FFCP PHASE1:Hg19::chr11:16629621..16629629,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55553 | |EntrezGene=55553 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16421 | |HGNC=16421 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-347bp_to_ENST00000525835_5end | |association_with_transcript=-347bp_to_ENST00000525835_5end | ||
|cluster_id=chr11:16629621..16629629,- | |||
|coexpression_cluster_id=C90 | |||
|description=CAGE_peak_30_at_SOX6_5end | |description=CAGE_peak_30_at_SOX6_5end | ||
|id=chr11:16629621..16629629,- | |id=chr11:16629621..16629629,- | ||
|ontology_enrichment_celltype=CL:0002566!4.34e-07!1 | |ontology_enrichment_celltype=CL:0002566!4.34e-07!1 | ||
|ontology_enrichment_celltype_v019=CL:0000333;5.73e-08;5 | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0005425;5.97e-34;1!UBERON:0003056;2.74e-12;3 | |||
|ontology_enrichment_disease=DOID:171!6.96e-16!10;DOID:3095!4.48e-07!22;DOID:2994!4.48e-07!22 | |||
|ontology_enrichment_disease_v019=DOID:171;5.27e-53;10!DOID:3095;1.51e-24;22!DOID:2994;1.51e-24;22!DOID:3193;6.48e-18;2!DOID:962;6.48e-18;2!DOID:1192;2.07e-12;3!DOID:1115;1.31e-07;20!DOID:169;7.58e-07;6 | |||
|ontology_enrichment_disease_v019_2=DOID:171,6.03e-53,10;DOID:3095,1.61e-24,22;DOID:2994,1.61e-24,22;DOID:3193,6.48e-18,2;DOID:962,6.48e-18,2;DOID:1192,2.07e-12,3;DOID:1115,1.25e-07,20;DOID:169,7.58e-07,6 | |||
|ontology_enrichment_uberon=UBERON:0003714!5.51e-14!2;UBERON:0001896!6.74e-09!3;UBERON:0005290!6.74e-09!3;UBERON:0010096!6.74e-09!3;UBERON:0000941!8.54e-08!1;UBERON:0004904!8.54e-08!1;UBERON:0002464!8.54e-08!1;UBERON:0001021!8.54e-08!1;UBERON:0001785!8.54e-08!1;UBERON:0002135!1.25e-07!1;UBERON:0002022!4.90e-07!1 | |||
|ontology_enrichment_uberon_v019=UBERON:0002346;3.31e-74;4!UBERON:0000923;3.31e-74;4!UBERON:0010316;3.31e-74;4!UBERON:0005291;3.31e-74;4!UBERON:0003714;2.40e-66;2!UBERON:0002050;1.35e-59;5!UBERON:0005423;1.35e-59;5!UBERON:0000941;5.97e-34;1!UBERON:0001785;5.97e-34;1!UBERON:0002464;5.97e-34;1!UBERON:0004904;5.97e-34;1!UBERON:0001021;5.97e-34;1!UBERON:0005162;9.86e-18;2!UBERON:0000122;9.86e-18;2!UBERON:0000010;1.09e-15;8!UBERON:0000013;5.73e-08;5!UBERON:0002410;5.73e-08;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003714,2.84e-66,2;UBERON:0000941,7.06e-34,1;UBERON:0001785,7.06e-34,1;UBERON:0002464,7.06e-34,1;UBERON:0004904,7.06e-34,1;UBERON:0001021,7.06e-34,1;UBERON:0003902,7.06e-34,1;UBERON:0005425,7.06e-34,1;UBERON:0005162,1.07e-17,2;UBERON:0000122,1.07e-17,2;UBERON:0000010,1.13e-15,8;UBERON:0001781,1.57e-09,4;UBERON:0000013,5.73e-08,5;UBERON:0002410,5.73e-08,5;UBERON:0000966,8.97e-07,6;UBERON:0005388,8.97e-07,6;UBERON:0001802,8.97e-07,6 | |||
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|short_description=p30@SOX6 | |short_description=p30@SOX6 | ||
}} | }} |
Latest revision as of 23:15, 16 September 2015
Short description: | p30@SOX6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_30_at_SOX6_5end |
Coexpression cluster: | C90_neuroectodermal_peripheral_neuroepithelioma_neuroblastoma_carcinoid_parietal_putamen |
Association with transcript: | -347bp_to_ENST00000525835_5end |
EntrezGene: | SOX6 |
HGNC: | 16421 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural tissue | 2.84e-66 | 2 |
cranial nerve II | 7.06e-34 | 1 |
cranial nerve | 7.06e-34 | 1 |
nerve trunk | 7.06e-34 | 1 |
nerve connecting eye with brain | 7.06e-34 | 1 |
nerve | 7.06e-34 | 1 |
retinal neural layer | 7.06e-34 | 1 |
presumptive neural retina | 7.06e-34 | 1 |
multi cell component structure | 1.07e-17 | 2 |
neuron projection bundle | 1.07e-17 | 2 |
peripheral nervous system | 1.13e-15 | 8 |
layer of retina | 1.57e-09 | 4 |
sympathetic nervous system | 5.73e-08 | 5 |
autonomic nervous system | 5.73e-08 | 5 |
retina | 8.97e-07 | 6 |
photoreceptor array | 8.97e-07 | 6 |
posterior segment of eyeball | 8.97e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 6.03e-53 | 10 |
germ cell and embryonal cancer | 1.61e-24 | 22 |
germ cell cancer | 1.61e-24 | 22 |
peripheral nerve sheath neoplasm | 6.48e-18 | 2 |
neurofibroma | 6.48e-18 | 2 |
peripheral nervous system neoplasm | 2.07e-12 | 3 |
sarcoma | 1.25e-07 | 20 |
neuroendocrine tumor | 7.58e-07 | 6 |