FFCP PHASE1:Mm9::chr1:3661752..3661814,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=497097 | |EntrezGene=497097 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=Q5GH67 | |UniProt=Q5GH67 | ||
|association_with_transcript=-173bp_to_ENSMUST00000070533,NM_001011874,uc007aeu.1_5end | |association_with_transcript=-173bp_to_ENSMUST00000070533,NM_001011874,uc007aeu.1_5end | ||
|cluster_id=chr1:3661752..3661814,- | |||
|description=CAGE_peak_1_at_Xkr4_5end | |description=CAGE_peak_1_at_Xkr4_5end | ||
|id=chr1:3661752..3661814,- | |id=chr1:3661752..3661814,- | ||
|ontology_enrichment_celltype=CL:0000540!1.86e-15!33;CL:0000047!1.86e-15!33;CL:0000031!1.86e-15!33;CL:0000404!1.86e-15!33;CL:0000393!1.25e-12!39;CL:0000211!1.25e-12!39;CL:0000117!4.94e-12!23;CL:0000337!4.94e-12!23;CL:0000221!7.76e-12!44;CL:0000133!7.76e-12!44;CL:0002319!1.22e-11!43;CL:0000055!3.18e-09!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,2.62e-17,33;CL:0000047,2.62e-17,33;CL:0000031,2.62e-17,33;CL:0000404,2.62e-17,33;CL:0000393,3.81e-14,39;CL:0000211,3.81e-14,39;CL:0000117,5.77e-14,23;CL:0000337,5.77e-14,23;CL:0000221,5.22e-13,44;CL:0000133,5.22e-13,44;CL:0002319,8.93e-13,43 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!3.32e-27!102;UBERON:0000924!3.32e-27!102;UBERON:0006601!3.32e-27!102;UBERON:0000073!9.38e-27!75;UBERON:0001016!9.38e-27!75;UBERON:0001017!2.21e-26!73;UBERON:0005743!2.21e-26!73;UBERON:0002346!1.51e-24!71;UBERON:0003075!1.51e-24!71;UBERON:0007284!1.51e-24!71;UBERON:0000033!7.55e-21!63;UBERON:0001049!2.61e-20!52;UBERON:0005068!2.61e-20!52;UBERON:0006241!2.61e-20!52;UBERON:0007135!2.61e-20!52;UBERON:0000955!2.51e-19!50;UBERON:0006238!2.51e-19!50;UBERON:0003056!4.41e-19!49;UBERON:0002616!9.40e-19!49;UBERON:0002020!3.99e-17!34;UBERON:0003080!2.42e-16!40;UBERON:0002780!7.29e-16!39;UBERON:0001890!7.29e-16!39;UBERON:0006240!7.29e-16!39;UBERON:0002791!5.41e-14!29;UBERON:0003528!5.41e-14!29;UBERON:0001893!5.41e-14!29;UBERON:0000956!1.16e-09!21;UBERON:0001869!1.16e-09!21;UBERON:0000203!1.16e-09!21;UBERON:0000468!1.50e-09!333;UBERON:0007811!5.05e-09!86;UBERON:0002619!1.04e-08!17;UBERON:0002021!1.17e-07!10;UBERON:0000411!1.17e-07!10;UBERON:0001950!1.17e-07!10;UBERON:0000153!7.13e-07!94;UBERON:0000922!8.21e-07!328 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.39e-29,75;UBERON:0001017,6.68e-29,73;UBERON:0004121,1.40e-28,95;UBERON:0000924,1.40e-28,95;UBERON:0006601,1.40e-28,95;UBERON:0002346,1.15e-25,64;UBERON:0003075,1.15e-25,64;UBERON:0007284,1.15e-25,64;UBERON:0000073,6.64e-24,54;UBERON:0010371,7.83e-23,73;UBERON:0001049,6.02e-22,52;UBERON:0005068,6.02e-22,52;UBERON:0006241,6.02e-22,52;UBERON:0007135,6.02e-22,52;UBERON:0003056,8.86e-21,49;UBERON:0002020,1.43e-19,34;UBERON:0000955,1.73e-18,47;UBERON:0006238,1.73e-18,47;UBERON:0010314,5.94e-18,92;UBERON:0002616,7.64e-18,46;UBERON:0003080,1.57e-17,40;UBERON:0002780,5.68e-17,39;UBERON:0001890,5.68e-17,39;UBERON:0006240,5.68e-17,39;UBERON:0003528,7.09e-16,29;UBERON:0002791,7.09e-16,29;UBERON:0001893,7.09e-16,29;UBERON:0000956,9.09e-11,21;UBERON:0001869,9.09e-11,21;UBERON:0000203,9.09e-11,21;UBERON:0002619,1.25e-09,17;UBERON:0002021,8.66e-09,10;UBERON:0000411,8.66e-09,10;UBERON:0001950,8.66e-09,10 | |||
