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{{DOID
{{DOID
|id=DOID:3620
|alt_id=DOID:0060093;;DOID:1318
|name=central nervous system cancer
|namespace=
|def="A nervous system cancer that is located_in the central nervous system." [url:http\://en.wikipedia.org/wiki/Central_nervous_system]
|xref=
|is_a=DOID:3093
|synonym="central nervous system cancer" EXACT [];;"central nervous system tumor" EXACT [];;"central nervous system tumors" EXACT [NCI2004_11_17:C9293];;"CNS neoplasm" EXACT [CSP2005:2012-5421];;"malignant neoplasm of central nervous system (disorder)" EXACT [SNOMEDCT_2005_07_31:372062007];;"malignant neoplasm of central nervous system NOS" EXACT [MTHICD9_2006:192.9];;"malignant neoplasm of central nervous system, NOS" EXACT [SNOMEDCT_2005_07_31:93744007];;"malignant neoplasm of central nervous system, unspecified (disorder)" EXACT [SNOMEDCT_2005_07_31:190135002];;"malignant tumor of CNS" EXACT [NCI2004_11_17:C4627];;"neoplasm of central nervous system (disorder)" EXACT [SNOMEDCT_2005_07_31:126951006]
|comment=
|comment=
|alt_id=DOID:0060093;;DOID:1318
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A nervous system cancer that is located_in the central nervous system." [url:http://en.wikipedia.org/wiki/Central_nervous_system]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=DOID:3620
|is_a=DOID:3093
|is_obsolete=
|located_in=
|located_in=
|name=central nervous system cancer
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|subset=
|synonym="central nervous system cancer" EXACT [];;"central nervous system tumor" EXACT [];;"central nervous system tumors" EXACT [NCI2004_11_17:C9293];;"CNS neoplasm" EXACT [CSP2005:2012-5421];;"malignant neoplasm of central nervous system (disorder)" EXACT [SNOMEDCT_2005_07_31:372062007];;"malignant neoplasm of central nervous system NOS" EXACT [MTHICD9_2006:192.9];;"malignant neoplasm of central nervous system, NOS" EXACT [SNOMEDCT_2005_07_31:93744007];;"malignant neoplasm of central nervous system, unspecified (disorder)" EXACT [SNOMEDCT_2005_07_31:190135002];;"malignant tumor of CNS" EXACT [NCI2004_11_17:C4627];;"neoplasm of central nervous system (disorder)" EXACT [SNOMEDCT_2005_07_31:126951006]
|union_of=
|xref=MSH:D016543;;NCI:C9293;;SNOMEDCT_2010_1_31:126951006;;SNOMEDCT_2010_1_31:190135002;;SNOMEDCT_2010_1_31:372062007;;SNOMEDCT_2010_1_31:93744007;;UMLS_CUI:C0085136;;UMLS_CUI:C0348374
}}
}}

Latest revision as of 16:51, 12 September 2014

Name:central nervous system cancer
Namespace:FANTOM
Definition:"A nervous system cancer that is located_in the central nervous system." [url:http://en.wikipedia.org/wiki/Central_nervous_system]
Xrefs:
links:

MSH:D016543
NCI:C9293
SNOMEDCT_2010_1_31:126951006
SNOMEDCT_2010_1_31:190135002
SNOMEDCT_2010_1_31:372062007
SNOMEDCT_2010_1_31:93744007
UMLS_CUI:C0085136

UMLS_CUI:C0348374
Synonyms: "central nervous system cancer" EXACT []
"central nervous system tumor" EXACT []
"central nervous system tumors" EXACT [NCI2004_11_17:C9293]
"CNS neoplasm" EXACT [CSP2005:2012-5421]
"malignant neoplasm of central nervous system (disorder)" EXACT [SNOMEDCT_2005_07_31:372062007]
"malignant neoplasm of central nervous system NOS" EXACT [MTHICD9_2006:192.9]
"malignant neoplasm of central nervous system, NOS" EXACT [SNOMEDCT_2005_07_31:93744007]
"malignant neoplasm of central nervous system, unspecified (disorder)" EXACT [SNOMEDCT_2005_07_31:190135002]
"malignant tumor of CNS" EXACT [NCI2004_11_17:C4627]
"neoplasm of central nervous system (disorder)" EXACT [SNOMEDCT_2005_07_31:126951006]
Alt_id: DOID:0060093
DOID:1318

Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:DOID:3093(nervous system cancer)



Children


is a:DOID:1319 (brain cancer),DOID:3565 (meningioma)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

