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{{CL
{{CL
|id=CL:0000039
|name=germ line cell
|namespace=cell
|def="A cell that is within the developmental lineage of gametes and is able to pass along its genetic material to offspring." [GOC:tfm, ISBN:0721662544]
|xref=
|is_a=CL:0000144;;CL:0000548
|synonym=
|comment=Originally this term had some plant germ line cell children
|alt_id=
|alt_id=
|disjoint_from=
|comment=Originally this term had some plant germ line cell children.
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A cell that is within the developmental lineage of gametes and is able to pass along its genetic material to offspring." [GOC:tfm, ISBN:0721662544]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=CL:0002371
|has_quality=
|has_quality=
|id=CL:0000039
|is_a=CL:0000548
|is_obsolete=
|located_in=
|located_in=
|name=germ line cell
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|subset=
|synonym=
|union_of=
|xref=
}}
}}

Latest revision as of 16:28, 12 September 2014

Name:germ line cell
Namespace:FANTOM
Definition:"A cell that is within the developmental lineage of gametes and is able to pass along its genetic material to offspring." [GOC:tfm, ISBN:0721662544]
Comments:Originally this term had some plant germ line cell children.


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000548(animal cell)
disjoint_from:CL:0002371(somatic cell)



Children


is a:CL:0000586 (germ cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000039 (germ line cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.99e-171FFCP PHASE1:Hg19::chr12:7863680..7863695,+#_f5ddbd5f01922dd555fc619ff5088da7p3@DPPA3
1.99e-171FFCP PHASE2:Hg19::chr12:7863680..7863695,+#_f5ddbd5f01922dd555fc619ff5088da7p3@DPPA3
5.52e-144FFCP PHASE2:Hg19::chr4:165953147..165953161,+#_ee2a50ad21f60affac4ea971a18e56e6p3@TRIM60
5.52e-144FFCP PHASE1:Hg19::chr4:165953147..165953161,+#_ee2a50ad21f60affac4ea971a18e56e6p3@TRIM60
9.03e-144FFCP PHASE2:Hg19::chr21:45681768..45681773,-#_34ddb1a46a78b3b037afa03d11e67ac0p4@DNMT3L
9.03e-144FFCP PHASE1:Hg19::chr21:45681768..45681773,-#_34ddb1a46a78b3b037afa03d11e67ac0p4@DNMT3L
6.94e-140FFCP PHASE2:Hg19::chr12:8983864..8983875,-#_56a22ea39419e1816675849216fa5d2dp2@A2ML1-AS1
6.94e-140FFCP PHASE1:Hg19::chr12:8983864..8983875,-#_56a22ea39419e1816675849216fa5d2dp2@A2ML1-AS1
1.01e-125FFCP PHASE1:Hg19::chr12:7864063..7864074,+#_981352328cf8ede5c5b082353f4c15fep2@DPPA3
1.01e-125FFCP PHASE2:Hg19::chr12:7864063..7864074,+#_981352328cf8ede5c5b082353f4c15fep2@DPPA3