|phase1_expression=1.12104192973356,0,0.454999239389536,0,0,0.839396359559449,1.16806320297763,0,0,0,0,0,0,0,0,0,0,0,0,0,2.72138528483423,0,0,0.319984845586813,0.45881856213434,0,0.430761996159075,0,0.190023419456374,0,1.10865255327652,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183546752161682,0.782391344348039,0,0.439372365468944,1.36100929351998,0.279972843250725,0,0,0,0,0.514518872071894,4.29800159908135,1.03134418455488,10.5204559646991,5.81890077199236,12.6766280701236,0.338844532069132,0,0,0,0,1.19840044207362,0,2.28117147078651,2.02508907497536,3.57552434297349,10.5690864229407,7.06779331045163,4.77714116938321,2.77951865952885,2.75765635983006,16.5173821499083,16.4716666129892,11.366883460962,8.5726087024626,8.78281378583133,12.5019208933622,6.14202597803038,11.8180148106653,10.5430790965999,20.3293723976831,16.3727432918968,11.183966749518,1.36307147999731,3.09843396437821,0.579728977403356,0,0,0,0,0,0.421333260395256,0,0,0,2.67602497575693,0,0,0,0,0,0.505524445014783,0,0,0.445326417194474,3.12273588179045,2.74018930480927,2.07553947530453,2.86373017049983,1.64624189989987,0.879666139307728,0,0.433798070759735,0,0.485300549842228,0.220841518460394,0,0,3.22058876712702,5.23616767033638,0,0,0,0,6.29120685500255,6.40500843946077,10.6806199295935,15.2965401769203,20.7129520437568,12.0517065844545,16.2241263067758,6.82323737797119,0.124406970610093,0,1.05220927943237,1.17108398666433,2.75882525320168,4.50155324513373,2.86339153887859,8.36848939561333,6.91814089538189,6.93392761741993,6.20888089773638,0,0.189106080167819,0.351902248327898,0,0.556094498451196,0,0.411564272815887,5.57295947091781,0,0,0,0.414251545071004,0.703578179943289,0.900310307305074,1.65721314909647,0.983821158737019,1.23413690309903,0.465067889500816,0.268273401399619,0.350296027101508,0,2.13417703302824,0.648550476366846,0.292399974850665,0.658650345873152,0.134206418760372,11.7762371195911,12.2456488731348,0,0,0.853153002140936,1.16118335930219,0.77320476793256,1.00841762311671,1.55664630691409,1.14135375667535,0.474529061544512,0.823494773620054,0.502670417600539,0.596869416123452,1.9496408711912,0,0.648414149624083,0,0.189667900953082,1.71372768914593,0,0.203651327845314,0.387904974335251,0.841629838683823,0.948548056863859,0.147610147979602,0.31399745568275,0,0,0,0.589676985339609,0,0.202860121388503,0,0.50925170356284,0,0.324270453550071,0,0,0.744281895337007,0.312037673114561,0,0,0,1.10851914099963,2.65287976478679,1.14075483509418,0.339490171550376,0.704070744865506,0.335012514883631,0,0.390267295715598,0.472905432318573,0.221464689648775,0.797273843287435,1.14704320301017,0.172684981865896,0.144649058581512,0,0,0,0.275936746304732,4.81651769963376,6.68106613575558,0,0,0.94652465824877,4.68526493155966,4.30846795465598,6.4521575447189,9.35754431146055,18.1168979704853,4.45291771842384,8.18316402151673,6.7198922250909,8.67567554338879,0.283880170416537,2.49291845134157,6.67836533349