FFCP PHASE1:Hg19::chr12:109251345..109251366,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=54434 | |EntrezGene=54434 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30579 | |HGNC=30579 | ||
|TSSclassifier=strong | |||
|UniProt=Q8WYL5 | |UniProt=Q8WYL5 | ||
|association_with_transcript=0bp_to_ENST00000326495,ENST00000360239,ENST00000551165,NM_001161330,NM_018984,uc001tnm.2,uc001tnn.3_5end | |association_with_transcript=0bp_to_ENST00000326495,ENST00000360239,ENST00000551165,NM_001161330,NM_018984,uc001tnm.2,uc001tnn.3_5end | ||
|cluster_id=chr12:109251345..109251366,- | |||
|description=CAGE_peak_1_at_SSH1_5end | |description=CAGE_peak_1_at_SSH1_5end | ||
|id=chr12:109251345..109251366,- | |id=chr12:109251345..109251366,- | ||
|ontology_enrichment_celltype=CL:0002057!2.74e-15!42;CL:0000860!1.61e-13!45;CL:0000766!8.87e-12!76;CL:0002009!5.20e-11!65;CL:0000055!2.61e-10!180;CL:0002194!2.77e-10!63;CL:0000576!2.77e-10!63;CL:0000040!2.77e-10!63;CL:0000559!2.77e-10!63;CL:0000557!7.74e-10!71;CL:0002371!1.33e-08!591;CL:0000839!2.38e-08!70;CL:0000359!4.78e-07!32 | |ontology_enrichment_celltype=CL:0002057!2.74e-15!42;CL:0000860!1.61e-13!45;CL:0000766!8.87e-12!76;CL:0002009!5.20e-11!65;CL:0000055!2.61e-10!180;CL:0002194!2.77e-10!63;CL:0000576!2.77e-10!63;CL:0000040!2.77e-10!63;CL:0000559!2.77e-10!63;CL:0000557!7.74e-10!71;CL:0002371!1.33e-08!591;CL:0000839!2.38e-08!70;CL:0000359!4.78e-07!32 | ||
|ontology_enrichment_celltype_v019=CL:0000860;3.73e-15;33!CL:0002057;3.73e-15;33!CL:0000473;1.19e-10;39!CL:0000234;1.19e-10;39!CL:0000576;7.12e-08;48!CL:0000359;7.10e-07;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,2.15e-15,42;CL:0002057,2.15e-15,42;CL:0000473,3.26e-13,48;CL:0000234,3.26e-13,48;CL:0000766,1.06e-12,72;CL:0002009,6.80e-12,61;CL:0002194,3.93e-11,59;CL:0000576,3.93e-11,59;CL:0000040,3.93e-11,59;CL:0000559,3.93e-11,59;CL:0000557,1.16e-10,67;CL:0000839,3.46e-09,66;CL:0000359,4.24e-07,32 | |||
|ontology_enrichment_development_v019=CL:0002057;8.08e-12;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002204!2.47e-16!167;UBERON:0004765!5.84e-10!101;UBERON:0001434!5.84e-10!101;UBERON:0002371!1.11e-09!80;UBERON:0001474!5.21e-09!86;UBERON:0000914!3.59e-08!83;UBERON:0002329!3.59e-08!83;UBERON:0003077!3.59e-08!83;UBERON:0003059!3.59e-08!83;UBERON:0007282!3.59e-08!83;UBERON:0009618!3.59e-08!83;UBERON:0007285!3.59e-08!83;UBERON:0003081!5.04e-08!216;UBERON:0000486!1.08e-07!82;UBERON:0002390!3.92e-07!102;UBERON:0003061!3.92e-07!102;UBERON:0001134!8.29e-07!61;UBERON:0002036!8.29e-07!61;UBERON:0003082!8.29e-07!61;UBERON:0004290!9.07e-07!70 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002204,1.52e-16,167;UBERON:0001434,1.92e-10,100;UBERON:0002371,2.53e-10,76;UBERON:0003081,8.74e-10,203;UBERON:0004765,1.29e-09,90;UBERON:0001474,1.35e-09,82;UBERON:0000926,3.45e-09,315;UBERON:0004120,3.45e-09,315;UBERON:0006603,3.45e-09,315;UBERON:0002405,5.61e-08,93;UBERON:0002390,2.05e-07,98;UBERON:0003061,2.05e-07,98;UBERON:0000486,2.11e-07,83 | |||
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| ||
|short_description=p1@SSH1 | |short_description=p1@SSH1 | ||
}} | }} |
Latest revision as of 05:52, 16 September 2015
Short description: | p1@SSH1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SSH1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000326495, ENST00000360239, ENST00000551165, NM_001161330, NM_018984, uc001tnm.2, uc001tnn.3_5end |
EntrezGene: | SSH1 |
HGNC: | 30579 |
UniProt: | Q8WYL5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 2.15e-15 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.15e-15 | 42 |
defensive cell | 3.26e-13 | 48 |
phagocyte | 3.26e-13 | 48 |
myeloid leukocyte | 1.06e-12 | 72 |
macrophage dendritic cell progenitor | 6.80e-12 | 61 |
monopoietic cell | 3.93e-11 | 59 |
monocyte | 3.93e-11 | 59 |
monoblast | 3.93e-11 | 59 |
promonocyte | 3.93e-11 | 59 |
granulocyte monocyte progenitor cell | 1.16e-10 | 67 |
myeloid lineage restricted progenitor cell | 3.46e-09 | 66 |
vascular associated smooth muscle cell | 4.24e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system | 1.52e-16 | 167 |
skeletal system | 1.92e-10 | 100 |
bone marrow | 2.53e-10 | 76 |
lateral plate mesoderm | 8.74e-10 | 203 |
skeletal element | 1.29e-09 | 90 |
bone element | 1.35e-09 | 82 |
mesoderm | 3.45e-09 | 315 |
mesoderm-derived structure | 3.45e-09 | 315 |
presumptive mesoderm | 3.45e-09 | 315 |
immune system | 5.61e-08 | 93 |
hematopoietic system | 2.05e-07 | 98 |
blood island | 2.05e-07 | 98 |
multilaminar epithelium | 2.11e-07 | 83 |