5.61e-117FFCP PHASE2:Hg19::chr12:8983894..8983910,-#_35c62b9368536839098c40bb05337131p1@A2ML1-AS1
5.61e-117FFCP PHASE1:Hg19::chr12:8983894..8983910,-#_35c62b9368536839098c40bb05337131p1@A2ML1-AS1
7.13e-117FFCP PHASE1:Hg19::chr4:165953174..165953189,+#_5ea2b86d0618f26a0b99ca8df95ebbdbp1@TRIM60
7.13e-117FFCP PHASE2:Hg19::chr4:165953174..165953189,+#_5ea2b86d0618f26a0b99ca8df95ebbdbp1@TRIM60
9.06e-117FFCP PHASE1:Hg19::chr4:165953213..165953229,+#_37d7d09edd9c83527bf8a691abb3a66bp2@TRIM60
9.06e-117FFCP PHASE2:Hg19::chr4:165953213..165953229,+#_37d7d09edd9c83527bf8a691abb3a66bp2@TRIM60
1.15e-116FFCP PHASE2:Hg19::chr3:9895464..9895477,-#_4864cab3dbe7b5efb883161b002b7dd8p@chr3:9895464..9895477, -
1.15e-116FFCP PHASE1:Hg19::chr3:9895464..9895477,-#_4864cab3dbe7b5efb883161b002b7dd8p@chr3:9895464..9895477, -
3.15e-112FFCP PHASE2:Hg19::chr1:227034858..227034868,+#_e189d3a5102b03ec5c716a3917bcdfb3p@chr1:227034858..227034868, +
3.15e-112FFCP PHASE2:Hg19::chr12:32717031..32717041,+#_e189d3a5102b03ec5c716a3917bcdfb3p@chr12:32717031..32717041, +
3.15e-112FFCP PHASE2:Hg19::chr16:24506473..24506474,-#_e189d3a5102b03ec5c716a3917bcdfb3p2@BX538205
3.15e-112FFCP PHASE2:Hg19::chr11:107782394..107782402,+#_e189d3a5102b03ec5c716a3917bcdfb3p@chr11:107782394..107782402, +
3.15e-112FFCP PHASE1:Hg19::chr19:40431284..40431296,-#_e189d3a5102b03ec5c716a3917bcdfb3p@chr19:40431284..40431296, -
3.15e-112FFCP PHASE2:Hg19::chr1:38709054..38709062,+#_e189d3a5102b03ec5c716a3917bcdfb3p@chr1:38709054..38709062, +
3.15e-112FFCP PHASE1:Hg19::chr2:71755206..71755213,+#_e189d3a5102b03ec5c716a3917bcdfb3p@chr2:71755206..71755213, +
3.15e-112FFCP PHASE1:Hg19::chr7:2309320..2309348,-#_e189d3a5102b03ec5c716a3917bcdfb3p@chr7:2309320..2309348, -
3.15e-112FFCP PHASE1:Hg19::chr21:27478934..27478945,-#_e189d3a5102b03ec5c716a3917bcdfb3p@chr21:27478934..27478945, -
3.15e-112FFCP PHASE1:Hg19::chr19:51883879..51883908,-#_e189d3a5102b03ec5c716a3917bcdfb3p@chr19:51883879..51883908, -
3.15e-112FFCP PHASE1:Hg19::chr8:133637642..133637653,-#_e189d3a5102b03ec5c716a3917bcdfb3p6@LRRC6
3.15e-112FFCP PHASE2:Hg19::chr1:92406327..92406341,+#_e189d3a5102b03ec5c716a3917bcdfb3p@chr1:92406327..92406341, +
3.15e-112FFCP PHASE2:Hg19::chr2:65786044..65786055,+#_e189d3a5102b03ec5c716a3917bcdfb3p@chr2:65786044..65786055, +
3.15e-112FFCP PHASE2:Hg19::chr12:32717043..32717051,+#_e189d3a5102b03ec5c716a3917bcdfb3p@chr12:32717043..32717051, +
3.15e-112FFCP PHASE1:Hg19::chr4:779349..779383,+#_e189d3a5102b03ec5c716a3917bcdfb3p@chr4:779349..779383, +