662,2.14461159864296,1.32745138339963,2.42780636154981,1.51161778482376,0.754420319023592,0.590603785761546,1.84461088766356,2.58428293168221,2.54473610634254,2.85197902707777,1.26414703174326,0,0,5.10659408630682,0.720244376125241,0.776152102696527,2.14337035031592,2.30542303734956,2.85390108163313,5.26556865926787,1.8267896946876,0,0.847328283455281,0.441056796109924,1.15420377059036,0.807322133479528,1.20625849856312,0.358117032009409,1.14898629821543,0.291480836629851,3.8939313422207,0,1.23832120777933,0.370389054739423,0.376736914009382,0,0,0,0,0,0,0.474503990371703,1.42323626988794,1.94409613479242,0.627264888043406,1.09181281873089,1.48350781023303,1.32245529160537,0.26175594198403,0.259229946583586,0,0,2.99033092087958,2.31641886639937,3.69457257853691,5.29555276258697,2.36538575687089,4.10750335260139,2.73429208172295,2.72634295506848,0.241584120826006,0,0.316011120628178,0.608175645870493,0.718976700153791,0,0,0.198681354781265,0.120195449519969,0.147689527174577,0,0.0762068066549998,0.302478555410522,0.0974578807397524,0.192423683280659,0,0.226730383615211,0.221985953374065,0.179427713218951,0.167884616364078,0.772758376128762,1.31377732815827,0.549454872801795,0.428736758158132,0,19.2015626489803,16.5717085142584,20.0513429703789,17.7008777813998,13.7016503954128,12.8416962556249,12.1504050041725,9.00642406448441,10.4222754066367,7.7664046762773,0.415149390336707,1.59609949360412,1.87806966329548,1.94485373654635,0.628839487883947,3.49302666055027,1.11123363900808,2.47242068686673,2.88827288632634,2.77966932940177,3.04175159868288,4.52703219326583,2.43467919421694,3.45735822986294,2.46972516509137,2.85776214769844,3.94006708212509,3.27945674788299,4.53294490883637,2.64958056241915,4.4573002810104,3.01708870470874,2.62279808942053,3.63366041580821,3.57615645578256,2.62305284464197,3.29270351170991,1.8414879800649,2.71608227691724,3.92799590160417,4.03359061622192,3.64466584789585,3.27384834535751,3.71848418846318,1.92906610981141,2.49810577937946,2.33931608445408,4.29742108096597,2.10417165275728,1.10295709559758,0.927471342481686 | |phase1_expression=1.12104192973356,0,0.454999239389536,0,0,0.839396359559449,1.16806320297763,0,0,0,0,0,0,0,0,0,0,0,0,0,2.72138528483423,0,0,0.319984845586813,0.45881856213434,0,0.430761996159075,0,0.190023419456374,0,1.10865255327652,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183546752161682,0.782391344348039,0,0.439372365468944,1.36100929351998,0.279972843250725,0,0,0,0,0.514518872071894,4.29800159908135,1.03134418455488,10.5204559646991,5.81890077199236,12.6766280701236,0.338844532069132,0,0,0,0,1.19840044207362,0,2.28117147078651,2.02508907497536,3.57552434297349,10.5690864229407,7.06779331045163,4.77714116938321,2.77951865952885,2.75765635983006,16.5173821499083,16.4716666129892,11.366883460962,8.5726087024626,8.78281378583133,12.5019208933622,6.14202597803038,11.8180148106653,10.5430790965999,20.3293723976831,16.3727432918968,11.183966749518,1.36307147999731,3.09843396437821,0.579728977403356,0,0,0,0,0,0.421333260395256,0,0,0,2.67602497575693,0,0,0,0,0,