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{{DOID
{{DOID
|id=DOID:2994
|alt_id=DOID:2157
|name=germ cell cancer
|namespace=
|def="A cell type cancer that has_material_basis_in abnormally proliferating cells derived_from germ cells." [url:http\://en.wikipedia.org/wiki/Germ_cell_tumor]
|xref=
|is_a=DOID:0050687
|synonym="germ cell neoplasm" RELATED [CSP2005:2016-0850];;"germ cell tumour" RELATED [SNOMEDCT_2005_07_31:28307001];;"malignant tumor of the germ cell" EXACT [NCI2004_11_17:C4925]
|comment=
|comment=
|alt_id=DOID:2157
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A cell type cancer that has_material_basis_in abnormally proliferating cells derived_from germ cells." [url:http://en.wikipedia.org/wiki/Germ_cell_tumor]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=DOID:2994
|is_a=DOID:0050687
|is_obsolete=
|located_in=
|located_in=
|name=germ cell cancer
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|subset=
|synonym="germ cell neoplasm" RELATED [CSP2005:2016-0850];;"germ cell tumour" RELATED [SNOMEDCT_2005_07_31:28307001];;"malignant tumor of the germ cell" EXACT [NCI2004_11_17:C4925]
|union_of=
|xref=MSH:D009373;;NCI:C3708;;SNOMEDCT_2010_1_31:115233005;;SNOMEDCT_2010_1_31:189839002;;SNOMEDCT_2010_1_31:189854008;;SNOMEDCT_2010_1_31:28307001;;SNOMEDCT_2010_1_31:302853003;;SNOMEDCT_2010_1_31:402878003;;UMLS_CUI:C0205851
}}
}}

Latest revision as of 16:50, 12 September 2014

Name:germ cell cancer
Namespace:FANTOM
Definition:"A cell type cancer that has_material_basis_in abnormally proliferating cells derived_from germ cells." [url:http://en.wikipedia.org/wiki/Germ_cell_tumor]
Xrefs:
links:

MSH:D009373
NCI:C3708
SNOMEDCT_2010_1_31:115233005
SNOMEDCT_2010_1_31:189839002
SNOMEDCT_2010_1_31:189854008
SNOMEDCT_2010_1_31:28307001
SNOMEDCT_2010_1_31:302853003
SNOMEDCT_2010_1_31:402878003

UMLS_CUI:C0205851
Synonyms: "germ cell neoplasm" RELATED [CSP2005:2016-0850]
"germ cell tumour" RELATED [SNOMEDCT_2005_07_31:28307001]
"malignant tumor of the germ cell" EXACT [NCI2004_11_17:C4925]
Alt_id: DOID:2157

Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:DOID:0050687(cell type cancer)



Children


is a:DOID:3095 (germ cell and embryonal cancer),DOID:688 (embryonal cancer)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:2994 (germ cell cancer), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.32e-71FFCP PHASE2:Hg19::chr2:218875465..218875482,-#_792ec969c8a43ff610526b83b8e825a5p@chr2:218875465..218875482, -
2.32e-71FFCP PHASE1:Hg19::chr2:218875465..218875482,-#_792ec969c8a43ff610526b83b8e825a5p@chr2:218875465..218875482, -
