,1.75934646160189,1.1937388322469,1.36474860983384,1.79763881730844,1.72910439899755,1.1948476395262,3.79335801906163,1.82797620175566,2.25415471346161,3.46207257337034,1.93952487167626,1.82353131714828,1.7706230394792,1.62371162777562,1.41298855057237,0.493588655687202,1.77871576252289,1.16791574001266,0.393117990226406,0.674586337154561,1.01430060694251,2.17059443777175,1.78238096246994,2.30156909960649,1.78348749452539,1.37280706594041,11.5014565221884,0.372140947668503,0.624075346229121,0.505157755894224,1.79397413521912,1.4473305640901,1.66277871149944,2.65287976478679,3.09633455239849,4.2436271443797,2.11221223459652,3.01511263395268,4.04674189506223,2.92700471786698,2.04925687338048,1.99318220683897,2.07291199254733,1.63863314715738,2.93564469172023,0.867894351489069,6.03165135757089,4.89515115436839,1.96705709207614,1.65562047782839,5.77982123956051,5.15731421005694,2.95082901678016,4.79694761688309,3.15508219416257,3.51394869866975,3.66219776145758,4.54040716109849,4.67877215573028,5.09537755419898,5.26253912177363,4.67609372658099,3.16230222357219,2.24924921495265,1.27746076687442,4.62970569534864,1.95464351224291,1.31976098378028,0,5.09839335925461,2.72091201268276,2.07465587731488,6.496641643377,3.07435147943927,2.06742634534577,1.45413491791002,3.56497378384721,2.52829406348653,0,3.09406629744561,13.9580238359053,3.6012218806262,4.65691261617916,6.43011105094777,14.7192393923087,13.3776613201553,13.3284706687718,19.4857567433344,1.87737366450968,2.96564899209348,0.882113592219848,0.98931751764888,2.09903754704677,1.14594557363496,1.43246812803764,2.1338316966858,2.33184669303881,4.45020724825223,2.05045056957423,2.88941615148511,3.88908507476395,1.50694765603753,0.820165366326151,3.20289442489132,0.849892149969277,0.979660166265606,0.690999869022119,1.90934123603023,3.32152793260192,3.45643094115643,3.02414954301044,3.13632444021703,2.40198820120795,1.75323650300267,1.07449492442937,1.83229159388821,1.42576470620972,1.24267862617385,2.25477175473676,2.0932316446157,2.31641886639937,1.16670713006429,3.48731523389874,3.37912250981556,2.22978753426933,1.0416350787516,1.36317147753424,0.724752362478018,0.864090018773596,0.316011120628178,2.43270258348197,3.08132871494482,1.16928740680016,1.61124026100733,1.78813219303138,0.841368146639782,0.443068581523732,0.605798699688886,0.990688486514998,0.705783295957884,1.07203668813728,0.865906574762965,0.818138315270983,1.36038230169127,1.10992976687032,1.07656627931371,0.839423081820392,1.9318959403219,3.00291960721891,0.73260649706906,1.2862102744744,2.00628841614145,3.95326289831947,2.76195141904306,4.01026859407578,4.81188910562325,4.11049511862385,3.0215755895588,4.72515750162264,4.5032120322422,4.98456649882625,3.10656187051092,2.90604573235695,2.39414924040619,3.41467211508268,2.91728060481953,4.19226325255965,6.25067928730048,5.11167473943715,5.97501665992793,8.66481865897901,4.29585259998456,3.54871019846336,5.09291121742406,5.05664140337365,4.1616349063165,3.73330548211486,3.81034953026459,4.51948871184936,5.20854895252004,2.06042950401653,5.88795680537589,6.17164654293748,5.32427418478012,4.76872379894642,4.21504608233753,2.91739079287525,3.9768865709088,4.93905526756486,5.26139422875686,5.02475221229689,3.36685362994643,3.6776855618494,4.43270170690036,6.54769669071503,4.18329471202108,4.24394544158511,5.9954538705107,6.55008503647143,3.86767897286937,8.22539827896026,6.61774257358547,6.02856372613096 | ||
|short_description=p@chr2:174170893..174170952,+ | |short_description=p@chr2:174170893..174170952,+ | ||
}} | }} |
Latest revision as of 16:33, 4 August 2015
Short description: | p@chr2:174170893..174170952, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr2:174170893..174170952, + |
Coexpression cluster: | MCL_coexpression_mm9:989 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 4.10e-08 | 43 |
ectodermal cell | 1.41e-07 | 44 |
neurectodermal cell | 1.41e-07 | 44 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.09e-15 | 73 |
nervous system | 9.57e-15 | 75 |
regional part of nervous system | 9.26e-12 | 54 |
neural tube | 1.09e-10 | 52 |
neural rod | 1.09e-10 | 52 |
future spinal cord | 1.09e-10 | 52 |
neural keel | 1.09e-10 | 52 |
ectoderm-derived structure | 2.02e-09 | 95 |
ectoderm | 2.02e-09 | 95 |
presumptive ectoderm | 2.02e-09 | 95 |
neurectoderm | 3.36e-09 | 64 |
neural plate | 3.36e-09 | 64 |
presumptive neural plate | 3.36e-09 | 64 |
regional part of brain | 3.00e-08 | 46 |
structure with developmental contribution from neural crest | 3.50e-08 | 92 |
brain | 4.28e-08 | 47 |
future brain | 4.28e-08 | 47 |
anterior neural tube | 7.53e-07 | 40 |
regional part of forebrain | 8.81e-07 | 39 |
forebrain | 8.81e-07 | 39 |
future forebrain | 8.81e-07 | 39 |