FFCP PHASE1:Mm9::chr19:46119821..46119837,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=16825 | |EntrezGene=16825 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=2265 | |||
|TSSclassifier=NA | |||
|UniProt=D3Z1C5 | |UniProt=D3Z1C5 | ||
|association_with_transcript=-117bp_to_ENSMUST00000152946_5end | |association_with_transcript=-117bp_to_ENSMUST00000152946_5end | ||
|cluster_id=chr19:46119821..46119837,- | |||
|description=CAGE_peak_8_at_Ldb1_5end | |description=CAGE_peak_8_at_Ldb1_5end | ||
|id=chr19:46119821..46119837,- | |id=chr19:46119821..46119837,- | ||
|ontology_enrichment_celltype=CL:0000117!4.50e-09!23;CL:0000337!4.50e-09!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.76e-09,23;CL:0000337,1.76e-09,23 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000153!2.40e-19!94;UBERON:0007811!9.65e-17!86;UBERON:0002020!1.84e-16!34;UBERON:0001049!1.95e-16!52;UBERON:0005068!1.95e-16!52;UBERON:0006241!1.95e-16!52;UBERON:0007135!1.95e-16!52;UBERON:0003056!4.78e-15!49;UBERON:0000033!1.05e-14!63;UBERON:0000955!1.84e-14!50;UBERON:0006238!1.84e-14!50;UBERON:0002346!2.97e-14!71;UBERON:0003075!2.97e-14!71;UBERON:0007284!2.97e-14!71;UBERON:0002791!5.95e-14!29;UBERON:0003528!5.95e-14!29;UBERON:0001893!5.95e-14!29;UBERON:0002616!7.89e-14!49;UBERON:0003080!2.74e-13!40;UBERON:0002780!6.57e-13!39;UBERON:0001890!6.57e-13!39;UBERON:0006240!6.57e-13!39;UBERON:0001017!4.90e-12!73;UBERON:0005743!4.90e-12!73;UBERON:0000956!2.34e-11!21;UBERON:0001869!2.34e-11!21;UBERON:0000203!2.34e-11!21;UBERON:0000073!6.31e-11!75;UBERON:0001016!6.31e-11!75;UBERON:0004121!8.38e-11!102;UBERON:0000924!8.38e-11!102;UBERON:0006601!8.38e-11!102;UBERON:0002619!6.20e-09!17;UBERON:0002021!6.68e-08!10;UBERON:0000411!6.68e-08!10;UBERON:0001950!6.68e-08!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,3.20e-17,64;UBERON:0003075,3.20e-17,64;UBERON:0007284,3.20e-17,64;UBERON:0001049,7.33e-17,52;UBERON:0005068,7.33e-17,52;UBERON:0006241,7.33e-17,52;UBERON:0007135,7.33e-17,52;UBERON:0002020,8.06e-17,34;UBERON:0000073,1.00e-16,54;UBERON:0003056,1.52e-15,49;UBERON:0010371,2.34e-15,73;UBERON:0000955,3.16e-15,47;UBERON:0006238,3.16e-15,47;UBERON:0002616,1.50e-14,46;UBERON:0003528,3.49e-14,29;UBERON:0002791,3.49e-14,29;UBERON:0001893,3.49e-14,29;UBERON:0003080,1.10e-13,40;UBERON:0002780,2.75e-13,39;UBERON:0001890,2.75e-13,39;UBERON:0006240,2.75e-13,39;UBERON:0004121,2.00e-12,95;UBERON:0000924,2.00e-12,95;UBERON:0006601,2.00e-12,95;UBERON:0001017,2.08e-12,73;UBERON:0000956,1.96e-11,21;UBERON:0001869,1.96e-11,21;UBERON:0000203,1.96e-11,21;UBERON:0001016,2.42e-11,75;UBERON:0010314,3.86e-10,92;UBERON:0002619,6.74e-09,17;UBERON:0002021,3.01e-08,10;UBERON:0000411,3.01e-08,10;UBERON:0001950,3.01e-08,10 | |||
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| ||
|short_description=p8@Ldb1 | |short_description=p8@Ldb1 | ||
}} | }} |
Latest revision as of 20:52, 25 September 2015
Short description: | p8@Ldb1 |
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Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_8_at_Ldb1_5end |
Coexpression cluster: | MCL_coexpression_mm9:2265 |
Association with transcript: | -117bp_to_ENSMUST00000152946_5end |
EntrezGene: | Ldb1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.76e-09 | 23 |
neuroblast (sensu Vertebrata) | 1.76e-09 | 23 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 3.20e-17 | 64 |
neural plate | 3.20e-17 | 64 |
presumptive neural plate | 3.20e-17 | 64 |
neural tube | 7.33e-17 | 52 |
neural rod | 7.33e-17 | 52 |
future spinal cord | 7.33e-17 | 52 |
neural keel | 7.33e-17 | 52 |
gray matter | 8.06e-17 | 34 |
regional part of nervous system | 1.00e-16 | 54 |
pre-chordal neural plate | 1.52e-15 | 49 |
ecto-epithelium | 2.34e-15 | 73 |
brain | 3.16e-15 | 47 |
future brain | 3.16e-15 | 47 |
regional part of brain | 1.50e-14 | 46 |
brain grey matter | 3.49e-14 | 29 |
regional part of telencephalon | 3.49e-14 | 29 |
telencephalon | 3.49e-14 | 29 |
anterior neural tube | 1.10e-13 | 40 |
regional part of forebrain | 2.75e-13 | 39 |
forebrain | 2.75e-13 | 39 |
future forebrain | 2.75e-13 | 39 |
ectoderm-derived structure | 2.00e-12 | 95 |
ectoderm | 2.00e-12 | 95 |
presumptive ectoderm | 2.00e-12 | 95 |
central nervous system | 2.08e-12 | 73 |
cerebral cortex | 1.96e-11 | 21 |
cerebral hemisphere | 1.96e-11 | 21 |
pallium | 1.96e-11 | 21 |
nervous system | 2.42e-11 | 75 |
structure with developmental contribution from neural crest | 3.86e-10 | 92 |
regional part of cerebral cortex | 6.74e-09 | 17 |
occipital lobe | 3.01e-08 | 10 |
visual cortex | 3.01e-08 | 10 |
neocortex | 3.01e-08 | 10 |