7.16e-55FFCP PHASE2:Hg19::chr2:218875447..218875463,-#_2959a6f8aeeccaeafe9b4cf4acc7e188p@chr2:218875447..218875463, -
7.16e-55FFCP PHASE1:Hg19::chr12:7863680..7863695,+#_2959a6f8aeeccaeafe9b4cf4acc7e188p3@DPPA3
7.16e-55FFCP PHASE1:Hg19::chr2:218875447..218875463,-#_2959a6f8aeeccaeafe9b4cf4acc7e188p@chr2:218875447..218875463, -
7.16e-55FFCP PHASE2:Hg19::chr12:7863680..7863695,+#_2959a6f8aeeccaeafe9b4cf4acc7e188p3@DPPA3
6.24e-54FFCP PHASE2:Hg19::chr8:12808720..12808732,+#_9692c0432311da19c08619d9e1b288a1p19@KIAA1456
6.24e-54FFCP PHASE1:Hg19::chr8:12808720..12808732,+#_9692c0432311da19c08619d9e1b288a1p19@KIAA1456
6.24e-54FFCP PHASE2:Hg19::chr13:31590717..31590730,-#_9692c0432311da19c08619d9e1b288a1p@chr13:31590717..31590730, -
6.24e-54FFCP PHASE1:Hg19::chr13:31590717..31590730,-#_9692c0432311da19c08619d9e1b288a1p@chr13:31590717..31590730, -
5.21e-52FFCP PHASE2:Hg19::chr12:7864063..7864074,+#_541e635aedb736b766108c8660c9b362p2@DPPA3
5.21e-52FFCP PHASE1:Hg19::chr12:7864063..7864074,+#_541e635aedb736b766108c8660c9b362p2@DPPA3
2.88e-46FFCP PHASE1:Hg19::chr4:165953147..165953161,+#_2680b343c73462ab5705baeeb80b482fp3@TRIM60
2.88e-46FFCP PHASE2:Hg19::chr4:165953147..165953161,+#_2680b343c73462ab5705baeeb80b482fp3@TRIM60
3.12e-46FFCP PHASE1:Hg19::chrX:51361761..51361770,-#_81899c8daab06eed77fbb537936164e4p2@ENST00000417339
3.12e-46FFCP PHASE1:Hg19::chr3:5932149..5932178,+#_81899c8daab06eed77fbb537936164e4p@chr3:5932149..5932178, +
3.12e-46FFCP PHASE2:Hg19::chrX:51361761..51361770,-#_81899c8daab06eed77fbb537936164e4p2@ENST00000417339
3.12e-46FFCP PHASE2:Hg19::chr3:5932149..5932178,+#_81899c8daab06eed77fbb537936164e4p@chr3:5932149..5932178, +
3.37e-46FFCP PHASE2:Hg19::chr21:45681768..45681773,-#_44da063dba111912358520ea64824898p4@DNMT3L
3.37e-46FFCP PHASE1:Hg19::chr20:4228201..4228214,+#_44da063dba111912358520ea64824898p@chr20:4228201..4228214, +
3.37e-46FFCP PHASE2:Hg19::chr20:4228201..4228214,+#_44da063dba111912358520ea64824898p@chr20:4228201..4228214, +
3.37e-46FFCP PHASE1:Hg19::chr21:45681768..45681773,-#_44da063dba111912358520ea64824898p4@DNMT3L
3.65e-46FFCP PHASE2:Hg19::chr20:4228155..4228166,+#_f7c06632d1e550677ca3f5ad295926b9p@chr20:4228155..4228166, +
3.65e-46FFCP PHASE2:Hg19::chr9:15883095..15883109,+#_f7c06632d1e550677ca3f5ad295926b9p@chr9:15883095..15883109, +
3.65e-46FFCP PHASE1:Hg19::chr9:15883095..15883109,+#_f7c06632d1e550677ca3f5ad295926b9p@chr9:15883095..15883109, +
3.65e-46FFCP PHASE1:Hg19::chr20:4228155..4228166,+#_f7c06632d1e550677ca3f5ad295926b9p@chr20:4228155..4228166, +
3.95e-46FFCP PHASE1:Hg19::chr9:15883050..15883085,+#_7b76f5a8a669bf717d9c453f0e6c2302p@chr9:15883050..15883085, +
3.95e-46FFCP PHASE2:Hg19::chr9:15883050..15883085,+#_7b76f5a8a669bf717d9c453f0e6c2302p@chr9:15883050..15883085, +
