FFCP PHASE1:Hg19::chr12:109109901..109109902,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr12:109109901..109109902,- | |||
|description=CAGE_peak_at_chr12:109109901..109109902,- | |description=CAGE_peak_at_chr12:109109901..109109902,- | ||
|id=chr12:109109901..109109902,- | |id=chr12:109109901..109109902,- | ||
|ontology_enrichment_celltype=CL:0000557!6.78e-12!71;CL:0002009!8.22e-12!65;CL:0000839!1.73e-11!70;CL:0002194!2.91e-11!63;CL:0000576!2.91e-11!63;CL:0000040!2.91e-11!63;CL:0000559!2.91e-11!63;CL:0000766!5.74e-10!76;CL:0002057!5.98e-10!42;CL:0000860!1.52e-09!45 | |ontology_enrichment_celltype=CL:0000557!6.78e-12!71;CL:0002009!8.22e-12!65;CL:0000839!1.73e-11!70;CL:0002194!2.91e-11!63;CL:0000576!2.91e-11!63;CL:0000040!2.91e-11!63;CL:0000559!2.91e-11!63;CL:0000766!5.74e-10!76;CL:0002057!5.98e-10!42;CL:0000860!1.52e-09!45 | ||
|ontology_enrichment_celltype_v019=CL:0000473;5.30e-12;39!CL:0000234;5.30e-12;39!CL:0000860;1.17e-09;33!CL:0002057;1.17e-09;33!CL:0000576;3.88e-09;48!CL:0002393;1.84e-08;6!CL:0002397;1.84e-08;6!CL:0000766;5.27e-08;69!CL:0000784;2.12e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,2.11e-17,48;CL:0000234,2.11e-17,48;CL:0000839,1.67e-15,66;CL:0002194,1.89e-15,59;CL:0000576,1.89e-15,59;CL:0000040,1.89e-15,59;CL:0000559,1.89e-15,59;CL:0000557,3.18e-15,67;CL:0000860,5.64e-15,42;CL:0002057,5.64e-15,42;CL:0002009,7.60e-15,61;CL:0000766,6.15e-14,72;CL:0000738,9.51e-09,136;CL:0002087,1.41e-08,115;CL:0000763,3.39e-08,108;CL:0000049,3.39e-08,108;CL:0002031,4.20e-08,120;CL:0000784,2.06e-07,3 | |||
|ontology_enrichment_development_v019=CL:0002057;1.82e-12;42!UBERON:0005425;9.88e-07;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!1.12e-09!80;UBERON:0001474!4.53e-09!86;UBERON:0004765!4.76e-09!101;UBERON:0001434!4.76e-09!101;UBERON:0002390!4.78e-08!102;UBERON:0003061!4.78e-08!102;UBERON:0002193!8.03e-08!112 | |||
|ontology_enrichment_uberon_v019=UBERON:0000941;9.88e-07;1!UBERON:0001785;9.88e-07;1!UBERON:0002464;9.88e-07;1!UBERON:0004904;9.88e-07;1!UBERON:0001021;9.88e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,4.97e-13,76;UBERON:0001474,7.79e-12,82;UBERON:0002405,1.82e-11,93;UBERON:0002390,1.06e-10,98;UBERON:0003061,1.06e-10,98;UBERON:0002193,1.16e-10,108;UBERON:0004765,1.73e-10,90;UBERON:0001434,4.12e-09,100;UBERON:0000941,9.91e-07,1;UBERON:0001785,9.91e-07,1;UBERON:0002464,9.91e-07,1;UBERON:0004904,9.91e-07,1;UBERON:0001021,9.91e-07,1;UBERON:0003902,9.91e-07,1;UBERON:0005425,9.91e-07,1 | |||
|phase1_expression=0,0.856402095563933,0,0,0.446961094427288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.273748850145768,0.502170558379211,0.687720651731561,0,0.314843125254717,0.393364276848904,0,0.77408061658038,0.919421224478927,0,0,0,0.426507697462265,0.293600439334847,3.87796785972314,2.00544447470142,2.82114131930607,0.223915474239924,0.647787332037959,0.515151135268373,0.581592955118259,0,0.727752183563449,1.16214518452842,1.6446715520873,0.619412741790207,1.7261543539329,0.768482119587302,0.47296445977717,1.72372840368309,1.29096936716765,2.70852973188684,0