Mouse (Mus musculus)

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:3620 (central nervous system cancer), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr10:45295885..45295915,-#_65204098875bac0ffc0040b979d80a87p@chr10:45295885..45295915, -
5.42e-195FFCP PHASE2:Hg19::chr10:45295885..45295915,-#_65204098875bac0ffc0040b979d80a87p@chr10:45295885..45295915, -
9.37e-99FFCP PHASE2:Hg19::chr12:12094754..12094758,+#_37559503d33923695d0abf7bf2a7f412p@chr12:12094754..12094758, +
9.37e-99FFCP PHASE1:Hg19::chr12:12094754..12094758,+#_37559503d33923695d0abf7bf2a7f412p@chr12:12094754..12094758, +
1.23e-66FFCP PHASE2:Hg19::chr2:235107734..235107745,-#_862a5a5a572fb0256fc09a21a9ff1a51p@chr2:235107734..235107745, -
1.23e-66FFCP PHASE1:Hg19::chr2:235107734..235107745,-#_862a5a5a572fb0256fc09a21a9ff1a51p@chr2:235107734..235107745, -
2.39e-66FFCP PHASE1:Hg19::chr2:135170027..135170035,+#_418dd607d353e64b34e2a2c64340eedfp@chr2:135170027..135170035, +
2.39e-66FFCP PHASE2:Hg19::chr2:135170027..135170035,+#_418dd607d353e64b34e2a2c64340eedfp@chr2:135170027..135170035, +
4.66e-66FFCP PHASE1:Hg19::chr1:8251750..8251759,+#_51d642656fcff20b23cc1ea692582b02p@chr1:8251750..8251759, +
4.66e-66FFCP PHASE2:Hg19::chr1:8251750..8251759,+#_51d642656fcff20b23cc1ea692582b02p@chr1:8251750..8251759, +
1.46e-50FFCP PHASE2:Hg19::chr5:174151841..174151852,+#_510eade7e545c6f7a607f9d25754bab7p7@MSX2
1.46e-50FFCP PHASE1:Hg19::chr12:31158902..31158914,-#_510eade7e545c6f7a607f9d25754bab7p2@ENST00000544329
1.46e-50FFCP PHASE1:Hg19::chr2:113668763..113668773,+#_510eade7e545c6f7a607f9d25754bab7p@chr2:113668763..113668773, +
1.46e-50FFCP PHASE2:Hg19::chr2:113668763..113668773,+#_510eade7e545c6f7a607f9d25754bab7p@chr2:113668763..113668773, +
1.46e-50FFCP PHASE2:Hg19::chr12:31158902..31158914,-#_510eade7e545c6f7a607f9d25754bab7p2@ENST00000544329
1.46e-50FFCP PHASE1:Hg19::chr5:174151841..174151852,+#_510eade7e545c6f7a607f9d25754bab7p7@MSX2
2.42e-50FFCP PHASE1:Hg19::chr12:52698999..52699008,+#_0ac265f72436437862538dcb1574eb65p@chr12:52698999..52699008, +
2.42e-50FFCP PHASE2:Hg19::chr12:52698999..52699008,+#_0ac265f72436437862538dcb1574eb65p@chr12:52698999..52699008, +
6.62e-41FFCP PHASE1:Hg19::chr7:142563227..142563251,+#_501d5e9806149855bdcc616bf977b23bp@chr7:142563227..142563251, +
6.62e-41FFCP PHASE2:Hg19::chr7:142563227..142563251,+#_501d5e9806149855bdcc616bf977b23bp@chr7:142563227..142563251, +
9.91e-41FFCP PHASE1:Hg19::chr16:86612112..86612123,+#_2dd57dcb9cde0b48c81d8b6489141c80p5@FOXL1
9.91e-41FFCP PHASE2:Hg19::chr16:86612112..86612123,+#_2dd57dcb9cde0b48c81d8b6489141c80p5@FOXL1
1.48e-40FFCP PHASE1:Hg19::chr12:52679917..52679933,-#_5fc7338504f317518313971c755b990ap@chr12:52679917..52679933, -
1.48e-40FFCP PHASE2:Hg19::chr12:52679917..52679933,-#_5fc7338504f317518313971c755b990ap@chr12:52679917..52679933, -
