FFCP PHASE1:Mm9::chr11:17059277..17059360,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=19058 | |EntrezGene=19058 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=2 | |||
|TSSclassifier=NA | |||
|UniProt=Q63810 | |UniProt=Q63810 | ||
|association_with_transcript=0bp_to_NM_024459,uc007ica.1_5end | |association_with_transcript=0bp_to_NM_024459,uc007ica.1_5end | ||
|cluster_id=chr11:17059277..17059360,+ | |||
|description=CAGE_peak_1_at_Ppp3r1_5end | |description=CAGE_peak_1_at_Ppp3r1_5end | ||
|id=chr11:17059277..17059360,+ | |id=chr11:17059277..17059360,+ | ||
|ontology_enrichment_celltype=CL:0000393!1.41e-14!39;CL:0000211!1.41e-14!39;CL:0000540!4.47e-13!33;CL:0000047!4.47e-13!33;CL:0000031!4.47e-13!33;CL:0000404!4.47e-13!33;CL:0000055!6.28e-12!50;CL:0000117!1.17e-11!23;CL:0000337!1.17e-11!23;CL:0002319!3.92e-11!43;CL:0000221!9.00e-11!44;CL:0000133!9.00e-11!44;CL:0002321!1.78e-07!70;CL:0000220!1.78e-07!70 | |ontology_enrichment_celltype=CL:0000393!1.41e-14!39;CL:0000211!1.41e-14!39;CL:0000540!4.47e-13!33;CL:0000047!4.47e-13!33;CL:0000031!4.47e-13!33;CL:0000404!4.47e-13!33;CL:0000055!6.28e-12!50;CL:0000117!1.17e-11!23;CL:0000337!1.17e-11!23;CL:0002319!3.92e-11!43;CL:0000221!9.00e-11!44;CL:0000133!9.00e-11!44;CL:0002321!1.78e-07!70;CL:0000220!1.78e-07!70 | ||
|ontology_enrichment_celltype_v019_2=CL:0000393,1.41e-14,39;CL:0000211,1.41e-14,39;CL:0000540,4.47e-13,33;CL:0000047,4.47e-13,33;CL:0000031,4.47e-13,33;CL:0000404,4.47e-13,33;CL:0000117,1.17e-11,23;CL:0000337,1.17e-11,23;CL:0002319,3.92e-11,43;CL:0000221,9.00e-11,44;CL:0000133,9.00e-11,44;CL:0002321,1.78e-07,70 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!2.97e-22!75;UBERON:0001016!2.97e-22!75;UBERON:0001017!4.17e-22!73;UBERON:0005743!4.17e-22!73;UBERON:0004121!5.01e-19!102;UBERON:0000924!5.01e-19!102;UBERON:0006601!5.01e-19!102;UBERON:0002020!1.30e-18!34;UBERON:0001049!1.01e-17!52;UBERON:0005068!1.01e-17!52;UBERON:0006241!1.01e-17!52;UBERON:0007135!1.01e-17!52;UBERON:0000955!1.03e-16!50;UBERON:0006238!1.03e-16!50;UBERON:0002616!3.66e-16!49;UBERON:0002791!9.11e-16!29;UBERON:0003528!9.11e-16!29;UBERON:0001893!9.11e-16!29;UBERON:0002346!5.00e-15!71;UBERON:0003075!5.00e-15!71;UBERON:0007284!5.00e-15!71;UBERON:0000033!3.32e-13!63;UBERON:0003080!5.65e-13!40;UBERON:0002780!2.11e-12!39;UBERON:0001890!2.11e-12!39;UBERON:0006240!2.11e-12!39;UBERON:0000956!1.64e-11!21;UBERON:0001869!1.64e-11!21;UBERON:0000203!1.64e-11!21;UBERON:0007811!7.19e-11!86;UBERON:0003056!1.21e-10!49;UBERON:0002619!2.68e-10!17;UBERON:0000153!2.44e-08!94;UBERON:0002021!3.95e-08!10;UBERON:0000411!3.95e-08!10;UBERON:0001950!3.95e-08!