0.505524445014783,0,0,0.445326417194474,3.12273588179045,2.74018930480927,2.07553947530453,2.86373017049983,1.64624189989987,0.879666139307728,0,0.433798070759735,0,0.485300549842228,0.220841518460394,0,0,3.22058876712702,5.23616767033638,0,0,0,0,6.29120685500255,6.40500843946077,10.6806199295935,15.2965401769203,20.7129520437568,12.0517065844545,16.2241263067758,6.82323737797119,0.124406970610093,0,1.05220927943237,1.17108398666433,2.75882525320168,4.50155324513373,2.86339153887859,8.36848939561333,6.91814089538189,6.93392761741993,6.20888089773638,0,0.189106080167819,0.351902248327898,0,0.556094498451196,0,0.411564272815887,5.57295947091781,0,0,0,0.414251545071004,0.703578179943289,0.900310307305074,1.65721314909647,0.983821158737019,1.23413690309903,0.465067889500816,0.268273401399619,0.350296027101508,0,2.13417703302824,0.648550476366846,0.292399974850665,0.658650345873152,0.134206418760372,11.7762371195911,12.2456488731348,0,0,0.853153002140936,1.16118335930219,0.77320476793256,1.00841762311671,1.55664630691409,1.14135375667535,0.474529061544512,0.823494773620054,0.502670417600539,0.596869416123452,1.9496408711912,0,0.648414149624083,0,0.189667900953082,1.71372768914593,0,0.203651327845314,0.387904974335251,0.841629838683823,0.948548056863859,0.147610147979602,0.31399745568275,0,0,0,0.589676985339609,0,0.202860121388503,0,0.50925170356284,0,0.324270453550071,0,0,0.744281895337007,0.312037673114561,0,0,0,1.10851914099963,2.65287976478679,1.14075483509418,0.339490171550376,0.704070744865506,0.335012514883631,0,0.390267295715598,0.472905432318573,0.221464689648775,0.797273843287435,1.14704320301017,0.172684981865896,0.144649058581512,0,0,0,0.275936746304732,4.81651769963376,6.68106613575558,0,0,0.94652465824877,4.68526493155966,4.30846795465598,6.4521575447189,9.35754431146055,18.1168979704853,4.45291771842384,8.18316402151673,6.7198922250909,8.67567554338879,0.283880170416537,2.49291845134157,6.67836533349662,2.14461159864296,1.32745138339963,2.42780636154981,1.51161778482376,0.754420319023592,0.590603785761546,1.84461088766356,2.58428293168221,2.54473610634254,2.85197902707777,1.26414703174326,0,0,5.10659408630682,0.720244376125241,0.776152102696527,2.14337035031592,2.30542303734956,2.85390108163313,5.26556865926787,1.8267896946876,0,0.847328283455281,0.441056796109924,1.15420377059036,0.807322133479528,1.20625849856312,0.358117032009409,1.14898629821543,0.291480836629851,3.8939313422207,0,1.23832120777933,0.370389054739423,0.376736914009382,0,0,0,0,0,0,0.474503990371703,1.42323626988794,1.94409613479242,0.627264888043406,1.09181281873089,1.48350781023303,1.32245529160537,0.26175594198403,0.259229946583586,0,0,2.99033092087958,2.31641886639937,3.69457257853691,5.29555276258697,2.36538575687089,4.10750335260139,2.73429208172295,2.72634295506848,0.241584120826006,0,0.316011120628178,0.608175645870493,0.718976700153791,0,0,0.198681354781265,0.120195449519969,0.147689527174577,0,0.0762068066549998,0.302478555410522,0.0974578807397524,0.192423683280659,0,0.226730383615211,0.221985953374065,0.179427713218951,0.167