FFCP PHASE1:Mm9::chr11:93905555..93905587,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=70834 | |EntrezGene=70834 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=Q58A65 | |UniProt=Q58A65 | ||
|association_with_transcript=0bp_to_ENSMUST00000103168_5end | |association_with_transcript=0bp_to_ENSMUST00000103168_5end | ||
|cluster_id=chr11:93905555..93905587,+ | |||
|description=CAGE_peak_3_at_Spag9_5end | |description=CAGE_peak_3_at_Spag9_5end | ||
|id=chr11:93905555..93905587,+ | |id=chr11:93905555..93905587,+ | ||
|ontology_enrichment_celltype=CL:0000540!4.19e-16!33;CL:0000047!4.19e-16!33;CL:0000031!4.19e-16!33;CL:0000404!4.19e-16!33;CL:0000117!3.11e-13!23;CL:0000337!3.11e-13!23;CL:0000221!1.39e-11!44;CL:0000133!1.39e-11!44;CL:0002319!3.37e-11!43;CL:0000393!1.91e-10!39;CL:0000211!1.91e-10!39;CL:0000055!6.55e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,8.90e-17,33;CL:0000047,8.90e-17,33;CL:0000031,8.90e-17,33;CL:0000404,8.90e-17,33;CL:0000117,8.98e-14,23;CL:0000337,8.98e-14,23;CL:0000221,1.25e-11,44;CL:0000133,1.25e-11,44;CL:0000393,2.84e-11,39;CL:0000211,2.84e-11,39;CL:0002319,3.14e-11,43 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!3.33e-28!102;UBERON:0000924!3.33e-28!102;UBERON:0006601!3.33e-28!102;UBERON:0001017!1.68e-27!73;UBERON:0005743!1.68e-27!73;UBERON:0000073!7.92e-27!75;UBERON:0001016!7.92e-27!75;UBERON:0002346!9.18e-26!71;UBERON:0003075!9.18e-26!71;UBERON:0007284!9.18e-26!71;UBERON:0000033!6.19e-23!63;UBERON:0001049!5.57e-21!52;UBERON:0005068!5.57e-21!52;UBERON:0006241!5.57e-21!52;UBERON:0007135!5.57e-21!52;UBERON:0000955!4.18e-20!50;UBERON:0006238!4.18e-20!50;UBERON:0003056!1.11e-19!49;UBERON:0002616!1.65e-19!49;UBERON:0002020!2.41e-17!34;UBERON:0003080!3.02e-16!40;UBERON:0002780!1.10e-15!39;UBERON:0001890!1.10e-15!39;UBERON:0006240!1.10e-15!39;UBERON:0002791!1.34e-14!29;UBERON:0003528!1.34e-14!29;UBERON:0001893!1.34e-14!29;UBERON:0000956!1.15e-10!21;UBERON:0001869!1.15e-10!21;UBERON:0000203!1.15e-10!21;UBERON:0000153!1.75e-10!94;UBERON:0007811!2.84e-10!86;UBERON:0000468!8.91e-10!333;UBERON:0002619!1.50e-08!17;UBERON:0002021!5.08e-08!10;UBERON:0000411!5.08e-08!10;UBERON:0001950!5.08e-08!10;UBERON:0000922!8.42e-07!328 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.68e-28,73;UBERON:0004121,1.27e-27,95;UBERON:0000924,1.27e-27,95;UBERON:0006601,1.27e-27,95;UBERON:0001016,1.82e-27,75;UBERON:0002346,5.61e-27,64;UBERON:0003075,5.61e-27,64;UBERON:0007284,5.61e-27,64;UBERON:0010314,3.51e-25,92;UBERON:0010371,2.13e-24,73;UBERON:0000073,3.13e-23,54;UBERON:0001049,9.75e-22,52;UBERON:0005068,9.75e-22,52;UBERON:0006241,9.75e-22,52;UBERON:0007135,9.75e-22,52;UBERON:0003056,3.11e-20,49;UBERON:0000955,1.20e-18,47;UBERON:0006238,1.20e-18,47;UBERON:0002616,4.87e-18,46;UBERON:0002020,9.22e-18,34;UBERON:0003080,1.21e-16,40;UBERON:0002780,4.63e-16,39;UBERON:0001890,4.63e-16,39;UBERON:0006240,4.63e-16,39;UBERON:0003528,6.76e-15,29;UBERON:0002791,6.76e-15,29;UBERON:0001893,6.76e-15,29;UBERON:0000956,8.63e-11,21;UBERON:0001869,8.63e-11,21;UBERON:0000203,8.63e-11,21;UBERON:0002619,1.39e-08,17;UBERON:0002021,2.55e-08,10;UBERON:0000411,2.55e-08,10;UBERON:0001950,2.55e-08,10 | |||
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| ||
|short_description=p3@Spag9 | |short_description=p3@Spag9 | ||
}} | }} |
Latest revision as of 23:33, 25 September 2015
Short description: | p3@Spag9 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Spag9_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000103168_5end |
EntrezGene: | Spag9 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 8.90e-17 | 33 |
neuronal stem cell | 8.90e-17 | 33 |
neuroblast | 8.90e-17 | 33 |
electrically signaling cell | 8.90e-17 | 33 |
CNS neuron (sensu Vertebrata) | 8.98e-14 | 23 |
neuroblast (sensu Vertebrata) | 8.98e-14 | 23 |
ectodermal cell | 1.25e-11 | 44 |
neurectodermal cell | 1.25e-11 | 44 |
electrically responsive cell | 2.84e-11 | 39 |
electrically active cell | 2.84e-11 | 39 |
neural cell | 3.14e-11 | 43 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 3.68e-28 | 73 |
ectoderm-derived structure | 1.27e-27 | 95 |
ectoderm | 1.27e-27 | 95 |
presumptive ectoderm | 1.27e-27 | 95 |
nervous system | 1.82e-27 | 75 |
neurectoderm | 5.61e-27 | 64 |
neural plate | 5.61e-27 | 64 |
presumptive neural plate | 5.61e-27 | 64 |
structure with developmental contribution from neural crest | 3.51e-25 | 92 |
ecto-epithelium | 2.13e-24 | 73 |
regional part of nervous system | 3.13e-23 | 54 |
neural tube | 9.75e-22 | 52 |
neural rod | 9.75e-22 | 52 |
future spinal cord | 9.75e-22 | 52 |
neural keel | 9.75e-22 | 52 |
pre-chordal neural plate | 3.11e-20 | 49 |
brain | 1.20e-18 | 47 |
future brain | 1.20e-18 | 47 |
regional part of brain | 4.87e-18 | 46 |
gray matter | 9.22e-18 | 34 |
anterior neural tube | 1.21e-16 | 40 |
regional part of forebrain | 4.63e-16 | 39 |
forebrain | 4.63e-16 | 39 |
future forebrain | 4.63e-16 | 39 |
brain grey matter | 6.76e-15 | 29 |
regional part of telencephalon | 6.76e-15 | 29 |
telencephalon | 6.76e-15 | 29 |
cerebral cortex | 8.63e-11 | 21 |
cerebral hemisphere | 8.63e-11 | 21 |
pallium | 8.63e-11 | 21 |
regional part of cerebral cortex | 1.39e-08 | 17 |
occipital lobe | 2.55e-08 | 10 |
visual cortex | 2.55e-08 | 10 |
neocortex | 2.55e-08 | 10 |