FFCP PHASE1:Mm9::chr13:59658591..59658707,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=67269 | |EntrezGene=67269 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=60 | |||
|TSSclassifier=NA | |||
|UniProt=Q641K1,E9PX07,E9PXA7,E9Q352,E9Q3T5,Q8C1R2,E9PYF9 | |UniProt=Q641K1,E9PX07,E9PXA7,E9Q352,E9Q3T5,Q8C1R2,E9PYF9 | ||
|association_with_transcript=0bp_to_ENSMUST00000022040,ENSMUST00000091573,ENSMUST00000109830,ENSMUST00000165370,ENSMUST00000165477,ENSMUST00000165598,ENSMUST00000166369,ENSMUST00000166585,ENSMUST00000167096,ENSMUST00000167593,ENSMUST00000170555,ENSMUST00000171606,NM_001048008,NM_023328,uc007qun.1,uc007qup.1,uc007quq.1,uc007qur.1,uc007qus.1,uc011zar.1_5end | |association_with_transcript=0bp_to_ENSMUST00000022040,ENSMUST00000091573,ENSMUST00000109830,ENSMUST00000165370,ENSMUST00000165477,ENSMUST00000165598,ENSMUST00000166369,ENSMUST00000166585,ENSMUST00000167096,ENSMUST00000167593,ENSMUST00000170555,ENSMUST00000171606,NM_001048008,NM_023328,uc007qun.1,uc007qup.1,uc007quq.1,uc007qur.1,uc007qus.1,uc011zar.1_5end | ||
|cluster_id=chr13:59658591..59658707,- | |||
|description=CAGE_peak_1_at_Agtpbp1_5end | |description=CAGE_peak_1_at_Agtpbp1_5end | ||
|id=chr13:59658591..59658707,- | |id=chr13:59658591..59658707,- | ||
|ontology_enrichment_celltype=CL:0000540!2.72e-11!33;CL:0000047!2.72e-11!33;CL:0000031!2.72e-11!33;CL:0000404!2.72e-11!33;CL:0000117!3.66e-10!23;CL:0000337!3.66e-10!23;CL:0000393!2.33e-09!39;CL:0000211!2.33e-09!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,2.72e-11,33;CL:0000047,2.72e-11,33;CL:0000031,2.72e-11,33;CL:0000404,2.72e-11,33;CL:0000117,3.66e-10,23;CL:0000337,3.66e-10,23;CL:0000393,2.33e-09,39;CL:0000211,2.33e-09,39 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.62e-16!73;UBERON:0005743!2.62e-16!73;UBERON:0000073!3.77e-16!75;UBERON:0001016!3.77e-16!75;UBERON:0001049!1.31e-14!52;UBERON:0005068!1.31e-14!52;UBERON:0006241!1.31e-14!52;UBERON:0007135!1.31e-14!52;UBERON:0002020!4.53e-14!34;UBERON:0000955!6.66e-14!50;UBERON:0006238!6.66e-14!50;UBERON:0000033!1.09e-13!63;UBERON:0002616!2.22e-13!49;UBERON:0002346!1.02e-12!71;UBERON:0003075!1.02e-12!71;UBERON:0007284!1.02e-12!71;UBERON:0004121!1.42e-12!102;UBERON:0000924!1.42e-12!102;UBERON:0006601!1.42e-12!102;UBERON:0002791!1.04e-11!29;UBERON:0003528!1.04e-11!29;UBERON:0001893!1.04e-11!29;UBERON:0003056!2.70e-11!49;UBERON:0003080!3.56e-11!40;UBERON:0002780!1.03e-10!39;UBERON:0001890!1.03e-10!39;UBERON:0006240!1.03e-10!39;UBERON:0007811!7.20e-10!86;UBERON:0000956!5.11e-08!21;UBERON:0001869!5.11e-08!21;UBERON:0000203!5.11e-08!21;UBERON:0000153!7.37e-08!94;UBERON:0002021!8.35e-08!10;UBERON:0000411!8.35e-08!10;UBERON:0001950!8.35e-08!10;UBERON:0002619!9.11e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.62e-16,73;UBERON:0001016,3.77e-16,75;UBERON:0000073,9.45e-16,54;UBERON:0002346,1.17e-15,64;UBERON:0003075,1.17e-15,64;UBERON:0007284,1.17e-15,64;UBERON:0004121,8.89e-15,95;UBERON:0000924,8.89e-15,95;UBERON:0006601,8.89e-15,95;UBERON:0001049,1.31e-14,52;UBERON:0005068,1.31e-14,52;UBERON:0006241,1.31e-14,52;UBERON:0007135,1.31e-14,52;UBERON:0002020,4.53e-14,34;UBERON:0010371,1.85e-13,73;UBERON:0000955,2.88e-12,47;UBERON:0006238,2.88e-12,47;UBERON:0002616,9.23e-12,46;UBERON:0003528,1.04e-11,29;UBERON:0002791,1.04e-11,29;UBERON:0001893,1.04e-11,29;UBERON:0010314,1.26e-11,92;UBERON:0003056,2.70e-11,49;UBERON:0003080,3.56e-11,40;UBERON:0002780,1.03e-10,39;UBERON:0001890,1.03e-10,39;UBERON:0006240,1.03e-10,39;UBERON:0000956,5.11e-08,21;UBERON:0001869,5.11e-08,21;UBERON:0000203,5.11e-08,21;UBERON:0002021,8.35e-08,10;UBERON:0000411,8.35e-08,10;UBERON:0001950,8.35e-08,10;UBERON:0002619,9.11e-07,17 | |||