3.09e-45FFCP PHASE1:Hg19::chr1:27385778..27385789,+#_b713067e155cba3f71eed9e30ce9be3ep@chr1:27385778..27385789, +
3.09e-45FFCP PHASE2:Hg19::chr3:8407443..8407453,-#_b713067e155cba3f71eed9e30ce9be3ep@chr3:8407443..8407453, -
3.09e-45FFCP PHASE1:Hg19::chr12:8983864..8983875,-#_b713067e155cba3f71eed9e30ce9be3ep2@A2ML1-AS1
3.09e-45FFCP PHASE2:Hg19::chr1:155804376..155804383,-#_b713067e155cba3f71eed9e30ce9be3ep@chr1:155804376..155804383, -
3.09e-45FFCP PHASE1:Hg19::chr2:218876066..218876078,-#_b713067e155cba3f71eed9e30ce9be3ep@chr2:218876066..218876078, -
3.09e-45FFCP PHASE1:Hg19::chr11:18665025..18665064,+#_b713067e155cba3f71eed9e30ce9be3ep@chr11:18665025..18665064, +
3.09e-45FFCP PHASE2:Hg19::chr5:133764015..133764029,+#_b713067e155cba3f71eed9e30ce9be3ep@chr5:133764015..133764029, +
3.09e-45FFCP PHASE1:Hg19::chr11:83436107..83436115,-#_b713067e155cba3f71eed9e30ce9be3ep46@DLG2
3.09e-45FFCP PHASE2:Hg19::chr19:50016671..50016675,+#_b713067e155cba3f71eed9e30ce9be3ep22@FCGRT
3.09e-45FFCP PHASE2:Hg19::chr17:31618260..31618271,+#_b713067e155cba3f71eed9e30ce9be3ep@chr17:31618260..31618271, +
3.09e-45FFCP PHASE2:Hg19::chr1:27385778..27385789,+#_b713067e155cba3f71eed9e30ce9be3ep@chr1:27385778..27385789, +
3.09e-45FFCP PHASE2:Hg19::chr2:218876066..218876078,-#_b713067e155cba3f71eed9e30ce9be3ep@chr2:218876066..218876078, -
3.09e-45FFCP PHASE2:Hg19::chr11:83436107..83436115,-#_b713067e155cba3f71eed9e30ce9be3ep46@DLG2
3.09e-45FFCP PHASE2:Hg19::chr12:8983864..8983875,-#_b713067e155cba3f71eed9e30ce9be3ep2@A2ML1-AS1
3.09e-45FFCP PHASE1:Hg19::chr17:31618260..31618271,+#_b713067e155cba3f71eed9e30ce9be3ep@chr17:31618260..31618271, +
3.09e-45FFCP PHASE1:Hg19::chr19:50016671..50016675,+#_b713067e155cba3f71eed9e30ce9be3ep22@FCGRT
3.09e-45FFCP PHASE2:Hg19::chr11:18665025..18665064,+#_b713067e155cba3f71eed9e30ce9be3ep@chr11:18665025..18665064, +
3.09e-45FFCP PHASE1:Hg19::chr3:8407443..8407453,-#_b713067e155cba3f71eed9e30ce9be3ep@chr3:8407443..8407453, -
3.09e-45FFCP PHASE1:Hg19::chr5:133764015..133764029,+#_b713067e155cba3f71eed9e30ce9be3ep@chr5:133764015..133764029, +
3.09e-45FFCP PHASE1:Hg19::chr1:155804376..155804383,-#_b713067e155cba3f71eed9e30ce9be3ep@chr1:155804376..155804383, -
6.61e-44FFCP PHASE1:Hg19::chr21:45681737..45681760,-#_67bdca43f8d7e9ac906eefdbfaaef41ep2@DNMT3L
6.61e-44FFCP PHASE2:Hg19::chr21:45681737..45681760,-#_67bdca43f8d7e9ac906eefdbfaaef41ep2@DNMT3L
1.63e-40FFCP PHASE1:Hg19::chr1:60314016..60314043,+#_4fa8d68c26cb7cbae0d0530fd15ca847p@chr1:60314016..60314043, +
1.63e-40FFCP PHASE2:Hg19::chr8:12808701..12808712,+#_4fa8d68c26cb7cbae0d0530fd15ca847p16@KIAA1456