884616364078,0.772758376128762,1.31377732815827,0.549454872801795,0.428736758158132,0,19.2015626489803,16.5717085142584,20.0513429703789,17.7008777813998,13.7016503954128,12.8416962556249,12.1504050041725,9.00642406448441,10.4222754066367,7.7664046762773,0.415149390336707,1.59609949360412,1.87806966329548,1.94485373654635,0.628839487883947,3.49302666055027,1.11123363900808,2.47242068686673,2.88827288632634,2.77966932940177,3.04175159868288,4.52703219326583,2.43467919421694,3.45735822986294,2.46972516509137,2.85776214769844,3.94006708212509,3.27945674788299,4.53294490883637,2.64958056241915,4.4573002810104,3.01708870470874,2.62279808942053,3.63366041580821,3.57615645578256,2.62305284464197,3.29270351170991,1.8414879800649,2.71608227691724,3.92799590160417,4.03359061622192,3.64466584789585,3.27384834535751,3.71848418846318,1.92906610981141,2.49810577937946,2.33931608445408,4.29742108096597,2.10417165275728,1.10295709559758,0.927471342481686 | ||
|short_description=p1@Xkr4 | |short_description=p1@Xkr4 | ||
}} | }} |
Latest revision as of 02:22, 27 September 2015
Short description: | p1@Xkr4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Xkr4_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | -173bp_to_ENSMUST00000070533, NM_001011874, uc007aeu.1_5end |
EntrezGene: | Xkr4 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 2.62e-17 | 33 |
neuronal stem cell | 2.62e-17 | 33 |
neuroblast | 2.62e-17 | 33 |
electrically signaling cell | 2.62e-17 | 33 |
electrically responsive cell | 3.81e-14 | 39 |
electrically active cell | 3.81e-14 | 39 |
CNS neuron (sensu Vertebrata) | 5.77e-14 | 23 |
neuroblast (sensu Vertebrata) | 5.77e-14 | 23 |
ectodermal cell | 5.22e-13 | 44 |
neurectodermal cell | 5.22e-13 | 44 |
neural cell | 8.93e-13 | 43 |
Ontology term | p-value | n |
---|---|---|
nervous system | 2.39e-29 | 75 |
central nervous system | 6.68e-29 | 73 |
ectoderm-derived structure | 1.40e-28 | 95 |
ectoderm | 1.40e-28 | 95 |
presumptive ectoderm | 1.40e-28 | 95 |
neurectoderm | 1.15e-25 | 64 |
neural plate | 1.15e-25 | 64 |
presumptive neural plate | 1.15e-25 | 64 |
regional part of nervous system | 6.64e-24 | 54 |
ecto-epithelium | 7.83e-23 | 73 |
neural tube | 6.02e-22 | 52 |
neural rod | 6.02e-22 | 52 |
future spinal cord | 6.02e-22 | 52 |
neural keel | 6.02e-22 | 52 |
pre-chordal neural plate | 8.86e-21 | 49 |
gray matter | 1.43e-19 | 34 |
brain | 1.73e-18 | 47 |
future brain | 1.73e-18 | 47 |
structure with developmental contribution from neural crest | 5.94e-18 | 92 |
regional part of brain | 7.64e-18 | 46 |
anterior neural tube | 1.57e-17 | 40 |
regional part of forebrain | 5.68e-17 | 39 |
forebrain | 5.68e-17 | 39 |
future forebrain | 5.68e-17 | 39 |
brain grey matter | 7.09e-16 | 29 |
regional part of telencephalon | 7.09e-16 | 29 |
telencephalon | 7.09e-16 | 29 |
cerebral cortex | 9.09e-11 | 21 |
cerebral hemisphere | 9.09e-11 | 21 |
pallium | 9.09e-11 | 21 |
regional part of cerebral cortex | 1.25e-09 | 17 |
occipital lobe | 8.66e-09 | 10 |
visual cortex | 8.66e-09 | 10 |
neocortex | 8.66e-09 | 10 |