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| |phase1_expression=11.69086583865,1.39590163055744,2.72999543633722,1.20985684522732,0.500895729946347,2.01455126294268,1.63528848416868,12.2667157269497,6.335492496825,9.36258105287974,12.3276937122364,11.1681022593471,17.1200729931206,15.6482520330005,12.9912807108108,13.3633676477285,12.5921138063066,13.5648731104042,18.2362196695633,14.004858509335,63.5273377428491,6.65249373045932,5.74639536105658,3.67982572424835,2.75291137280604,2.29692785646008,1.7230479846363,1.939241094173,0.760093677825496,1.26015064879965,1.55211357458713,8.89042942843484,12.916360539276,0,0.577703239502549,0.498703936075477,0.816677425049476,22.1821764290561,19.533383613095,29.3173296625327,27.0586484494267,28.6879103682547,17.9638830621527,10.9530231638752,10.9487085717076,11.5634453861859,5.47673941043627,4.57852828398938,1.97717564461025,5.44403717407994,4.4795654920116,2.87505128729943,16.1071301815427,11.6057942721815,13.4437519656986,10.2903774414379,11.747871037489,12.8918023069361,33.5845325026932,29.6234948392338,19.6487735086916,4.06613438482959,7.11435836888911,2.2497492932035,3.9554654502679,4.2628806896766,2.99600110518405,5.76327457982332,20.5305432370786,18.3608076131099,21.453146057841,37.4202789568983,29.3755159465646,23.885705846916,16.3895755441184,23.8996884518605,53.9567816897005,70.8664726372792,67.8940876992596,34.4223210975806,34.5823292817108,30.7338888628488,45.7860118362265,46.1465340225978,48.5898427930256,40.3641162098925,49.1182298756905,49.9550514811806,10.7531194533121,17.0036010240267,16.232411367294,6.88339101585109,2.03991400112325,4.31762553310254,7.14754059192436,5.82434953226536,21.7688851204215,13.4639954836666,11.1707981979234,9.54016851177919,9.57735254481427,3.84979432242953,28.028576367731,21.3320010945999,4.32982082022428,3.54703811665138,2.52762222507392,15.7573754012303,21.2329064590681,11.1331604298619,7.63335437770998,8.52503339273995,7.14908041493781,9.04335843315735,9.05433044944927,10.9329934456818,6.42706916109372,19.665512541108,17.6922110389975,12.2942805960031,22.0841518460394,17.9403843660032,5.59175283654366,89.883704682545,94.4604647728682,6.64188343542338,5.63131085177825,2.99951365496704,6.98886248901856,45.5363543790661,62.6775825861518,42.2198623099224,82.0450791307545,93.3361419255706,55.0638318082834,71.0616732236778,9.3692214742291,14.1823946495506,8.84529654517861,24.411255282831,6.50602214813519,11.0353010128067,11.7040384373477,16.8789395976001,14.7639203158381,19.9857403644366,20.052169055782,36.2184719034622,4.31135985865684,7.56424320671277,7.38994721488585,7.45265490253754,7.78532297831674,6.61679116392116,11.3180175024369,7.56330213910274,13.3420505589515,6.94839349209731,7.10408748488982,9.94203708170409,7.03578179943289,8.28285482720668,9.94327889457883,9.44468312387538,7.71335564436891,9.99895962426754,9.92611585178591,13.5447797145917,17.9370236405694,19.2075932972541,37.0484459624561,48.0997958629343,45.2273237499564,52.0720904790242,77.3867010715988,38.8979434793695,3.30418782983798,2.64450566663544,9.59797127408553,13.7019636397659,8.76298736990235,7.86565746031036,4.44756087689741,5.70676878337677,8.0669940462567,3.78807595865225,10.8074139784116,5.57078121715222,8.38345574612217,5.39291645192533,5.83572734661674,7.96565093017469,4.55202962287396,7.19765629441292,5.63538678365402,8.14605311381257,6.7883370508669,10.9411879028897,12.5840708877272,17.1227771656338,15.2288766006134,17.0288086212085,7.41131567717872,11.3454671886944,9.82794975566015,11.4679677316275,9.12870546248263,12.0588579876208,5.85639459097266,9.20627639842594,6.16113861745134,6.58947391651396,10.0637744569148,9.30352369171258,2.18426371180192,6.31447194867779,7.71408878144222,6.75