1.63e-40FFCP PHASE1:Hg19::chr8:12808701..12808712,+#_4fa8d68c26cb7cbae0d0530fd15ca847p16@KIAA1456
1.63e-40FFCP PHASE2:Hg19::chr1:60314016..60314043,+#_4fa8d68c26cb7cbae0d0530fd15ca847p@chr1:60314016..60314043, +
1.87e-40FFCP PHASE1:Hg19::chr2:230804505..230804520,-#_3da10ef2a5d5319e8e00f0ec1bb1b82bp@chr2:230804505..230804520, -
1.87e-40FFCP PHASE2:Hg19::chr2:230804505..230804520,-#_3da10ef2a5d5319e8e00f0ec1bb1b82bp@chr2:230804505..230804520, -
5.93e-40FFCP PHASE1:Hg19::chr21:45681774..45681821,-#_929012551c9d721f1ad5d1959766c45fp1@DNMT3L
5.93e-40FFCP PHASE2:Hg19::chr21:45681774..45681821,-#_929012551c9d721f1ad5d1959766c45fp1@DNMT3L
7.05e-38FFCP PHASE2:Hg19::chr2:207068264..207068271,+#_92fadbff56c478e71c22be51ea026eadp@chr2:207068264..207068271, +
7.05e-38FFCP PHASE1:Hg19::chr2:207068264..207068271,+#_92fadbff56c478e71c22be51ea026eadp@chr2:207068264..207068271, +
8.52e-38FFCP PHASE2:Hg19::chr5:36596685..36596706,+#_a9c0299d871d334c4667d2db727eb159p@chr5:36596685..36596706, +
8.52e-38FFCP PHASE1:Hg19::chrX:19141065..19141080,-#_a9c0299d871d334c4667d2db727eb159p3@GPR64
8.52e-38FFCP PHASE1:Hg19::chr12:8983894..8983910,-#_a9c0299d871d334c4667d2db727eb159p1@A2ML1-AS1
8.52e-38FFCP PHASE1:Hg19::chr12:4128088..4128115,+#_a9c0299d871d334c4667d2db727eb159p@chr12:4128088..4128115, +
8.52e-38FFCP PHASE2:Hg19::chrX:19141065..19141080,-#_a9c0299d871d334c4667d2db727eb159p3@GPR64
8.52e-38FFCP PHASE2:Hg19::chr12:4128088..4128115,+#_a9c0299d871d334c4667d2db727eb159p@chr12:4128088..4128115, +
8.52e-38FFCP PHASE2:Hg19::chr12:8983894..8983910,-#_a9c0299d871d334c4667d2db727eb159p1@A2ML1-AS1
8.52e-38FFCP PHASE1:Hg19::chr5:36596685..36596706,+#_a9c0299d871d334c4667d2db727eb159p@chr5:36596685..36596706, +
9.2e-38FFCP PHASE2:Hg19::chr19:49714057..49714062,+#_7857357ea5ff6b71da19ea1abadf0835p@chr19:49714057..49714062, +
9.2e-38FFCP PHASE2:Hg19::chr4:165953174..165953189,+#_7857357ea5ff6b71da19ea1abadf0835p1@TRIM60
9.2e-38FFCP PHASE2:Hg19::chr6:123318989..123318999,+#_7857357ea5ff6b71da19ea1abadf0835p@chr6:123318989..123318999, +
9.2e-38FFCP PHASE1:Hg19::chr2:216410925..216410936,+#_7857357ea5ff6b71da19ea1abadf0835p1@ENST00000417485
9.2e-38FFCP PHASE1:Hg19::chr19:49714057..49714062,+#_7857357ea5ff6b71da19ea1abadf0835p@chr19:49714057..49714062, +
9.2e-38FFCP PHASE2:Hg19::chr2:216410925..216410936,+#_7857357ea5ff6b71da19ea1abadf0835p1@ENST00000417485
9.2e-38FFCP PHASE1:Hg19::chr8:27046735..27046767,-#_7857357ea5ff6b71da19ea1abadf0835p@chr8:27046735..27046767, -
9.2e-38FFCP PHASE1:Hg19::chr4:165953174..165953189,+#_7857357ea5ff6b71da19ea1abadf0835p1@TRIM60
9.2e-38FFCP PHASE1:Hg19::chr6:123318989..123318999,+#_7857357ea5ff6b71da19ea1abadf0835p@chr6:123318989..123318999, +