3.15e-112FFCP PHASE1:Hg19::chr2:233989556..233989568,+#_e189d3a5102b03ec5c716a3917bcdfb3p@chr2:233989556..233989568, +
3.15e-112FFCP PHASE2:Hg19::chr19:51883856..51883866,-#_e189d3a5102b03ec5c716a3917bcdfb3p@chr19:51883856..51883866, -
3.15e-112FFCP PHASE1:Hg19::chr16:24506473..24506474,-#_e189d3a5102b03ec5c716a3917bcdfb3p2@BX538205
3.15e-112FFCP PHASE1:Hg19::chr19:40431300..40431312,-#_e189d3a5102b03ec5c716a3917bcdfb3p@chr19:40431300..40431312, -
3.15e-112FFCP PHASE2:Hg19::chr8:133637624..133637635,-#_e189d3a5102b03ec5c716a3917bcdfb3p5@LRRC6
3.15e-112FFCP PHASE1:Hg19::chr2:71755221..71755234,+#_e189d3a5102b03ec5c716a3917bcdfb3p@chr2:71755221..71755234, +
3.15e-112FFCP PHASE1:Hg19::chr6:6032547..6032560,-#_e189d3a5102b03ec5c716a3917bcdfb3p@chr6:6032547..6032560, -
3.15e-112FFCP PHASE1:Hg19::chr21:27478988..27478996,-#_e189d3a5102b03ec5c716a3917bcdfb3p@chr21:27478988..27478996, -
3.15e-112FFCP PHASE1:Hg19::chr19:51883915..51883934,-#_e189d3a5102b03ec5c716a3917bcdfb3p@chr19:51883915..51883934, -
3.15e-112FFCP PHASE2:Hg19::chr19:40431284..40431296,-#_e189d3a5102b03ec5c716a3917bcdfb3p@chr19:40431284..40431296, -
3.15e-112FFCP PHASE2:Hg19::chr2:71755206..71755213,+#_e189d3a5102b03ec5c716a3917bcdfb3p@chr2:71755206..71755213, +
3.15e-112FFCP PHASE1:Hg19::chr16:9069001..9069012,-#_e189d3a5102b03ec5c716a3917bcdfb3p@chr16:9069001..9069012, -
3.15e-112FFCP PHASE2:Hg19::chr4:779349..779383,+#_e189d3a5102b03ec5c716a3917bcdfb3p@chr4:779349..779383, +
3.15e-112FFCP PHASE2:Hg19::chr2:233989556..233989568,+#_e189d3a5102b03ec5c716a3917bcdfb3p@chr2:233989556..233989568, +
3.15e-112FFCP PHASE2:Hg19::chr7:2309320..2309348,-#_e189d3a5102b03ec5c716a3917bcdfb3p@chr7:2309320..2309348, -
3.15e-112FFCP PHASE2:Hg19::chr21:27478934..27478945,-#_e189d3a5102b03ec5c716a3917bcdfb3p@chr21:27478934..27478945, -
3.15e-112FFCP PHASE1:Hg19::chr6:73935150..73935162,-#_e189d3a5102b03ec5c716a3917bcdfb3p3@KHDC1L
3.15e-112FFCP PHASE1:Hg19::chr19:46003056..46003067,+#_e189d3a5102b03ec5c716a3917bcdfb3p11@PPM1N
3.15e-112FFCP PHASE2:Hg19::chr19:51883879..51883908,-#_e189d3a5102b03ec5c716a3917bcdfb3p@chr19:51883879..51883908, -
3.15e-112FFCP PHASE2:Hg19::chr8:133637642..133637653,-#_e189d3a5102b03ec5c716a3917bcdfb3p6@LRRC6
3.15e-112FFCP PHASE1:Hg19::chr2:71755236..71755242,+#_e189d3a5102b03ec5c716a3917bcdfb3p@chr2:71755236..71755242, +
3.15e-112FFCP PHASE1:Hg19::chr1:24239991..24240012,-#_e189d3a5102b03ec5c716a3917bcdfb3p6@CNR2
