FFCP PHASE1:Hg19::chr11:64546232..64546255,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7536 | |EntrezGene=7536 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12950 | |HGNC=12950 | ||
|TSSclassifier=strong | |||
|UniProt=B4DX42,Q15637 | |UniProt=B4DX42,Q15637 | ||
|association_with_transcript=0bp_to_ENST00000422298,ENST00000463343,uc001oba.1,uc001obb.1,uc001obc.1,uc001obd.1,uc001obe.1,uc001obf.2,uc010rno.1_5end | |association_with_transcript=0bp_to_ENST00000422298,ENST00000463343,uc001oba.1,uc001obb.1,uc001obc.1,uc001obd.1,uc001obe.1,uc001obf.2,uc010rno.1_5end | ||
|cluster_id=chr11:64546232..64546255,- | |||
|description=CAGE_peak_2_at_SF1_5end | |description=CAGE_peak_2_at_SF1_5end | ||
|id=chr11:64546232..64546255,- | |id=chr11:64546232..64546255,- | ||
|ontology_enrichment_celltype=CL:0002057!2.41e-16!42;CL:0000738!1.57e-15!140;CL:0000860!5.35e-14!45;CL:0000037!8.68e-14!172;CL:0000566!8.68e-14!172;CL:0000766!2.40e-13!76;CL:0000988!2.01e-12!182;CL:0002032!2.52e-12!165;CL:0000837!2.52e-12!165;CL:0000763!2.00e-11!112;CL:0000049!2.00e-11!112;CL:0000557!1.27e-10!71;CL:0002031!2.34e-10!124;CL:0002087!1.78e-09!119;CL:0000839!2.59e-09!70;CL:0002009!2.22e-08!65;CL:0002194!5.21e-08!63;CL:0000576!5.21e-08!63;CL:0000040!5.21e-08!63;CL:0000559!5.21e-08!63 | |ontology_enrichment_celltype=CL:0002057!2.41e-16!42;CL:0000738!1.57e-15!140;CL:0000860!5.35e-14!45;CL:0000037!8.68e-14!172;CL:0000566!8.68e-14!172;CL:0000766!2.40e-13!76;CL:0000988!2.01e-12!182;CL:0002032!2.52e-12!165;CL:0000837!2.52e-12!165;CL:0000763!2.00e-11!112;CL:0000049!2.00e-11!112;CL:0000557!1.27e-10!71;CL:0002031!2.34e-10!124;CL:0002087!1.78e-09!119;CL:0000839!2.59e-09!70;CL:0002009!2.22e-08!65;CL:0002194!5.21e-08!63;CL:0000576!5.21e-08!63;CL:0000040!5.21e-08!63;CL:0000559!5.21e-08!63 | ||
|ontology_enrichment_celltype_v019=CL:0000860;1.22e-14;33!CL:0002057;1.22e-14;33!CL:0000473;1.80e-09;39!CL:0000234;1.80e-09;39!CL:0000576;2.73e-09;48!CL:0000766;2.05e-08;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,4.15e-17,136;CL:0000860,2.41e-16,42;CL:0002057,2.41e-16,42;CL:0000766,1.82e-15,72;CL:0000037,4.43e-15,168;CL:0000988,7.33e-14,177;CL:0002032,1.48e-13,161;CL:0000837,1.48e-13,161;CL:0000763,6.67e-13,108;CL:0000049,6.67e-13,108;CL:0000473,7.00e-13,48;CL:0000234,7.00e-13,48;CL:0000557,1.63e-12,67;CL:0002031,1.18e-11,120;CL:0000839,4.72e-11,66;CL:0002087,9.91e-11,115;CL:0002009,4.47e-10,61;CL:0002194,1.10e-09,59;CL:0000576,1.10e-09,59;CL:0000040,1.10e-09,59;CL:0000559,1.10e-09,59 | |||
|ontology_enrichment_development_v019=CL:0002057;3.76e-12;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!5.71e-20!115;UBERON:0002390!2.05e-11!102;UBERON:0003061!2.05e-11!102;UBERON:0002193!1.76e-10!112;UBERON:0002371!2.45e-08!80;UBERON:0002405!5.73e-08!115;UBERON:0001049!1.38e-07!57;UBERON:0005068!1.38e-07!57;UBERON:0006241!1.38e-07!57;UBERON:0007135!1.38e-07!57;UBERON:0001474!5.67e-07!86 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.23e-19,114;UBERON:0002390,5.57e-13,98;UBERON:0003061,5.57e-13,98;UBERON:0002193,7.12e-12,108;UBERON:0002405,7.98e-10,93;UBERON:0002371,8.26e-10,76;UBERON:0001474,3.27e-08,82;UBERON:0001049,2.66e-07,56;UBERON:0005068,2.66e-07,56;UBERON:0006241,2.66e-07,56;UBERON:0007135,2.66e-07,56;UBERON:0000073,3.38e-07,53;UBERON:0002616,3.38e-07,53 | |||
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| ||
|short_description=p2@SF1 | |short_description=p2@SF1 | ||
}} | }} |
Latest revision as of 04:33, 19 September 2015
Short description: | p2@SF1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SF1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000422298, ENST00000463343, uc001oba.1, uc001obb.1, uc001obc.1, uc001obd.1, uc001obe.1, uc001obf.2, uc010rno.1_5end |
EntrezGene: | SF1 |
HGNC: | 12950 |
UniProt: | B4DX42Q15637 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 4.15e-17 | 136 |
classical monocyte | 2.41e-16 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.41e-16 | 42 |
myeloid leukocyte | 1.82e-15 | 72 |
hematopoietic stem cell | 4.43e-15 | 168 |
hematopoietic cell | 7.33e-14 | 177 |
hematopoietic oligopotent progenitor cell | 1.48e-13 | 161 |
hematopoietic multipotent progenitor cell | 1.48e-13 | 161 |
myeloid cell | 6.67e-13 | 108 |
common myeloid progenitor | 6.67e-13 | 108 |
defensive cell | 7.00e-13 | 48 |
phagocyte | 7.00e-13 | 48 |
granulocyte monocyte progenitor cell | 1.63e-12 | 67 |
hematopoietic lineage restricted progenitor cell | 1.18e-11 | 120 |
myeloid lineage restricted progenitor cell | 4.72e-11 | 66 |
nongranular leukocyte | 9.91e-11 | 115 |
macrophage dendritic cell progenitor | 4.47e-10 | 61 |
monopoietic cell | 1.10e-09 | 59 |
monocyte | 1.10e-09 | 59 |
monoblast | 1.10e-09 | 59 |
promonocyte | 1.10e-09 | 59 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.23e-19 | 114 |
hematopoietic system | 5.57e-13 | 98 |
blood island | 5.57e-13 | 98 |
hemolymphoid system | 7.12e-12 | 108 |
immune system | 7.98e-10 | 93 |
bone marrow | 8.26e-10 | 76 |
bone element | 3.27e-08 | 82 |
neural tube | 2.66e-07 | 56 |
neural rod | 2.66e-07 | 56 |
future spinal cord | 2.66e-07 | 56 |
neural keel | 2.66e-07 | 56 |
regional part of nervous system | 3.38e-07 | 53 |
regional part of brain | 3.38e-07 | 53 |