FFCP PHASE1:Mm9::chr12:5382494..5382511,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=208439 | |EntrezGene=208439 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1325 | |||
|TSSclassifier=NA | |||
|UniProt=G3X8T6,F7AGI9,B7ZNG7 | |UniProt=G3X8T6,F7AGI9,B7ZNG7 | ||
|association_with_transcript=-6bp_to_ENSMUST00000020958,ENSMUST00000170609,NM_001164493,uc007myw.2_5end | |association_with_transcript=-6bp_to_ENSMUST00000020958,ENSMUST00000170609,NM_001164493,uc007myw.2_5end | ||
|cluster_id=chr12:5382494..5382511,- | |||
|description=CAGE_peak_1_at_Klhl29_5end | |description=CAGE_peak_1_at_Klhl29_5end | ||
|id=chr12:5382494..5382511,- | |id=chr12:5382494..5382511,- | ||
|ontology_enrichment_celltype=CL:0000221!2.33e-17!44;CL:0000133!2.33e-17!44;CL:0002319!7.28e-17!43;CL:0000540!3.69e-16!33;CL:0000047!3.69e-16!33;CL:0000031!3.69e-16!33;CL:0000404!3.69e-16!33;CL:0000055!2.97e-15!50;CL:0000393!3.35e-15!39;CL:0000211!3.35e-15!39;CL:0000117!2.64e-11!23;CL:0000337!2.64e-11!23 | |ontology_enrichment_celltype=CL:0000221!2.33e-17!44;CL:0000133!2.33e-17!44;CL:0002319!7.28e-17!43;CL:0000540!3.69e-16!33;CL:0000047!3.69e-16!33;CL:0000031!3.69e-16!33;CL:0000404!3.69e-16!33;CL:0000055!2.97e-15!50;CL:0000393!3.35e-15!39;CL:0000211!3.35e-15!39;CL:0000117!2.64e-11!23;CL:0000337!2.64e-11!23 | ||
|ontology_enrichment_celltype_v019_2=CL:0000221,9.68e-18,44;CL:0000133,9.68e-18,44;CL:0002319,3.10e-17,43;CL:0000540,1.64e-16,33;CL:0000047,1.64e-16,33;CL:0000031,1.64e-16,33;CL:0000404,1.64e-16,33;CL:0000393,1.57e-15,39;CL:0000211,1.57e-15,39;CL:0000117,1.53e-11,23;CL:0000337,1.53e-11,23 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!1.04e-30!102;UBERON:0000924!1.04e-30!102;UBERON:0006601!1.04e-30!102;UBERON:0001017!3.33e-27!73;UBERON:0005743!3.33e-27!73;UBERON:0000073!3.88e-27!75;UBERON:0001016!3.88e-27!75;UBERON:0002346!1.18e-22!71;UBERON:0003075!1.18e-22!71;UBERON:0007284!1.18e-22!71;UBERON:0000033!1.10e-19!63;UBERON:0000955!1.23e-18!50;UBERON:0006238!1.23e-18!50;UBERON:0003056!1.50e-18!49;UBERON:0001049!2.27e-18!52;UBERON:0005068!2.27e-18!52;UBERON:0006241!2.27e-18!52;UBERON:0007135!2.27e-18!52;UBERON:0002616!4.82e-18!49;UBERON:0003080!6.48e-17!40;UBERON:0002780!1.16e-16!39;UBERON:0001890!1.16e-16!39;UBERON:0006240!1.16e-16!39;UBERON:0002020!1.91e-13!34;UBERON:0002791!2.45e-12!29;UBERON:0003528!2.45e-12!29;UBERON:0001893!2.45e-12!29;UBERON:0000153!1.12e-11!94;UBERON:0000468!1.15e-10!333;UBERON:0007811!4.21e-10!86;UBERON:0000956!3.53e-08!21;UBERON:0001869!3.53e-08!21;UBERON:0000203!3.53e-08!21;UBERON:0000922!6.73e-08!328 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,9.49e-31,95;UBERON:0000924,9.49e-31,95;UBERON:0006601,9.49e-31,95;UBERON:0001017,7.95e-28,73;UBERON:0001016,9.29e-28,75;UBERON:0010371,3.32e-24,73;UBERON:0002346,8.80e-23,64;UBERON:0003075,8.80e-23,64;UBERON:0007284,8.80e-23,64;UBERON:0000073,9.02e-20,54;UBERON:0003056,5.80e-19,49;UBERON:0001049,8.88e-19,52;UBERON:0005068,8.88e-19,52;UBERON:0006241,8.88e-19,52;UBERON:0007135,8.88e-19,52;UBERON:0000955,5.11e-18,47;UBERON:0006238,5.11e-18,47;UBERON:0002616,2.05e-17,46;UBERON:0003080,2.75e-17,40;UBERON:0002780,4.99e-17,39;UBERON:0001890,4.99e-17,39;UBERON:0006240,4.99e-17,39;UBERON:0002020,9.86e-14,34;UBERON:0010314,1.60e-13,92;UBERON:0003528,1.35e-12,29;UBERON:0002791,1.35e-12,29;UBERON:0001893,1.35e-12,29;UBERON:0000956,2.44e-08,21;UBERON:0001869,2.44e-08,21;UBERON:0000203,2.44e-08,21 | |||
