CL:0000003: Difference between revisions
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{{CL | {{CL | ||
|alt_id= | |alt_id= | ||
| | |comment=To accommodate unicellular organisms better, 'cell in vivo' has been re-labeled 'native cell' to better represent its intended meaning - that is, that it is a cell in the context of a multicellular organism or in a natural environment. 'Native' is intended to contrast with 'in vitro', which refers to cells or other biological entities that have been intentionally placed in a controlled, non-natural setting for the purpose of study or manipulation. (MAH 1.12.12). | ||
|created_by= | |created_by= | ||
| | |def="A cell that is found in a natural setting, which includes multicellular organism cells 'in vivo' (i.e. part of an organism), and unicellular organisms 'in environment' (i.e. part of a natural environment)." [CARO:mah] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=CL:0000003 | |||
|is_a=CL:0000000 ;;GO:0005623 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=native cell | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of= | |part_of= | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | |||
|subset= | |||
|synonym="cell in vivo" NARROW [] | |||
|union_of= | |||
|xref=CARO:0000013 | |||
}} | }} | ||
Latest revision as of 16:27, 12 September 2014
| Name: | native cell | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "A cell that is found in a natural setting, which includes multicellular organism cells 'in vivo' (i.e. part of an organism), and unicellular organisms 'in environment' (i.e. part of a natural environment)." [CARO:mah] | ||
| Xrefs: |
| ||
| Synonyms: | "cell in vivo" NARROW [] | ||
| Comments: | To accommodate unicellular organisms better, 'cell in vivo' has been re-labeled 'native cell' to better represent its intended meaning - that is, that it is a cell in the context of a multicellular organism or in a natural environment. 'Native' is intended to contrast with 'in vitro', which refers to cells or other biological entities that have been intentionally placed in a controlled, non-natural setting for the purpose of study or manipulation. (MAH 1.12.12). |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000000(cell),GO:0005623(cell) |
|---|
Children
| is a: | CL:0000034 (stem cell),CL:0000055 (non-terminally differentiated cell),CL:0000064 (ciliated cell),CL:0000151 (secretory cell),CL:0000181 (metabolising cell),CL:0000183 (contractile cell),CL:0000197 (receptor cell),CL:0000211 (electrically active cell),CL:0000212 (absorptive cell),CL:0000215 (barrier cell),CL:0000219 (motile cell),CL:0000255 (eukaryotic cell),CL:0000325 (stuff accumulating cell),CL:0000412 (polyploid cell),CL:0000473 (defensive cell),CL:0000627 (transporting cell),CL:0000630 (supportive cell),CL:0000668 (parenchymal cell),CL:0002242 (nucleate cell),CL:0002371 (somatic cell),CL:0007004 (premigratory neural crest cell),CL:2000021 (sebaceous gland native cell) |
|---|---|
| derives from: | FF:0000002 (in vivo cell sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 10150-102I6 (medial frontal gyrus, adult, donor10252)
- 10151-102I7 (amygdala, adult, donor10252)
- 10153-102I9 (hippocampus, adult, donor10252)
- 10154-103A1 (thalamus, adult, donor10252)
- 10155-103A2 (medulla oblongata, adult, donor10252)
- 10157-103A4 (parietal lobe, adult, donor10252)
- 10158-103A5 (substantia nigra, adult, donor10252)
- 10159-103A6 (spinal cord, adult, donor10252)
- 10160-103A7 (pineal gland, adult, donor10252)
- 10161-103A8 (globus pallidus, adult, donor10252)
... further results Mouse (Mus musculus)
- 10150-102I6 (medial frontal gyrus, adult, donor10252)
- 10151-102I7 (amygdala, adult, donor10252)
- 10153-102I9 (hippocampus, adult, donor10252)
- 10154-103A1 (thalamus, adult, donor10252)
- 10155-103A2 (medulla oblongata, adult, donor10252)
- 10157-103A4 (parietal lobe, adult, donor10252)
- 10158-103A5 (substantia nigra, adult, donor10252)
- 10159-103A6 (spinal cord, adult, donor10252)
- 10160-103A7 (pineal gland, adult, donor10252)
- 10161-103A8 (globus pallidus, adult, donor10252)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000003 (native cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
No analysis results for this cluster