3.15e-112FFCP PHASE2:Hg19::chr12:8045030..8045044,+#_e189d3a5102b03ec5c716a3917bcdfb3p5@NANOGP1
3.15e-112FFCP PHASE1:Hg19::chr10:48320905..48320918,+#_e189d3a5102b03ec5c716a3917bcdfb3p@chr10:48320905..48320918, +
3.15e-112FFCP PHASE1:Hg19::chr6:35511496..35511503,+#_e189d3a5102b03ec5c716a3917bcdfb3p@chr6:35511496..35511503, +
3.15e-112FFCP PHASE2:Hg19::chr19:40431300..40431312,-#_e189d3a5102b03ec5c716a3917bcdfb3p@chr19:40431300..40431312, -
3.15e-112FFCP PHASE2:Hg19::chr15:33905298..33905312,+#_e189d3a5102b03ec5c716a3917bcdfb3p@chr15:33905298..33905312, +
3.15e-112FFCP PHASE2:Hg19::chr2:71755221..71755234,+#_e189d3a5102b03ec5c716a3917bcdfb3p@chr2:71755221..71755234, +
3.15e-112FFCP PHASE2:Hg19::chr6:6032547..6032560,-#_e189d3a5102b03ec5c716a3917bcdfb3p@chr6:6032547..6032560, -
3.15e-112FFCP PHASE2:Hg19::chr19:46003056..46003067,+#_e189d3a5102b03ec5c716a3917bcdfb3p11@PPM1N
3.15e-112FFCP PHASE1:Hg19::chr11:107782394..107782402,+#_e189d3a5102b03ec5c716a3917bcdfb3p@chr11:107782394..107782402, +
3.15e-112FFCP PHASE2:Hg19::chr21:27478988..27478996,-#_e189d3a5102b03ec5c716a3917bcdfb3p@chr21:27478988..27478996, -
3.15e-112FFCP PHASE2:Hg19::chr19:51883915..51883934,-#_e189d3a5102b03ec5c716a3917bcdfb3p@chr19:51883915..51883934, -
3.15e-112FFCP PHASE1:Hg19::chr1:38709054..38709062,+#_e189d3a5102b03ec5c716a3917bcdfb3p@chr1:38709054..38709062, +
3.15e-112FFCP PHASE2:Hg19::chr10:48320905..48320918,+#_e189d3a5102b03ec5c716a3917bcdfb3p@chr10:48320905..48320918, +
3.15e-112FFCP PHASE2:Hg19::chr6:35511496..35511503,+#_e189d3a5102b03ec5c716a3917bcdfb3p@chr6:35511496..35511503, +
3.15e-112FFCP PHASE2:Hg19::chr16:9069001..9069012,-#_e189d3a5102b03ec5c716a3917bcdfb3p@chr16:9069001..9069012, -
3.15e-112FFCP PHASE1:Hg19::chr12:32717031..32717041,+#_e189d3a5102b03ec5c716a3917bcdfb3p@chr12:32717031..32717041, +
3.15e-112FFCP PHASE1:Hg19::chr1:227034858..227034868,+#_e189d3a5102b03ec5c716a3917bcdfb3p@chr1:227034858..227034868, +
3.15e-112FFCP PHASE2:Hg19::chr6:73935150..73935162,-#_e189d3a5102b03ec5c716a3917bcdfb3p3@KHDC1L
3.15e-112FFCP PHASE2:Hg19::chr2:71755236..71755242,+#_e189d3a5102b03ec5c716a3917bcdfb3p@chr2:71755236..71755242, +
3.15e-112FFCP PHASE2:Hg19::chr1:24239991..24240012,-#_e189d3a5102b03ec5c716a3917bcdfb3p6@CNR2
3.15e-112FFCP PHASE1:Hg19::chr12:8045030..8045044,+#_e189d3a5102b03ec5c716a3917bcdfb3p5@NANOGP1
3.15e-112FFCP PHASE1:Hg19::chr15:33905298..33905312,+#_e189d3a5102b03ec5c716a3917bcdfb3p@chr15:33905298..33905312, +