9.2e-38FFCP PHASE2:Hg19::chr8:27046735..27046767,-#_7857357ea5ff6b71da19ea1abadf0835p@chr8:27046735..27046767, -
9.92e-38FFCP PHASE2:Hg19::chr4:165953213..165953229,+#_341ff79c9a6fa9010ceda41917ac1d5cp2@TRIM60
9.92e-38FFCP PHASE1:Hg19::chr4:165953213..165953229,+#_341ff79c9a6fa9010ceda41917ac1d5cp2@TRIM60
1.07e-37FFCP PHASE1:Hg19::chr9:15883133..15883144,+#_53777f85ba718085ecc504f734d3ebcfp@chr9:15883133..15883144, +
1.07e-37FFCP PHASE2:Hg19::chr9:15883133..15883144,+#_53777f85ba718085ecc504f734d3ebcfp@chr9:15883133..15883144, +
1.07e-37FFCP PHASE1:Hg19::chr3:99982282..99982305,+#_53777f85ba718085ecc504f734d3ebcfp@chr3:99982282..99982305, +
1.07e-37FFCP PHASE1:Hg19::chr3:9895464..9895477,-#_53777f85ba718085ecc504f734d3ebcfp@chr3:9895464..9895477, -
1.07e-37FFCP PHASE2:Hg19::chr3:99982282..99982305,+#_53777f85ba718085ecc504f734d3ebcfp@chr3:99982282..99982305, +
1.07e-37FFCP PHASE2:Hg19::chr3:9895464..9895477,-#_53777f85ba718085ecc504f734d3ebcfp@chr3:9895464..9895477, -
1.16e-37FFCP PHASE1:Hg19::chr4:8068231..8068247,+#_445f612bdbb5112306a96585b5d72d23p1@ENST00000510640
1.16e-37FFCP PHASE2:Hg19::chr4:8068231..8068247,+#_445f612bdbb5112306a96585b5d72d23p1@ENST00000510640
1.49e-36FFCP PHASE2:Hg19::chr16:8627066..8627076,+#_9748383dc5f40129681cc6815b8cda59p@chr16:8627066..8627076, +
1.49e-36FFCP PHASE2:Hg19::chr2:65786044..65786055,+#_9748383dc5f40129681cc6815b8cda59p@chr2:65786044..65786055, +
1.49e-36FFCP PHASE2:Hg19::chr12:8045030..8045044,+#_9748383dc5f40129681cc6815b8cda59p5@NANOGP1
1.49e-36FFCP PHASE1:Hg19::chr2:71755206..71755213,+#_9748383dc5f40129681cc6815b8cda59p@chr2:71755206..71755213, +
1.49e-36FFCP PHASE2:Hg19::chr16:8626925..8626935,+#_9748383dc5f40129681cc6815b8cda59p@chr16:8626925..8626935, +
1.49e-36FFCP PHASE2:Hg19::chr12:32717031..32717041,+#_9748383dc5f40129681cc6815b8cda59p@chr12:32717031..32717041, +
1.49e-36FFCP PHASE2:Hg19::chr21:27478988..27478996,-#_9748383dc5f40129681cc6815b8cda59p@chr21:27478988..27478996, -
1.49e-36FFCP PHASE1:Hg19::chr11:107782394..107782402,+#_9748383dc5f40129681cc6815b8cda59p@chr11:107782394..107782402, +
1.49e-36FFCP PHASE1:Hg19::chr10:71696103..71696151,-#_9748383dc5f40129681cc6815b8cda59p@chr10:71696103..71696151, -
1.49e-36FFCP PHASE2:Hg19::chr1:92406327..92406341,+#_9748383dc5f40129681cc6815b8cda59p@chr1:92406327..92406341, +
1.49e-36FFCP PHASE1:Hg19::chr13:100951268..100951280,+#_9748383dc5f40129681cc6815b8cda59p@chr13:100951268..100951280, +
1.49e-36FFCP PHASE2:Hg19::chr10:48320905..48320918,+#_9748383dc5f40129681cc6815b8cda59p@chr10:48320905..48320918, +

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