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.97e-22,75;UBERON:0001017,4.17e-22,73;UBERON:0004121,8.01e-20,95;UBERON:0000924,8.01e-20,95;UBERON:0006601,8.01e-20,95;UBERON:0000073,5.36e-19,54;UBERON:0002020,1.30e-18,34;UBERON:0001049,1.01e-17,52;UBERON:0005068,1.01e-17,52;UBERON:0006241,1.01e-17,52;UBERON:0007135,1.01e-17,52;UBERON:0002346,3.98e-16,64;UBERON:0003075,3.98e-16,64;UBERON:0007284,3.98e-16,64;UBERON:0003528,9.11e-16,29;UBERON:0002791,9.11e-16,29;UBERON:0001893,9.11e-16,29;UBERON:0010371,3.93e-15,73;UBERON:0000955,6.79e-15,47;UBERON:0006238,6.79e-15,47;UBERON:0002616,2.32e-14,46;UBERON:0003080,5.65e-13,40;UBERON:0002780,2.11e-12,39;UBERON:0001890,2.11e-12,39;UBERON:0006240,2.11e-12,39;UBERON:0010314,7.25e-12,92;UBERON:0000956,1.64e-11,21;UBERON:0001869,1.64e-11,21;UBERON:0000203,1.64e-11,21;UBERON:0003056,1.21e-10,49;UBERON:0002619,2.68e-10,17;UBERON:0002021,3.95e-08,10;UBERON:0000411,3.95e-08,10;UBERON:0001950,3.95e-08,10 | |||
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| ||
|short_description=p1@Ppp3r1 | |short_description=p1@Ppp3r1 | ||
}} | }} |
Latest revision as of 04:22, 27 September 2015
Short description: | p1@Ppp3r1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Ppp3r1_5end |
Coexpression cluster: | MCL_coexpression_mm9:2 |
Association with transcript: | 0bp_to_NM_024459, uc007ica.1_5end |
EntrezGene: | Ppp3r1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
electrically responsive cell | 1.41e-14 | 39 |
electrically active cell | 1.41e-14 | 39 |
neuron | 4.47e-13 | 33 |
neuronal stem cell | 4.47e-13 | 33 |
neuroblast | 4.47e-13 | 33 |
electrically signaling cell | 4.47e-13 | 33 |
CNS neuron (sensu Vertebrata) | 1.17e-11 | 23 |
neuroblast (sensu Vertebrata) | 1.17e-11 | 23 |
neural cell | 3.92e-11 | 43 |
ectodermal cell | 9.00e-11 | 44 |
neurectodermal cell | 9.00e-11 | 44 |
embryonic cell | 1.78e-07 | 70 |
Ontology term | p-value | n |
---|---|---|
nervous system | 2.97e-22 | 75 |
central nervous system | 4.17e-22 | 73 |
ectoderm-derived structure | 8.01e-20 | 95 |
ectoderm | 8.01e-20 | 95 |
presumptive ectoderm | 8.01e-20 | 95 |
regional part of nervous system | 5.36e-19 | 54 |
gray matter | 1.30e-18 | 34 |
neural tube | 1.01e-17 | 52 |
neural rod | 1.01e-17 | 52 |
future spinal cord | 1.01e-17 | 52 |
neural keel | 1.01e-17 | 52 |
neurectoderm | 3.98e-16 | 64 |
neural plate | 3.98e-16 | 64 |
presumptive neural plate | 3.98e-16 | 64 |
brain grey matter | 9.11e-16 | 29 |
regional part of telencephalon | 9.11e-16 | 29 |
telencephalon | 9.11e-16 | 29 |
ecto-epithelium | 3.93e-15 | 73 |
brain | 6.79e-15 | 47 |
future brain | 6.79e-15 | 47 |
regional part of brain | 2.32e-14 | 46 |
anterior neural tube | 5.65e-13 | 40 |
regional part of forebrain | 2.11e-12 | 39 |
forebrain | 2.11e-12 | 39 |
future forebrain | 2.11e-12 | 39 |
structure with developmental contribution from neural crest | 7.25e-12 | 92 |
cerebral cortex | 1.64e-11 | 21 |
cerebral hemisphere | 1.64e-11 | 21 |
pallium | 1.64e-11 | 21 |
pre-chordal neural plate | 1.21e-10 | 49 |
regional part of cerebral cortex | 2.68e-10 | 17 |
occipital lobe | 3.95e-08 | 10 |
visual cortex | 3.95e-08 | 10 |
neocortex | 3.95e-08 | 10 |