420929908714,16.812540305161,7.95863929436036,9.77789858652155,8.82674446030978,12.9079636558676,15.7455881995307,15.7108802984769,16.0009591243395,19.5467578691677,13.5093460685753,18.337298395611,19.1720078217413,21.5856227332369,16.0560455025478,12.0633027151418,12.5098307278303,13.769399644533,7.72622889653251,51.0550876161178,56.6132446240341,6.88526770582037,27.2668601380723,18.6149849455591,20.6932534477218,22.8348801596767,12.1874086955802,15.81870585985,19.2492040936406,22.2645885921192,21.9191893433484,26.0889933444706,52.0540532603327,13.4843080947855,6.23229612835393,9.12166972380026,17.4868330350888,43.8058956521877,4.85561272309963,9.67435382287203,19.0491130553457,22.4429438589387,26.7468578711217,15.247269296925,16.7225515559653,19.9638531895444,41.0847785316561,45.3300016872495,46.4109944616841,39.4909942674394,7.38250485528372,3.88076051348264,9.21649250635847,15.7832807941623,14.8046118609719,20.7331765958672,10.3518082698964,11.0295702789944,7.62595455109753,11.688005096913,13.6855589941428,10.4951877352339,13.0275917844817,11.1016279922917,10.5050175836839,7.57850175237612,57.852694227279,15.5492501526046,11.9704383418669,12.5932278611404,10.1718966782533,13.6694227721025,16.4720284708696,7.30907248973578,7.27747552083022,8.56839837587428,10.5013767981662,7.75023184273782,13.8257237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| ||
|short_description=p1@Agtpbp1 | |short_description=p1@Agtpbp1 | ||
}} | }} |
Latest revision as of 20:07, 1 October 2015
Short description: | p1@Agtpbp1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Agtpbp1_5end |
Coexpression cluster: | MCL_coexpression_mm9:60 |
Association with transcript: | 0bp_to_ENSMUST00000022040, ENSMUST00000091573, ENSMUST00000109830, ENSMUST00000165370, ENSMUST00000165477, ENSMUST00000165598, ENSMUST00000166369, ENSMUST00000166585, ENSMUST00000167096, ENSMUST00000167593, ENSMUST00000170555, ENSMUST00000171606, NM_001048008, NM_023328, uc007qun.1, uc007qup.1, uc007quq.1, uc007qur.1, uc007qus.1, uc011zar.1_5end |
EntrezGene: | Agtpbp1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 2.72e-11 | 33 |
neuronal stem cell | 2.72e-11 | 33 |
neuroblast | 2.72e-11 | 33 |
electrically signaling cell | 2.72e-11 | 33 |
CNS neuron (sensu Vertebrata) | 3.66e-10 | 23 |
neuroblast (sensu Vertebrata) | 3.66e-10 | 23 |
electrically responsive cell | 2.33e-09 | 39 |
electrically active cell | 2.33e-09 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 2.62e-16 | 73 |
nervous system | 3.77e-16 | 75 |
regional part of nervous system | 9.45e-16 | 54 |
neurectoderm | 1.17e-15 | 64 |
neural plate | 1.17e-15 | 64 |
presumptive neural plate | 1.17e-15 | 64 |
ectoderm-derived structure | 8.89e-15 | 95 |
ectoderm | 8.89e-15 | 95 |
presumptive ectoderm | 8.89e-15 | 95 |
neural tube | 1.31e-14 | 52 |
neural rod | 1.31e-14 | 52 |
future spinal cord | 1.31e-14 | 52 |
neural keel | 1.31e-14 | 52 |
gray matter | 4.53e-14 | 34 |
ecto-epithelium | 1.85e-13 | 73 |
brain | 2.88e-12 | 47 |
future brain | 2.88e-12 | 47 |
regional part of brain | 9.23e-12 | 46 |
brain grey matter | 1.04e-11 | 29 |
regional part of telencephalon | 1.04e-11 | 29 |
telencephalon | 1.04e-11 | 29 |
structure with developmental contribution from neural crest | 1.26e-11 | 92 |
pre-chordal neural plate | 2.70e-11 | 49 |
anterior neural tube | 3.56e-11 | 40 |
regional part of forebrain | 1.03e-10 | 39 |
forebrain | 1.03e-10 | 39 |
future forebrain | 1.03e-10 | 39 |
cerebral cortex | 5.11e-08 | 21 |
cerebral hemisphere | 5.11e-08 | 21 |
pallium | 5.11e-08 | 21 |
occipital lobe | 8.35e-08 | 10 |
visual cortex | 8.35e-08 | 10 |
neocortex | 8.35e-08 | 10 |
regional part of cerebral cortex | 9.11e-07 | 17 |