|phase1_expression=4.16387002472464,0.697950815278722,0,0,0,0,0,0,0,0,0,0,0,0,1.66554880907831,0.404950534779652,0,0,0,0,3.91199134694921,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.204169356262369,0,0,0,0,0,0,4.65818226509636,2.93993100536592,2.75320128242522,2.34717403304412,8.50298109883741,11.8630538676615,11.0825042472342,2.09979632438044,8.62515386189829,0,0,0,2.57259436035947,2.57880095944881,6.70373719960675,8.6996078169627,8.99284664762456,9.50747105259269,3.72728985276045,2.66788438833342,0,0,0,3.29560121570245,3.45796474789399,23.1227835447905,16.3357185381346,14.0917724105426,5.99867067247988,5.07997644188711,12.9840247167851,13.4183659425531,19.3035945188104,5.50579404996943,7.02280359468532,6.91229399653096,11.6059933202571,12.0763689555181,10.939180781692,6.70039197603314,7.31591393041184,8.25110537994775,5.89257170947335,7.26095572075425,5.03278503728312,5.45228591998925,2.56943304363071,0.869593466105033,0,0,0.539703191637817,0,0,2.10666630197628,0,0,0,8.30976176682415,0,0,0,0,0.253359865475099,0,1.59857431606684,2.07150306917737,13.5082346548991,3.29622120855658,2.74018930480927,2.7673859670727,2.41156224884196,3.99801604261396,8.29399502775858,4.94389935468748,1.01219549843938,0,5.66183974815932,2.20841518460394,1.45462575940567,0,5.27005434620785,3.56059401582874,2.55457055208591,0,0,0,5.84183493678809,16.9275223042892,24.7539073662343,10.6032835317289,12.5300574091862,7.48036960414416,10.058958310201,3.36069900706044,1.8661045591514,1.76905930903572,2.10441855886474,4.81445638962004,3.44853156650209,3.78130472591233,6.63101198477146,12.042460349785,8.58361925908494,14.2426621330788,4.39795730256327,3.44908788692548,7.37513712654495,7.03804496655795,5.04150184583422,6.39508673218875,7.3132954969655,4.93877127379064,1.59227413454795,0,0,0,0.828503090142008,0.469052119962192,0.180062061461015,0.710234206755631,1.18058539048442,0.462801338662135,0,1.3413670069981,0.700592054203017,0.822799249567402,0.656669856316381,0.486412857275134,0.438599962275997,0.219550115291051,0.268412837520744,9.2527577368216,6.99751364179134,0,0.264450566663544,3.83918850963421,6.27039014023184,6.44337306610467,4.23535401709019,5.11469500843202,4.94586627892654,1.42358718463353,2.63518327558417,2.5133520880027,2.58643413653496,3.11942539390592,2.69645822596266,1.29682829924817,1.59313018603494,1.13800740571849,1.5994791765362,3.38123207019241,1.62921062276251,1.16371492300575,1.47285221769669,1.51767689098217,1.32849133181642,0.470996183524124,0.740382983530803,0.296452627087149,1.16791574001266,0.786235980452812,0,0.202860121388503,0.241177159752417,0.25462585178142,0.287696137450811,0.324270453550071,0,0,0.372140947668503,0,0.757736633841335,0.179397413521912,0,3.14080423283228,3.03186258832776,1.62964976442026,1.18821560042632,1.64283173801951,1.50755631697634,3.09456733151818,7.61021226645415,1.57635144106191,0.44292937929755,0.956728611944923,2.78567635016755,1.38147985492716,4.77341893318988,0,0,3.44234991113325,9.93372286697037,3.69266356971921,4.68846746368813,0.983609672260053,1.76729649043061,17.6684602873104,9.76096860741596,17.0184484208911,6.69112634267146,12.6995244226965,20.3815102167959,5.26