FFCP PHASE1:Hg19::chr12:12605695..12605708,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr12:12605695..12605708,+ | |||
|coexpression_cluster_id=C432 | |||
|description=CAGE_peak_at_chr12:12605695..12605708,+ | |description=CAGE_peak_at_chr12:12605695..12605708,+ | ||
|id=chr12:12605695..12605708,+ | |id=chr12:12605695..12605708,+ | ||
|ontology_enrichment_celltype=CL:0002057!1.55e-48!42;CL:0000860!3.28e-45!45;CL:0002194!2.26e-31!63;CL:0000576!2.26e-31!63;CL:0000040!2.26e-31!63;CL:0000559!2.26e-31!63;CL:0002009!2.23e-30!65;CL:0000839!3.89e-28!70;CL:0000557!1.00e-27!71;CL:0000766!7.89e-26!76;CL:0002087!1.22e-21!119;CL:0000738!3.64e-18!140;CL:0002031!6.46e-18!124;CL:0000763!4.12e-17!112;CL:0000049!4.12e-17!112;CL:0000037!1.75e-14!172;CL:0000566!1.75e-14!172;CL:0000988!1.35e-13!182;CL:0002032!4.52e-13!165;CL:0000837!4.52e-13!165 | |ontology_enrichment_celltype=CL:0002057!1.55e-48!42;CL:0000860!3.28e-45!45;CL:0002194!2.26e-31!63;CL:0000576!2.26e-31!63;CL:0000040!2.26e-31!63;CL:0000559!2.26e-31!63;CL:0002009!2.23e-30!65;CL:0000839!3.89e-28!70;CL:0000557!1.00e-27!71;CL:0000766!7.89e-26!76;CL:0002087!1.22e-21!119;CL:0000738!3.64e-18!140;CL:0002031!6.46e-18!124;CL:0000763!4.12e-17!112;CL:0000049!4.12e-17!112;CL:0000037!1.75e-14!172;CL:0000566!1.75e-14!172;CL:0000988!1.35e-13!182;CL:0002032!4.52e-13!165;CL:0000837!4.52e-13!165 | ||
|ontology_enrichment_celltype_v019=CL:0000860;2.60e-53;33!CL:0002057;2.60e-53;33!CL:0000473;1.93e-36;39!CL:0000234;1.93e-36;39!CL:0000576;8.09e-23;48!CL:0000766;1.05e-17;69!CL:0002087;3.91e-12;104!CL:0000763;7.40e-10;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.65e-46,42;CL:0002057,1.65e-46,42;CL:0000473,1.12e-40,48;CL:0000234,1.12e-40,48;CL:0002194,1.68e-32,59;CL:0000576,1.68e-32,59;CL:0000040,1.68e-32,59;CL:0000559,1.68e-32,59;CL:0002009,1.91e-31,61;CL:0000839,4.41e-29,66;CL:0000557,1.19e-28,67;CL:0000766,1.14e-26,72;CL:0000763,9.38e-18,108;CL:0000049,9.38e-18,108;CL:0002087,1.17e-16,115;CL:0002031,5.91e-16,120;CL:0000738,4.83e-14,136;CL:0002032,8.36e-12,161;CL:0000837,8.36e-12,161;CL:0000037,2.70e-11,168;CL:0000988,1.07e-10,177 | |||
|ontology_enrichment_development_v019=CL:0002057;8.41e-31;42!CL:0000049;2.37e-07;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!1.76e-24!80;UBERON:0001474!1.09e-22!86;UBERON:0002390!4.70e-22!102;UBERON:0003061!4.70e-22!102;UBERON:0002193!5.85e-20!112;UBERON:0004765!3.98e-19!101;UBERON:0001434!3.98e-19!101;UBERON:0002405!1.25e-16!115;UBERON:0002204!5.66e-11!167;UBERON:0003081!1.46e-09!216 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,2.86e-25,76;UBERON:0001474,2.01e-23,82;UBERON:0004765,2.46e-21,90;UBERON:0002405,1.21e-20,93;UBERON:0002390,1.39e-19,98;UBERON:0003061,1.39e-19,98;UBERON:0001434,3.44e-19,100;UBERON:0002193,9.38e-18,108;UBERON:0002204,2.30e-11,167;UBERON:0003081,2.88e-09,203 | |||
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|short_description=p@chr12:12605695..12605708,+ | |short_description=p@chr12:12605695..12605708,+ | ||
}} | }} |
Latest revision as of 06:32, 24 July 2015
Short description: | p@chr12:12605695..12605708, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:12605695..12605708, + |
Coexpression cluster: | C432_CD14_choriocarcinoma_Peripheral_CD34_Mast_Fibroblast_granulocyte |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.65e-46 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.65e-46 | 42 |
defensive cell | 1.12e-40 | 48 |
phagocyte | 1.12e-40 | 48 |
monopoietic cell | 1.68e-32 | 59 |
monocyte | 1.68e-32 | 59 |
monoblast | 1.68e-32 | 59 |
promonocyte | 1.68e-32 | 59 |
macrophage dendritic cell progenitor | 1.91e-31 | 61 |
myeloid lineage restricted progenitor cell | 4.41e-29 | 66 |
granulocyte monocyte progenitor cell | 1.19e-28 | 67 |
myeloid leukocyte | 1.14e-26 | 72 |
myeloid cell | 9.38e-18 | 108 |
common myeloid progenitor | 9.38e-18 | 108 |
nongranular leukocyte | 1.17e-16 | 115 |
hematopoietic lineage restricted progenitor cell | 5.91e-16 | 120 |
leukocyte | 4.83e-14 | 136 |
hematopoietic oligopotent progenitor cell | 8.36e-12 | 161 |
hematopoietic multipotent progenitor cell | 8.36e-12 | 161 |
hematopoietic stem cell | 2.70e-11 | 168 |
hematopoietic cell | 1.07e-10 | 177 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 2.86e-25 | 76 |
bone element | 2.01e-23 | 82 |
skeletal element | 2.46e-21 | 90 |
immune system | 1.21e-20 | 93 |
hematopoietic system | 1.39e-19 | 98 |
blood island | 1.39e-19 | 98 |
skeletal system | 3.44e-19 | 100 |
hemolymphoid system | 9.38e-18 | 108 |
musculoskeletal system | 2.30e-11 | 167 |
lateral plate mesoderm | 2.88e-09 | 203 |