2.21e-40FFCP PHASE2:Hg19::chr19:41447981..41448001,+#_df3c498ad70cb269b2356a8521a4f05fp@chr19:41447981..41448001, +
2.21e-40FFCP PHASE1:Hg19::chr17:22069559..22069568,-#_df3c498ad70cb269b2356a8521a4f05fp@chr17:22069559..22069568, -
2.21e-40FFCP PHASE2:Hg19::chr17:22069559..22069568,-#_df3c498ad70cb269b2356a8521a4f05fp@chr17:22069559..22069568, -
2.21e-40FFCP PHASE1:Hg19::chr19:41447981..41448001,+#_df3c498ad70cb269b2356a8521a4f05fp@chr19:41447981..41448001, +
2.58e-34FFCP PHASE1:Hg19::chr15:69339407..69339410,+#_9e4b416be53468bbad968d256353e61cp3@NOX5
2.58e-34FFCP PHASE2:Hg19::chr15:69339407..69339410,+#_9e4b416be53468bbad968d256353e61cp3@NOX5
3.61e-34FFCP PHASE1:Hg19::chr16:83033869..83033872,+#_23a0422a2d41127ccaa8639edd22a6d6p@chr16:83033869..83033872, +
3.61e-34FFCP PHASE2:Hg19::chr16:83033869..83033872,+#_23a0422a2d41127ccaa8639edd22a6d6p@chr16:83033869..83033872, +
5.05e-34FFCP PHASE1:Hg19::chr2:113562551..113562554,-#_81fb8d09a72196733ed42c31325b9034p@chr2:113562551..113562554, -
5.05e-34FFCP PHASE2:Hg19::chr2:113562551..113562554,-#_81fb8d09a72196733ed42c31325b9034p@chr2:113562551..113562554, -
7.06e-34FFCP PHASE1:Hg19::chr20:50245629..50245639,-#_d4ecf675d5d39e0853fe1398bf08b7b6p@chr20:50245629..50245639, -
7.06e-34FFCP PHASE2:Hg19::chr20:50245629..50245639,-#_d4ecf675d5d39e0853fe1398bf08b7b6p@chr20:50245629..50245639, -
7.06e-34FFCP PHASE1:Hg19::chr18:60262589..60262593,+#_d4ecf675d5d39e0853fe1398bf08b7b6p@chr18:60262589..60262593, +
7.06e-34FFCP PHASE2:Hg19::chr18:60262589..60262593,+#_d4ecf675d5d39e0853fe1398bf08b7b6p@chr18:60262589..60262593, +
7.06e-34FFCP PHASE1:Hg19::chr7:3284005..3284016,-#_d4ecf675d5d39e0853fe1398bf08b7b6p@chr7:3284005..3284016, -
7.06e-34FFCP PHASE2:Hg19::chr7:3284005..3284016,-#_d4ecf675d5d39e0853fe1398bf08b7b6p@chr7:3284005..3284016, -
7.06e-34FFCP PHASE1:Hg19::chr17:30059110..30059117,+#_d4ecf675d5d39e0853fe1398bf08b7b6p@chr17:30059110..30059117, +
7.06e-34FFCP PHASE2:Hg19::chr17:30059110..30059117,+#_d4ecf675d5d39e0853fe1398bf08b7b6p@chr17:30059110..30059117, +
9.85e-34FFCP PHASE1:Hg19::chr9:127635073..127635077,+#_f3e221728f6fbfa7c7fbe74176218c88p7@ARPC5L
9.85e-34FFCP PHASE2:Hg19::chr9:127635073..127635077,+#_f3e221728f6fbfa7c7fbe74176218c88p7@ARPC5L
7.48e-30FFCP PHASE1:Hg19::chr22:33265699..33265702,+#_b204f6d796ec8d8de7e3ad58f65c06f4p@chr22:33265699..33265702, +
7.48e-30FFCP PHASE2:Hg19::chr22:33265699..33265702,+#_b204f6d796ec8d8de7e3ad58f65c06f4p@chr22:33265699..33265702, +
9.99e-30FFCP PHASE1:Hg19::chr16:83371254..83371258,+#_424b1a1ad7346315772c7209367a2c2dp@chr16:83371254..83371258, +
9.99e-30FFCP PHASE2:Hg19::chr16:83371254..83371258,+#_424b1a1ad7346315772c7209367a2c2dp@chr16:83371254..83371258, +
2.37e-29FFCP PHASE1:Hg19::chr5:1882184..1882203,-#_b3837e0c908f305deaeab629cc46b746p4@IRX4
2.37e-29FFCP PHASE2:Hg19::chr5:1882184..1882203,-#_b3837e0c908f305deaeab629cc46b746p4@IRX4