253912177363,14.028281179743,12.2539211163422,10.9249247583414,2.83880170416537,1.78065603667255,3.74640006513225,7.25868541079156,0,1.69946445308487,1.81394134178851,0.754420319023592,2.36241514304618,2.76691633149535,2.32585463851399,2.54473610634254,2.49548164869305,3.16036757935816,2.10837217149998,1.03135543248187,6.12791290356818,6.12207719706455,8.27895576209629,12.8602221018955,8.33499098118686,8.74007206250146,9.05019613311665,5.48036908406279,3.52007562095566,5.71946591332314,1.54369878638473,6.26567761177624,3.71368181400583,4.76472106932431,3.9392873521035,2.79039529566604,2.91480836629851,4.45020724825223,2.9048049735635,7.22354037871279,8.33375373163703,2.82552685507037,2.7338845544205,2.74533807847827,0.169978429993855,0,0,0.954670618015114,2.68885594543965,7.1161813494397,5.40026704109006,4.59994251231831,5.45906409365444,3.37160865962052,6.4469695465762,2.87931536182433,1.16653475962614,0,0,0.897099276263873,0.330916980914195,0.777804753376191,1.16243841129958,0.506868376472335,1.05621514781179,3.51551839078665,1.36317147753424,1.44950472495604,0.864090018773596,2.8441000856536,4.25722952109345,3.59488350076895,3.76770386635606,2.68540043501222,2.58285761215644,1.56254084375959,0.738447635872886,1.21159739937777,0.838274873204998,1.10908803650525,1.8516997340553,1.34696578296461,1.98690733708667,2.49403421976732,1.10992976687032,0.62799699626633,0.671538465456314,7.53439416725543,3.19060208267009,2.56412273974171,4.28736758158132,5.01572104035363,5.64751842617067,7.82552902062201,4.58316410751517,5.67115501734169,5.48066015816514,6.7985450765073,4.05013500139084,3.60256962579376,2.71885445390523,3.10656187051092,2.17953429926771,7.98049746802062,6.65861062441123,5.59145449257076,4.19226325255965,4.22840069435032,3.77819437262746,4.53277125925567,2.56735367673452,4.54854981174835,5.83002389747551,5.28153755881013,6.64854703036165,6.78666615491614,6.31790158511746,9.52587382566147,5.91010062318763,5.40145817298374,6.1812885120496,5.2991611248383,4.11443102862498,3.54951612318675,4.29185141905178,7.70336008151341,5.27012530325851,4.23073039458383,6.40247905054704,5.5244639401947,6.24698923690964,3.36685362994643,7.3553711236988,5.81176446015824,4.91077251803627,5.57772628269478,4.82266527452853,9.49280196164194,4.21076895201735,5.15690529715916,5.54736162999646,3.08827986767322,2.78241402744506 | |phase1_expression=4.16387002472464,0.697950815278722,0,0,0,0,0,0,0,0,0,0,0,0,1.66554880907831,0.404950534779652,0,0,0,0,3.91199134694921,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.204169356262369,0,0,0,0,0,0,4.65818226509636,2.93993100536592,2.75320128242522,2.34717403304412,8.50298109883741,11.8630538676615,11.0825042472342,2.09979632438044,8.62515386189829,0,0,0,2.57259436035947,2.57880095944881,6.70373719960675,8.6996078169627,8.99284664762456,9.50747105259269,3.72728985276045,2.66788438833342,0,0,0,3.29560121570245,3.45796474789399,23.1227835447905,16.3357185381346,14.0917724105426,5.99867067247988,5.07997644188711,12.9840247167851,13.4183659425531,19.3035945188104,5.50579404996943,7.02280359468532,6.91229399653096,11.6059933202571,12.0763689555181,10.939180781692,6.70039197603314,7.31591393041184,8.25110537994775,5.89257170947335,7.26095572075425,5.03278503728312,5.45228591998925,2.56943304363071,0.869593466