.564727018627814,0.545812300115692,0.224723484445085,0.612167784741805,0.320929027076094,0,0,0.997318288108159,0.426224750532694,0.870627715885752,0,0,2.76373531782418,3.65038042894141,1.52032191293582,0,0.736555271975129,0,0,0.425208599930087,0.209658645508376,0.561643155732475,0.600707571366025,0,0.570025487482497,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0.263384084775077,0.196709770113833,1.17903228824749,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.506039384039006,0,0,0,0,0,0,0,0,0,0,0.289648807765598,0,0,0,0.722878304769133,0,0.289693037921647,0,0,0.189069634328136,0,0.351339142772504,0.261958150995425,0,0,0,0.174129737299267,0.664789802594326,1.66943437013739,1.14398982156026,0,0.198762407366705,0,0.347140501607594,0,0,0,0.208994966536811,0,1.06729878806013,0,0,0,0,0,0,0.357198913136319,0.44905874525234,0.112611480483322,0,0,0,0,0,0,0,0.12663051166458,0.397227542439656,0.286836620748814,0,0,0,0.24666754841716,0,0.269421344139376,0.326923806226917,0,0,0,0.312160076830321,0,0.149448680551801,0.352303495931295,0.971237666208789,0.280901613404497,0.816616685019573,0.368502951935304,0.103325781175765,0,0.494533858557114,0,0,0.336672227908132,0,0.277064115484183,0.438977620880838,0.30648779579902,0.150238058906597,0,0.717558542755448,0.427114777637135,0,1.80054657650641,0.309157587715317,0.772921620136887,0,1.18143432568886,0.0974370051611986,1.26216887122057,0.0920498986422993,0,0.710019185033229,0.10075209822764,0.169560592310488,0,0,0,0,0.132529768321485,0.116193942869518,0.10366105501537,0,0,0,0.643240938192885,0,0.464367928031979,0,0,0,0,0,0.217879444092406,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0.231860809950154,0,0,0.462985512576611,0.190254152234598,0,0,0.984868024349589,0.702012795417713,1.0404181360211,0,0,0.141775097242386,0.268675568108545,0.290633938513962,0,0,0.176096868026452,0.207328115540772,1.44119953416961,0.6312121671319,0,0,0,0,0,0,0.285826432630578,0.112131084345361,0,0,0.129271715757778,0,0.845302752556,0,0,0,0,0,0.285955987316295,0,0,0,0,0,0.301439377059586,0,0.099972991182057,0,1.00451418286425,0,0,0,0,0.723906533337896,0.205476322550383,0.716243852959582,0.112085143993527,0.591092280605782,0.431255149719035,0.256686072559497,0,0,0,0,0,0,0,0,0,0,0,0.623912584592421,0.356857977594324,0.946214490203608,0,0,0,0,0,0.184369168541703,0.173767228936166,0,0,0.413536052245775,1.07857100409308,0.106727557803444,0,0,0,0,0.306923946576125,0,0,0,0.160853921143607,0,0,0,0.164254312027618,0,0,0.241718899183244,0,0.184161977871793,0,0.364182336013434,0.262248829918848,0,0.231046011313244,0,0,0,0,0,0,0,0,0,0.254876273045038,0,0,0,0.261435451024901,0.256450125116389,0,0,0.309123034943167,0,0.41254749960294,0,0,0,0.386682873168488,0.154048617114644,0,0.964856007391714,0,0.145016693914229,0.170453254832202,0.178064071293475,0,0.192190067365106,0.382838137483752,0.10115778085555,0,1.25924938732256,0.6970372701606,0,0,0,0,0.286249773483982,0,0.316379424718726,0,0.255897791311334,0,0,0.78494864019923,0.539617372749944,0,0.353437207037059,0.202182481573316,0,0,0,