3.16e-29FFCP PHASE1:Hg19::chr19:28936188..28936202,+#_0c1bff60fe0ad9dc3741eb1f735b526ep@chr19:28936188..28936202, +
3.16e-29FFCP PHASE2:Hg19::chr19:28936188..28936202,+#_0c1bff60fe0ad9dc3741eb1f735b526ep@chr19:28936188..28936202, +
4.2e-29FFCP PHASE1:Hg19::chr21:43771226..43771242,-#_bc8a612ff08196937d968d312b22ed22p3@TFF2
4.2e-29FFCP PHASE2:Hg19::chr21:43771226..43771242,-#_bc8a612ff08196937d968d312b22ed22p3@TFF2
2.16e-26FFCP PHASE1:Hg19::chr6:31304866..31304870,-#_03a30d272c3b6339c0751b5858374f57p@chr6:31304866..31304870, -
2.16e-26FFCP PHASE2:Hg19::chr6:31304866..31304870,-#_03a30d272c3b6339c0751b5858374f57p@chr6:31304866..31304870, -
2.78e-26FFCP PHASE1:Hg19::chr20:49983328..49983340,+#_56f9da47528965e6c3e258f449af4061p@chr20:49983328..49983340, +
2.78e-26FFCP PHASE2:Hg19::chr20:49983328..49983340,+#_56f9da47528965e6c3e258f449af4061p@chr20:49983328..49983340, +
3.58e-26FFCP PHASE1:Hg19::chr11:121910956..121910960,-#_26be36b65c4b98e1e2255974d23deaffp@chr11:121910956..121910960, -
3.58e-26FFCP PHASE2:Hg19::chr11:121910956..121910960,-#_26be36b65c4b98e1e2255974d23deaffp@chr11:121910956..121910960, -
4.61e-26FFCP PHASE1:Hg19::chr9:21468453..21468457,-#_102ab3dae640fb4dade169c048aba35cp@chr9:21468453..21468457, -
4.61e-26FFCP PHASE2:Hg19::chr9:21468453..21468457,-#_102ab3dae640fb4dade169c048aba35cp@chr9:21468453..21468457, -
5.93e-26FFCP PHASE1:Hg19::chr1:91328490..91328494,-#_62618f0ab9fade36e54b2ae8b622ec98p@chr1:91328490..91328494, -
5.93e-26FFCP PHASE2:Hg19::chr1:91328490..91328494,-#_62618f0ab9fade36e54b2ae8b622ec98p@chr1:91328490..91328494, -
9.79e-26FFCP PHASE1:Hg19::chr11:10066159..10066186,-#_9d82803f24f4c37c9d438b7705113de2p3@SBF2
9.79e-26FFCP PHASE1:Hg19::chr6:31815396..31815402,+#_9d82803f24f4c37c9d438b7705113de2p@chr6:31815396..31815402, +
9.79e-26FFCP PHASE2:Hg19::chr6:31815396..31815402,+#_9d82803f24f4c37c9d438b7705113de2p@chr6:31815396..31815402, +
9.79e-26FFCP PHASE2:Hg19::chr11:10066159..10066186,-#_9d82803f24f4c37c9d438b7705113de2p3@SBF2
1.26e-25FFCP PHASE1:Hg19::chr2:135170403..135170416,+#_f4d6cac48ee70dafbc8df8599499744fp@chr2:135170403..135170416, +
1.26e-25FFCP PHASE2:Hg19::chr2:135170403..135170416,+#_f4d6cac48ee70dafbc8df8599499744fp@chr2:135170403..135170416, +
1.07e-23FFCP PHASE1:Hg19::chr7:142558870..142558879,-#_3cfbfc4f4941da23b78b281483b588f5p@chr7:142558870..142558879, -
1.07e-23FFCP PHASE2:Hg19::chr7:142558870..142558879,-#_3cfbfc4f4941da23b78b281483b588f5p@chr7:142558870..142558879, -
1.07e-23FFCP PHASE1:Hg19::chr14:65823553..65823594,+#_3cfbfc4f4941da23b78b281483b588f5p@chr14:65823553..65823594, +
1.07e-23FFCP PHASE2:Hg19::chr14:65823553..65823594,+#_3cfbfc4f4941da23b78b281483b588f5p@chr14:65823553..65823594, +
1.34e-23FFCP PHASE1:Hg19::chr14:102704175..102704202,-#_8346664c0a00e0d9a9c53e48029a00acp@chr14:102704175..102704202, -