105033,0,0,0.539703191637817,0,0,2.10666630197628,0,0,0,8.30976176682415,0,0,0,0,0.253359865475099,0,1.59857431606684,2.07150306917737,13.5082346548991,3.29622120855658,2.74018930480927,2.7673859670727,2.41156224884196,3.99801604261396,8.29399502775858,4.94389935468748,1.01219549843938,0,5.66183974815932,2.20841518460394,1.45462575940567,0,5.27005434620785,3.56059401582874,2.55457055208591,0,0,0,5.84183493678809,16.9275223042892,24.7539073662343,10.6032835317289,12.5300574091862,7.48036960414416,10.058958310201,3.36069900706044,1.8661045591514,1.76905930903572,2.10441855886474,4.81445638962004,3.44853156650209,3.78130472591233,6.63101198477146,12.042460349785,8.58361925908494,14.2426621330788,4.39795730256327,3.44908788692548,7.37513712654495,7.03804496655795,5.04150184583422,6.39508673218875,7.3132954969655,4.93877127379064,1.59227413454795,0,0,0,0.828503090142008,0.469052119962192,0.180062061461015,0.710234206755631,1.18058539048442,0.462801338662135,0,1.3413670069981,0.700592054203017,0.822799249567402,0.656669856316381,0.486412857275134,0.438599962275997,0.219550115291051,0.268412837520744,9.2527577368216,6.99751364179134,0,0.264450566663544,3.83918850963421,6.27039014023184,6.44337306610467,4.23535401709019,5.11469500843202,4.94586627892654,1.42358718463353,2.63518327558417,2.5133520880027,2.58643413653496,3.11942539390592,2.69645822596266,1.29682829924817,1.59313018603494,1.13800740571849,1.5994791765362,3.38123207019241,1.62921062276251,1.16371492300575,1.47285221769669,1.51767689098217,1.32849133181642,0.470996183524124,0.740382983530803,0.296452627087149,1.16791574001266,0.786235980452812,0,0.202860121388503,0.241177159752417,0.25462585178142,0.287696137450811,0.324270453550071,0,0,0.372140947668503,0,0.757736633841335,0.179397413521912,0,3.14080423283228,3.03186258832776,1.62964976442026,1.18821560042632,1.64283173801951,1.50755631697634,3.09456733151818,7.61021226645415,1.57635144106191,0.44292937929755,0.956728611944923,2.78567635016755,1.38147985492716,4.77341893318988,0,0,3.44234991113325,9.93372286697037,3.69266356971921,4.68846746368813,0.983609672260053,1.76729649043061,17.6684602873104,9.76096860741596,17.0184484208911,6.69112634267146,12.6995244226965,20.3815102167959,5.26253912177363,14.028281179743,12.2539211163422,10.9249247583414,2.83880170416537,1.78065603667255,3.74640006513225,7.25868541079156,0,1.69946445308487,1.81394134178851,0.754420319023592,2.36241514304618,2.76691633149535,2.32585463851399,2.54473610634254,2.49548164869305,3.16036757935816,2.10837217149998,1.03135543248187,6.12791290356818,6.12207719706455,8.27895576209629,12.8602221018955,8.33499098118686,8.74007206250146,9.05019613311665,5.48036908406279,3.52007562095566,5.71946591332314,1.54369878638473,6.26567761177624,3.71368181400583,4.76472106932431,3.9392873521035,2.79039529566604,2.91480836629851,4.45020724825223,2.9048049735635,7.22354037871279,8.33375373163703,2.82552685507037,2.7338845544205,2.74533807847827,0.169978429993855,0,0,0.954670618015114,2.68885594543965,7.1161813494397,5.40026704109006,4.59994251231831,5.45906409365444,3.37160865962052,6.4469695465762,2.87931536182433,1.16653475962614,0,0,0.897099276263873,0.330916980914195,0.777804753376191,1.16243841129958,0.506868376472335,1.05621514781179,3.51551839078665,1.36317147753424,