0.243713489631284,0,0.545999645631943,0.424216295861138,0,0,0,0,0,0,0,0,0,0.143411352204052,0,0,0,0.211107635297664,0.658589785919804,0,0,0,0,0,0,0,0,0,0,0.507447609232169,0,0,0,0.411362273086194,0.648473311192717,0,0,0,0,0.735120647943095,0,0.144269212976445,0.284567373393656,0,0,0.191505370132367,0,0,0,0.684704037099577,0,0,0,0.1605880751037,0,0,0,0.614481528616916,0,0.166849141711909,0,0.278406173895242,0,0,0,0,0,0.146508179271894,0.121360521749513,0.111443384277478,0.284136146806413,0,0.296964680832639,0,0,0,0.111308705022906,0.16480387422676,1.05562704063997,1.9924798825107,0.276283915531148,0,0.306806047506464,0.369254416383208,0.933118762985422,0.359473404589307,0.537063524026827,0,0.0986434056369336,0,0,0,0.185536196323703,1.99613798001194,0,0.349839999984783,0,0.568967241427498,0.254253650292766,0,0.344743373241465,0,0.173624994933292,1.77148277162768,0.361789315876224,0,0,0.295547618953547,0,0,0.41827123283581,0.307801034015188,0,0.23056390438806,0.269272933229316,0,0.31900115973192,0.0915975934018623,0,0,0.31396051279005,0.166211681900156,0,0.19606253431774,0,0,0.317873157960757,0.421996129056054,0.163232808159148,0,0.216388639742091,0.995261931078505,0.265372693510018,2.4441205797345,0.296521128680622,0,0,0.539209063845416,3.21031058919516,0,0.182454789215666,0.19566461893209,0,0,1.20990716048664,0.30607276163049,0.126373159256976,0,0.103688191397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| ||
|short_description=p@chr12:109109901..109109902,- | |short_description=p@chr12:109109901..109109902,- | ||
}} | }} |
Latest revision as of 04:40, 24 July 2015
Short description: | p@chr12:109109901..109109902, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:109109901..109109902, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 2.11e-17 | 48 |
phagocyte | 2.11e-17 | 48 |
myeloid lineage restricted progenitor cell | 1.67e-15 | 66 |
monopoietic cell | 1.89e-15 | 59 |
monocyte | 1.89e-15 | 59 |
monoblast | 1.89e-15 | 59 |
promonocyte | 1.89e-15 | 59 |
granulocyte monocyte progenitor cell | 3.18e-15 | 67 |
classical monocyte | 5.64e-15 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.64e-15 | 42 |
macrophage dendritic cell progenitor | 7.60e-15 | 61 |
myeloid leukocyte | 6.15e-14 | 72 |
leukocyte | 9.51e-09 | 136 |
nongranular leukocyte | 1.41e-08 | 115 |
myeloid cell | 3.39e-08 | 108 |
common myeloid progenitor | 3.39e-08 | 108 |
hematopoietic lineage restricted progenitor cell | 4.20e-08 | 120 |
plasmacytoid dendritic cell | 2.06e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 4.97e-13 | 76 |
bone element | 7.79e-12 | 82 |
immune system | 1.82e-11 | 93 |
hematopoietic system | 1.06e-10 | 98 |
blood island | 1.06e-10 | 98 |
hemolymphoid system | 1.16e-10 | 108 |
skeletal element | 1.73e-10 | 90 |
skeletal system | 4.12e-09 | 100 |
cranial nerve II | 9.91e-07 | 1 |
cranial nerve | 9.91e-07 | 1 |
nerve trunk | 9.91e-07 | 1 |
nerve connecting eye with brain | 9.91e-07 | 1 |
nerve | 9.91e-07 | 1 |
retinal neural layer | 9.91e-07 | 1 |
presumptive neural retina | 9.91e-07 | 1 |