1.34e-23FFCP PHASE2:Hg19::chr14:102704175..102704202,-#_8346664c0a00e0d9a9c53e48029a00acp@chr14:102704175..102704202, -
2.62e-23FFCP PHASE2:Hg19::chr11:1213314..1213323,+#_e7177bdad8cbf931740d582c7dfa94ebp7@uc001lsz.2
2.62e-23FFCP PHASE1:Hg19::chr11:1213314..1213323,+#_e7177bdad8cbf931740d582c7dfa94ebp7@uc001lsz.2
4.1e-23FFCP PHASE1:Hg19::chr1:33608427..33608437,-#_2a2202f0fef3161932cd44fedecffda2p2@uc001bxa.1
4.1e-23FFCP PHASE2:Hg19::chr1:33608427..33608437,-#_2a2202f0fef3161932cd44fedecffda2p2@uc001bxa.1
4.1e-23FFCP PHASE1:Hg19::chr14:102704788..102704801,-#_2a2202f0fef3161932cd44fedecffda2p10@MOK
4.1e-23FFCP PHASE1:Hg19::chr15:101445820..101445832,-#_2a2202f0fef3161932cd44fedecffda2p@chr15:101445820..101445832, -
4.1e-23FFCP PHASE2:Hg19::chr14:102704788..102704801,-#_2a2202f0fef3161932cd44fedecffda2p10@MOK
4.1e-23FFCP PHASE2:Hg19::chr15:101445820..101445832,-#_2a2202f0fef3161932cd44fedecffda2p@chr15:101445820..101445832, -
6.4e-23FFCP PHASE1:Hg19::chr11:119461966..119461970,+#_16db8ca752b3806807deffb92f4bfc0dp@chr11:119461966..119461970, +
6.4e-23FFCP PHASE2:Hg19::chr11:119461966..119461970,+#_16db8ca752b3806807deffb92f4bfc0dp@chr11:119461966..119461970, +
1.53e-21FFCP PHASE1:Hg19::chr12:52681676..52681679,-#_1d626dc7a0784f02285f046ee4dd19c4p6@KRT81
1.53e-21FFCP PHASE2:Hg19::chr12:52680234..52680245,-#_1d626dc7a0784f02285f046ee4dd19c4p@chr12:52680234..52680245, -
1.53e-21FFCP PHASE2:Hg19::chr12:52681676..52681679,-#_1d626dc7a0784f02285f046ee4dd19c4p6@KRT81
1.53e-21FFCP PHASE1:Hg19::chr1:20407255..20407264,+#_1d626dc7a0784f02285f046ee4dd19c4p@chr1:20407255..20407264, +
1.53e-21FFCP PHASE1:Hg19::chr2:126569768..126569794,+#_1d626dc7a0784f02285f046ee4dd19c4p@chr2:126569768..126569794, +
1.53e-21FFCP PHASE2:Hg19::chr1:20407255..20407264,+#_1d626dc7a0784f02285f046ee4dd19c4p@chr1:20407255..20407264, +
1.53e-21FFCP PHASE1:Hg19::chr12:52680234..52680245,-#_1d626dc7a0784f02285f046ee4dd19c4p@chr12:52680234..52680245, -
1.53e-21FFCP PHASE2:Hg19::chr2:126569768..126569794,+#_1d626dc7a0784f02285f046ee4dd19c4p@chr2:126569768..126569794, +
1.88e-21FFCP PHASE1:Hg19::chr3:111631881..111631893,+#_06f393da01312d3935739d434295b68bp@chr3:111631881..111631893, +
1.88e-21FFCP PHASE2:Hg19::chr3:111631881..111631893,+#_06f393da01312d3935739d434295b68bp@chr3:111631881..111631893, +
2.3e-21FFCP PHASE1:Hg19::chr22:28329197..28329214,-#_2db832abee4e6a61b93410f67acc4fbfp@chr22:28329197..28329214, -
2.3e-21FFCP PHASE1:Hg19::chr11:329487..329504,-#_2db832abee4e6a61b93410f67acc4fbfp@chr11:329487..329504, -
2.3e-21FFCP PHASE2:Hg19::chr22:28329197..28329214,-#_2db832abee4e6a61b93410f67acc4fbfp@chr22:28329197..28329214, -
2.3e-21FFCP PHASE2:Hg19::chr11:329487..329504,-#_2db832abee4e6a61b93410f67acc4fbfp@chr11:329487..329504, -

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