1.44950472495604,0.864090018773596,2.8441000856536,4.25722952109345,3.59488350076895,3.76770386635606,2.68540043501222,2.58285761215644,1.56254084375959,0.738447635872886,1.21159739937777,0.838274873204998,1.10908803650525,1.8516997340553,1.34696578296461,1.98690733708667,2.49403421976732,1.10992976687032,0.62799699626633,0.671538465456314,7.53439416725543,3.19060208267009,2.56412273974171,4.28736758158132,5.01572104035363,5.64751842617067,7.82552902062201,4.58316410751517,5.67115501734169,5.48066015816514,6.7985450765073,4.05013500139084,3.60256962579376,2.71885445390523,3.10656187051092,2.17953429926771,7.98049746802062,6.65861062441123,5.59145449257076,4.19226325255965,4.22840069435032,3.77819437262746,4.53277125925567,2.56735367673452,4.54854981174835,5.83002389747551,5.28153755881013,6.64854703036165,6.78666615491614,6.31790158511746,9.52587382566147,5.91010062318763,5.40145817298374,6.1812885120496,5.2991611248383,4.11443102862498,3.54951612318675,4.29185141905178,7.70336008151341,5.27012530325851,4.23073039458383,6.40247905054704,5.5244639401947,6.24698923690964,3.36685362994643,7.3553711236988,5.81176446015824,4.91077251803627,5.57772628269478,4.82266527452853,9.49280196164194,4.21076895201735,5.15690529715916,5.54736162999646,3.08827986767322,2.78241402744506 | ||
|short_description=p1@Klhl29 | |short_description=p1@Klhl29 | ||
}} | }} |
Latest revision as of 16:02, 26 September 2015
Short description: | p1@Klhl29 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Klhl29_5end |
Coexpression cluster: | MCL_coexpression_mm9:1325 |
Association with transcript: | -6bp_to_ENSMUST00000020958, ENSMUST00000170609, NM_001164493, uc007myw.2_5end |
EntrezGene: | Klhl29 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 9.68e-18 | 44 |
neurectodermal cell | 9.68e-18 | 44 |
neural cell | 3.10e-17 | 43 |
neuron | 1.64e-16 | 33 |
neuronal stem cell | 1.64e-16 | 33 |
neuroblast | 1.64e-16 | 33 |
electrically signaling cell | 1.64e-16 | 33 |
electrically responsive cell | 1.57e-15 | 39 |
electrically active cell | 1.57e-15 | 39 |
CNS neuron (sensu Vertebrata) | 1.53e-11 | 23 |
neuroblast (sensu Vertebrata) | 1.53e-11 | 23 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 9.49e-31 | 95 |
ectoderm | 9.49e-31 | 95 |
presumptive ectoderm | 9.49e-31 | 95 |
central nervous system | 7.95e-28 | 73 |
nervous system | 9.29e-28 | 75 |
ecto-epithelium | 3.32e-24 | 73 |
neurectoderm | 8.80e-23 | 64 |
neural plate | 8.80e-23 | 64 |
presumptive neural plate | 8.80e-23 | 64 |
regional part of nervous system | 9.02e-20 | 54 |
pre-chordal neural plate | 5.80e-19 | 49 |
neural tube | 8.88e-19 | 52 |
neural rod | 8.88e-19 | 52 |
future spinal cord | 8.88e-19 | 52 |
neural keel | 8.88e-19 | 52 |
brain | 5.11e-18 | 47 |
future brain | 5.11e-18 | 47 |
regional part of brain | 2.05e-17 | 46 |
anterior neural tube | 2.75e-17 | 40 |
regional part of forebrain | 4.99e-17 | 39 |
forebrain | 4.99e-17 | 39 |
future forebrain | 4.99e-17 | 39 |
gray matter | 9.86e-14 | 34 |
structure with developmental contribution from neural crest | 1.60e-13 | 92 |
brain grey matter | 1.35e-12 | 29 |
regional part of telencephalon | 1.35e-12 | 29 |
telencephalon | 1.35e-12 | 29 |
cerebral cortex | 2.44e-08 | 21 |
cerebral hemisphere | 2.44e-08 | 21 |
pallium | 2.44e-08 | 21 |