3.15e-112FFCP PHASE1:Hg19::chr1:92406327..92406341,+#_e189d3a5102b03ec5c716a3917bcdfb3p@chr1:92406327..92406341, +
3.15e-112FFCP PHASE1:Hg19::chr2:65786044..65786055,+#_e189d3a5102b03ec5c716a3917bcdfb3p@chr2:65786044..65786055, +
3.15e-112FFCP PHASE1:Hg19::chr19:51883856..51883866,-#_e189d3a5102b03ec5c716a3917bcdfb3p@chr19:51883856..51883866, -
3.15e-112FFCP PHASE1:Hg19::chr8:133637624..133637635,-#_e189d3a5102b03ec5c716a3917bcdfb3p5@LRRC6
3.15e-112FFCP PHASE1:Hg19::chr12:32717043..32717051,+#_e189d3a5102b03ec5c716a3917bcdfb3p@chr12:32717043..32717051, +
3.67e-112FFCP PHASE1:Hg19::chr6:35511483..35511494,+#_bafed7280364dc6dfe954461cc10eaeep@chr6:35511483..35511494, +
3.67e-112FFCP PHASE2:Hg19::chr6:35511483..35511494,+#_bafed7280364dc6dfe954461cc10eaeep@chr6:35511483..35511494, +
1.28e-101FFCP PHASE2:Hg19::chr21:45681737..45681760,-#_63ed83ff43a2e64e8e5d052e457f9d55p2@DNMT3L
1.28e-101FFCP PHASE1:Hg19::chr21:45681737..45681760,-#_63ed83ff43a2e64e8e5d052e457f9d55p2@DNMT3L
4.29e-101FFCP PHASE1:Hg19::chr19:46002982..46002998,+#_0f336ef5a999fd0701d5f0e67f8d9347p8@PPM1N
4.29e-101FFCP PHASE2:Hg19::chr19:46002982..46002998,+#_0f336ef5a999fd0701d5f0e67f8d9347p8@PPM1N
7.2e-101FFCP PHASE1:Hg19::chr4:188963120..188963125,+#_3834d02c192979a87b32db29697ca84bp@chr4:188963120..188963125, +
7.2e-101FFCP PHASE2:Hg19::chr4:188963120..188963125,+#_3834d02c192979a87b32db29697ca84bp@chr4:188963120..188963125, +
5.5e-100FFCP PHASE2:Hg19::chr3:48519267..48519301,-#_195953145860714a3a3d191bee35f913p@chr3:48519267..48519301, -
5.5e-100FFCP PHASE1:Hg19::chr3:48519267..48519301,-#_195953145860714a3a3d191bee35f913p@chr3:48519267..48519301, -
1.18e-92FFCP PHASE1:Hg19::chr21:45681774..45681821,-#_d88ebef04cb2240edd2ba1c20a3a7733p1@DNMT3L
1.18e-92FFCP PHASE2:Hg19::chr21:45681774..45681821,-#_d88ebef04cb2240edd2ba1c20a3a7733p1@DNMT3L
3.52e-90FFCP PHASE2:Hg19::chr1:10476999..10477027,+#_856c57be9298599f5237ced41dd0e5ecp@chr1:10476999..10477027, +
3.52e-90FFCP PHASE1:Hg19::chr11:19838901..19838948,+#_856c57be9298599f5237ced41dd0e5ecp@chr11:19838901..19838948, +
3.52e-90FFCP PHASE1:Hg19::chr4:3931902..3931913,+#_856c57be9298599f5237ced41dd0e5ecp@chr4:3931902..3931913, +
3.52e-90FFCP PHASE2:Hg19::chr3:47297118..47297149,+#_856c57be9298599f5237ced41dd0e5ecp@chr3:47297118..47297149, +
3.52e-90FFCP PHASE2:Hg19::chr7:5447185..5447197,-#_856c57be9298599f5237ced41dd0e5ecp23@TNRC18
3.52e-90FFCP PHASE1:Hg19::chr1:27385778..27385789,+#_856c57be9298599f5237ced41dd0e5ecp@chr1:27385778..27385789, +

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